Wall clock time and date at job start Tue Mar 31 2020 16:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45208 * 109.46965 * 2 1 4 4 C 1.34223 * 117.00096 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99830 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99894 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.46796 * 179.97438 * 6 4 3 8 8 C 1.46902 * 111.00283 * 66.04964 * 7 6 4 9 9 C 1.50698 * 109.47003 * 193.95441 * 8 7 6 10 10 H 1.07998 * 120.00342 * 359.97438 * 9 8 7 11 11 C 1.37890 * 119.99674 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99943 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99595 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46864 * 90.00370 * 13 11 9 15 15 H 1.48505 * 109.46720 * 210.00091 * 13 11 9 16 16 H 1.48504 * 109.47571 * 330.00184 * 13 11 9 17 17 C 1.46906 * 110.99888 * 189.99926 * 7 6 4 18 18 C 1.50701 * 109.46965 * 170.00033 * 17 7 6 19 19 C 1.33641 * 126.03913 * 89.69584 * 18 17 7 20 20 N 1.31781 * 114.50004 * 179.78796 * 19 18 17 21 21 C 1.29028 * 117.12538 * 0.51548 * 20 19 18 22 22 C 1.50694 * 124.91730 * 179.75506 * 21 20 19 23 23 C 1.53001 * 117.49904 * 8.57950 * 22 21 20 24 24 C 1.53000 * 60.00165 * 252.51198 * 23 22 21 25 25 S 1.70972 * 110.16520 * 359.71821 * 21 20 19 26 26 H 1.08999 * 109.47100 * 60.00255 * 1 2 3 27 27 H 1.09001 * 109.46737 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47490 * 300.00417 * 1 2 3 29 29 H 1.09002 * 109.47358 * 239.99945 * 2 1 3 30 30 H 1.08997 * 109.47360 * 119.99268 * 2 1 3 31 31 H 1.08999 * 109.47012 * 60.00351 * 6 4 3 32 32 H 1.08996 * 109.47316 * 299.99623 * 6 4 3 33 33 H 1.09006 * 109.46743 * 313.95168 * 8 7 6 34 34 H 1.08993 * 109.47191 * 73.95180 * 8 7 6 35 35 H 0.96998 * 119.99558 * 180.02562 * 12 11 9 36 36 H 1.08993 * 109.47164 * 289.99976 * 17 7 6 37 37 H 1.08996 * 109.46920 * 50.00010 * 17 7 6 38 38 H 1.08000 * 122.74646 * 359.97299 * 19 18 17 39 39 H 1.08997 * 115.55195 * 154.29105 * 22 21 20 40 40 H 1.09000 * 117.49898 * 0.02562 * 23 22 21 41 41 H 1.09006 * 117.50014 * 145.02383 * 23 22 21 42 42 H 1.08998 * 117.49738 * 252.50829 * 24 23 22 43 43 H 1.08997 * 117.51852 * 107.47821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9376 0.0000 7 7 5.3875 2.8607 0.0014 8 6 5.8853 2.2763 -1.2511 9 6 7.3346 1.8972 -1.0873 10 1 7.8359 2.0732 -0.1471 11 6 8.0206 1.3255 -2.1380 12 7 7.4103 1.1116 -3.2831 13 14 9.8173 0.8562 -1.9352 14 1 9.9111 -0.5403 -1.4390 15 1 10.5078 0.9634 -3.2456 16 1 10.4613 1.7725 -0.9599 17 6 5.9837 4.1822 0.2390 18 6 7.4639 4.0298 0.4778 19 6 8.4177 4.0531 -0.4579 20 7 9.6420 3.9019 0.0058 21 6 9.7731 3.7422 1.2794 22 6 11.0858 3.5493 1.9939 23 6 12.3676 3.7419 1.1810 24 6 11.9322 2.3367 1.6013 25 16 8.2420 3.7821 2.0391 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.5842 3.4702 0.8895 32 1 3.5851 3.4692 -0.8905 33 1 5.3025 1.3877 -1.4942 34 1 5.7891 3.0052 -2.0557 35 1 7.8928 0.7092 -4.0220 36 1 5.8196 4.8167 -0.6318 37 1 5.5196 4.6381 1.1135 38 1 8.2031 4.1879 -1.5078 39 1 11.1015 3.8568 3.0395 40 1 12.2614 4.0086 0.1295 41 1 13.2270 4.1765 1.6917 42 1 12.5052 1.8467 2.3885 43 1 11.5394 1.6783 0.8265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237793918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:17 Heat of formation + Delta-G solvation = 11.372277 kcal Electronic energy + Delta-G solvation = -25745.768027 eV Core-core repulsion = 22113.067781 eV Total energy + Delta-G solvation = -3632.700246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 9.48 seconds Orbital eigenvalues (eV) -40.05107 -39.32075 -37.29101 -36.42894 -35.55191 -32.54423 -31.70669 -30.62362 -28.00095 -27.23681 -25.27241 -23.39546 -22.99272 -22.17538 -21.82188 -21.16063 -20.05071 -18.16747 -17.55987 -17.19772 -16.68567 -16.19516 -15.84065 -15.51383 -14.85771 -14.51656 -14.29266 -14.09397 -13.67930 -13.45868 -13.31243 -13.30687 -12.78612 -12.39220 -12.17278 -12.03015 -11.75587 -11.75044 -11.57999 -11.44878 -11.32067 -11.05226 -10.65911 -10.59494 -10.45857 -10.37260 -10.28490 -10.20911 -9.82193 -9.60667 -9.24363 -8.78773 -8.41295 -8.32376 -7.55713 -7.46880 -5.96770 -3.88995 1.45121 2.07925 2.55098 2.77206 2.93123 3.41363 3.47945 3.60921 3.66749 4.20313 4.53017 4.67089 4.88135 4.98921 5.00545 5.08627 5.11999 5.15202 5.23013 5.36120 5.42901 5.47969 5.57694 5.65248 5.77011 5.78556 5.80892 5.82735 5.94480 5.95396 6.04199 6.08348 6.32107 6.43114 6.68877 6.79691 7.04980 7.15005 7.18413 7.79457 8.00377 8.10909 8.31848 8.51023 8.59904 9.08900 9.67558 11.13500 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.004167 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.646789 B = 6717.224740 C = 7734.049906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.453 3.547 5 O -0.465 6.465 6 C 0.067 3.933 7 N -0.524 5.524 8 C 0.186 3.814 9 C -0.489 4.489 10 H 0.074 0.926 11 C 0.059 3.941 12 N -0.898 5.898 13 Si 0.868 3.132 14 H -0.289 1.289 15 H -0.293 1.293 16 H -0.235 1.235 17 C 0.151 3.849 18 C -0.203 4.203 19 C 0.111 3.889 20 N -0.466 5.466 21 C 0.058 3.942 22 C -0.085 4.085 23 C -0.153 4.153 24 C -0.165 4.165 25 S 0.091 5.909 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.046 0.954 34 H -0.011 1.011 35 H 0.258 0.742 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.171 0.829 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 5.970 9.937 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.293 3.707 5 O -0.348 6.348 6 C -0.063 4.063 7 N -0.250 5.250 8 C 0.062 3.938 9 C -0.527 4.527 10 H 0.092 0.908 11 C -0.142 4.142 12 N -0.538 5.538 13 Si 0.696 3.304 14 H -0.216 1.216 15 H -0.219 1.219 16 H -0.158 1.158 17 C 0.021 3.979 18 C -0.324 4.324 19 C -0.039 4.039 20 N -0.181 5.181 21 C -0.219 4.219 22 C -0.107 4.107 23 C -0.192 4.192 24 C -0.204 4.204 25 S 0.346 5.654 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.007 0.993 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.188 0.812 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.971 5.188 10.840 12.656 hybrid contribution 0.412 -0.325 -1.778 1.854 sum -3.559 4.862 9.062 10.882 Atomic orbital electron populations 1.21781 0.93096 1.02590 1.03206 1.22905 0.94805 0.80912 1.02571 1.86456 1.25451 1.31851 1.85171 1.23666 0.80000 0.93252 0.73744 1.90755 1.59595 1.42536 1.41916 1.21447 0.91582 0.90151 1.03083 1.62018 1.00642 1.20766 1.41571 1.19991 0.96961 0.94542 0.82320 1.21456 0.94435 1.38273 0.98577 0.90835 1.24880 0.98345 0.95673 0.95307 1.69965 1.36617 1.44158 1.03048 0.86903 0.85916 0.79207 0.78384 1.21572 1.21886 1.15797 1.20081 0.88118 0.90049 0.99605 1.25058 0.99850 1.13808 0.93657 1.21304 0.84947 0.97121 1.00561 1.66165 1.25385 1.15215 1.11333 1.25640 0.97597 1.05889 0.92737 1.20347 0.86831 1.05455 0.98031 1.22935 0.95521 0.99199 1.01586 1.23102 1.02135 0.91425 1.03740 1.83358 1.00806 1.68932 1.12349 0.91639 0.90587 0.91721 0.91361 0.91517 0.87991 0.91587 0.93651 0.99295 0.93206 0.93370 0.91355 0.81161 0.86354 0.87518 0.88742 0.88489 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -5.87 10.22 -39.24 -0.40 -6.27 16 4 C 0.45 8.51 7.54 36.01 0.27 8.78 16 5 O -0.47 -10.81 14.20 -18.75 -0.27 -11.08 16 6 C 0.07 1.12 5.56 -4.98 -0.03 1.09 16 7 N -0.52 -10.78 4.30 -238.97 -1.03 -11.80 16 8 C 0.19 4.72 4.30 -4.98 -0.02 4.70 16 9 C -0.49 -13.27 5.58 -34.44 -0.19 -13.47 16 10 H 0.07 1.98 4.70 -52.49 -0.25 1.74 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.87 22.12 29.42 -169.99 -5.00 17.12 16 14 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.23 -5.65 4.77 56.52 0.27 -5.38 16 17 C 0.15 2.67 5.49 -4.97 -0.03 2.64 16 18 C -0.20 -3.92 4.15 -35.92 -0.15 -4.07 16 19 C 0.11 2.32 7.50 -19.18 -0.14 2.18 16 20 N -0.47 -9.59 8.83 -11.87 -0.10 -9.70 16 21 C 0.06 1.06 6.96 -13.46 -0.09 0.96 16 22 C -0.08 -1.26 6.29 -91.77 -0.58 -1.84 16 23 C -0.15 -2.11 10.12 -26.73 -0.27 -2.38 16 24 C -0.17 -2.42 10.23 -26.73 -0.27 -2.69 16 25 S 0.09 1.57 23.01 -107.50 -2.47 -0.90 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 30 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.10 1.35 7.93 -51.93 -0.41 0.94 16 32 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 33 H 0.05 1.30 5.80 -51.93 -0.30 1.00 16 34 H -0.01 -0.28 7.98 -51.93 -0.41 -0.70 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.05 0.82 8.01 -51.93 -0.42 0.40 16 37 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.17 3.81 7.68 -52.49 -0.40 3.41 16 39 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.11 1.69 7.84 -51.93 -0.41 1.28 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.10 1.81 6.97 -51.93 -0.36 1.45 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -33.43 364.31 -10.48 -43.91 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.44 Total: 1.95 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.99 Total: -2.46 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.40 Total: -47.76 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.67 Total: -17.35 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.00 Total: 17.12 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.43 -10.48 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237793918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.283 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.48 seconds