Wall clock time and date at job start Tue Mar 31 2020 13:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46726 * 2 1 4 4 C 1.52999 * 109.47052 * 240.00052 * 2 1 3 5 5 C 1.50708 * 109.46983 * 61.77070 * 4 2 1 6 6 H 1.07997 * 120.00033 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99829 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47399 * 89.99608 * 9 7 5 11 11 H 1.48499 * 109.47107 * 209.99927 * 9 7 5 12 12 H 1.48503 * 109.46999 * 329.99591 * 9 7 5 13 13 C 1.53002 * 109.47402 * 120.00046 * 2 1 3 14 14 N 1.46889 * 109.47269 * 181.58567 * 13 2 1 15 15 C 1.47908 * 111.00113 * 274.36324 * 14 13 2 16 16 C 1.53992 * 107.05781 * 145.84277 * 15 14 13 17 17 C 1.54595 * 105.14288 * 358.77495 * 16 15 14 18 18 H 1.09008 * 110.72278 * 96.57783 * 17 16 15 19 19 C 1.50698 * 110.72531 * 219.68500 * 17 16 15 20 20 N 1.29392 * 124.70829 * 58.56849 * 19 17 16 21 21 C 1.30909 * 117.46646 * 179.97438 * 20 19 17 22 22 C 1.36763 * 113.93504 * 0.24656 * 21 20 19 23 23 C 1.46493 * 126.17660 * 179.75239 * 22 21 20 24 24 O 1.21620 * 119.99829 * 180.02562 * 23 22 21 25 25 O 1.34879 * 120.00540 * 0.02562 * 23 22 21 26 26 S 1.70922 * 124.70301 * 238.52922 * 19 17 16 27 27 C 1.48539 * 111.00147 * 31.76048 * 14 13 2 28 28 H 1.09003 * 109.46952 * 174.18951 * 1 2 3 29 29 H 1.09005 * 109.47087 * 294.18385 * 1 2 3 30 30 H 1.08999 * 109.47255 * 54.18587 * 1 2 3 31 31 H 1.08998 * 109.46871 * 181.77123 * 4 2 1 32 32 H 1.09000 * 109.47137 * 301.77493 * 4 2 1 33 33 H 0.97001 * 120.00109 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46902 * 61.58417 * 13 2 1 35 35 H 1.09006 * 109.46857 * 301.58674 * 13 2 1 36 36 H 1.08991 * 109.91441 * 26.49115 * 15 14 13 37 37 H 1.09002 * 110.07749 * 265.28952 * 15 14 13 38 38 H 1.09001 * 110.30698 * 239.86086 * 16 15 14 39 39 H 1.09002 * 110.30970 * 117.69307 * 16 15 14 40 40 H 1.08004 * 123.03227 * 179.97438 * 21 20 19 41 41 H 0.96694 * 117.00336 * 180.02562 * 25 23 22 42 42 H 1.08989 * 110.66836 * 81.84359 * 27 14 13 43 43 H 1.09003 * 110.66384 * 318.71179 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5738 0.0141 -2.4793 6 1 0.9741 0.9068 -2.3800 7 6 1.9137 -0.4522 -3.7315 8 7 1.5073 0.1898 -4.8049 9 14 2.9515 -1.9958 -3.9034 10 1 2.0635 -3.1840 -3.9744 11 1 3.7642 -1.9104 -5.1432 12 1 3.8518 -2.1203 -2.7289 13 6 2.0401 -0.7213 1.2492 14 7 3.5085 -0.6881 1.2685 15 6 4.0743 -1.8084 0.4858 16 6 5.3709 -1.2941 -0.1666 17 6 5.4828 0.1851 0.2686 18 1 6.1343 0.2835 1.1370 19 6 5.9806 1.0394 -0.8686 20 7 5.3949 1.1519 -2.0168 21 6 5.9523 1.9359 -2.9048 22 6 7.1058 2.5307 -2.4735 23 6 7.9460 3.4493 -3.2457 24 8 8.9538 3.9148 -2.7489 25 8 7.6019 3.7790 -4.5075 26 16 7.3969 1.9951 -0.8202 27 6 4.0214 0.5513 0.6306 28 1 -0.3633 -1.0224 -0.1040 29 1 -0.3633 0.4210 0.9375 30 1 -0.3634 0.6013 -0.8333 31 1 3.1295 -0.7488 -1.2335 32 1 1.6509 -1.7393 -1.2653 33 1 1.7461 -0.1385 -5.6859 34 1 1.7001 -1.7569 1.2351 35 1 1.6537 -0.2241 2.1390 36 1 3.3680 -2.1169 -0.2848 37 1 4.2973 -2.6490 1.1430 38 1 5.3020 -1.3648 -1.2521 39 1 6.2280 -1.8612 0.1967 40 1 5.5408 2.0949 -3.8906 41 1 8.1877 4.3882 -4.9773 42 1 3.9962 1.3843 1.3330 43 1 3.4501 0.7865 -0.2675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604130708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:26 Heat of formation + Delta-G solvation = -28.848120 kcal Electronic energy + Delta-G solvation = -26290.744232 eV Core-core repulsion = 22656.299899 eV Total energy + Delta-G solvation = -3634.444333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44376 -39.95814 -38.91850 -36.18419 -35.15328 -32.65929 -31.66966 -30.08599 -28.93302 -27.71565 -26.01094 -24.56196 -23.34929 -22.91628 -21.64606 -20.42978 -19.71511 -18.74862 -18.38998 -17.61984 -16.86065 -16.72668 -15.86456 -15.74200 -15.31522 -14.48077 -14.41956 -14.24669 -13.94102 -13.63153 -13.50498 -13.24362 -12.99762 -12.64219 -12.25382 -11.79579 -11.72188 -11.63183 -11.56435 -11.42779 -11.25892 -11.13276 -11.01116 -10.91995 -10.76373 -10.58892 -10.35456 -9.78342 -9.72880 -9.52521 -9.47703 -9.43286 -9.06859 -8.90256 -8.45176 -7.80950 -5.96984 -3.92103 0.07200 0.99185 1.57058 2.22406 3.00117 3.06106 3.32220 3.40095 3.41098 3.97313 4.44271 4.50898 4.76903 4.86574 4.88866 5.01000 5.28684 5.37038 5.38583 5.50237 5.55952 5.64945 5.70536 5.92602 5.95783 6.06342 6.11889 6.13954 6.20649 6.25392 6.27759 6.36199 6.41797 6.51885 6.73734 6.93109 7.02331 7.17978 7.27397 7.33130 7.48274 7.65770 7.77225 7.87067 8.60819 9.07763 9.67503 11.16694 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.005262 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.336316 B = 5319.967187 C = 6636.150645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 H 0.069 0.931 4 C -0.021 4.021 5 C -0.502 4.502 6 H 0.070 0.930 7 C 0.074 3.926 8 N -0.906 5.906 9 Si 0.871 3.129 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.261 1.261 13 C 0.045 3.955 14 N -0.512 5.512 15 C 0.022 3.978 16 C -0.118 4.118 17 C -0.023 4.023 18 H 0.101 0.899 19 C 0.080 3.920 20 N -0.451 5.451 21 C 0.154 3.846 22 C -0.323 4.323 23 C 0.572 3.428 24 O -0.521 6.521 25 O -0.502 6.502 26 S 0.208 5.792 27 C 0.026 3.974 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.004 0.996 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.193 0.807 41 H 0.417 0.583 42 H 0.077 0.923 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.122 1.907 8.652 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.135 4.135 3 H 0.087 0.913 4 C -0.058 4.058 5 C -0.540 4.540 6 H 0.088 0.912 7 C -0.126 4.126 8 N -0.546 5.546 9 Si 0.700 3.300 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.186 1.186 13 C -0.083 4.083 14 N -0.235 5.235 15 C -0.106 4.106 16 C -0.158 4.158 17 C -0.046 4.046 18 H 0.119 0.881 19 C -0.194 4.194 20 N -0.163 5.163 21 C -0.008 4.008 22 C -0.445 4.445 23 C 0.416 3.584 24 O -0.412 6.412 25 O -0.314 6.314 26 S 0.469 5.531 27 C -0.103 4.103 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.209 0.791 41 H 0.276 0.724 42 H 0.095 0.905 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.621 1.615 10.097 15.479 hybrid contribution 0.240 -0.201 -2.486 2.506 sum 11.861 1.413 7.610 14.163 Atomic orbital electron populations 1.21637 0.95594 1.01360 1.00121 1.21712 0.96160 1.00190 0.95440 0.91312 1.20019 0.97348 0.95065 0.93397 1.21008 1.32514 1.11598 0.88844 0.91231 1.24885 0.95357 0.96431 0.95938 1.69909 1.46783 1.40130 0.97766 0.86936 0.81182 0.84203 0.77712 1.21070 1.21806 1.18580 1.22466 0.86956 1.00882 0.97997 1.65065 1.08129 1.01821 1.48492 1.23167 0.95865 0.94771 0.96796 1.22508 0.98274 0.92607 1.02385 1.20879 0.98528 0.93500 0.91663 0.88120 1.27708 0.94937 0.99330 0.97417 1.66201 1.31118 1.18496 1.00502 1.22915 0.88848 0.88976 1.00028 1.24840 1.05309 1.13800 1.00508 1.19024 0.81993 0.77825 0.79584 1.90941 1.26310 1.53106 1.70818 1.84612 1.56278 1.63678 1.26822 1.83856 1.24175 1.38045 1.07031 1.23739 0.91877 0.93682 1.01050 0.93621 0.94863 0.91700 0.94277 0.97757 0.93090 0.91593 0.91418 0.90848 0.91025 0.89829 0.90990 0.79056 0.72443 0.90482 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.86 37.16 0.33 -2.00 16 2 C -0.12 -2.16 1.85 -90.62 -0.17 -2.32 16 3 H 0.07 1.34 6.10 -51.93 -0.32 1.03 16 4 C -0.02 -0.48 1.50 -27.88 -0.04 -0.52 16 5 C -0.50 -13.55 9.01 -34.44 -0.31 -13.86 16 6 H 0.07 2.06 7.09 -52.49 -0.37 1.68 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.91 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.04 5.80 56.52 0.33 -5.71 16 13 C 0.05 0.71 5.36 -3.83 -0.02 0.69 16 14 N -0.51 -7.80 5.54 -230.45 -1.28 -9.07 16 15 C 0.02 0.33 5.66 -2.75 -0.02 0.32 16 16 C -0.12 -1.71 5.96 -25.38 -0.15 -1.86 16 17 C -0.02 -0.31 3.54 -89.91 -0.32 -0.63 16 18 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 19 C 0.08 1.19 5.98 -13.31 -0.08 1.11 16 20 N -0.45 -7.96 10.01 -11.26 -0.11 -8.07 16 21 C 0.15 2.45 11.20 -18.48 -0.21 2.24 16 22 C -0.32 -4.63 6.51 -36.79 -0.24 -4.87 16 23 C 0.57 7.75 8.30 34.06 0.28 8.04 16 24 O -0.52 -8.02 17.75 -19.36 -0.34 -8.36 16 25 O -0.50 -5.36 13.23 -40.98 -0.54 -5.91 16 26 S 0.21 2.66 23.00 -107.50 -2.47 0.18 16 27 C 0.03 0.39 4.83 -1.89 -0.01 0.39 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.31 6.93 -51.93 -0.36 0.95 16 31 H 0.04 0.86 2.77 -51.93 -0.14 0.71 16 32 H 0.00 0.10 7.21 -51.93 -0.37 -0.28 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.31 4.81 -51.93 -0.25 1.06 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.45 6.73 -51.93 -0.35 1.10 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.19 2.95 8.06 -52.48 -0.42 2.53 16 41 H 0.42 2.30 9.11 45.56 0.42 2.71 16 42 H 0.08 1.07 8.14 -51.94 -0.42 0.65 16 43 H 0.11 2.00 3.68 -51.93 -0.19 1.80 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -32.51 350.63 -9.34 -41.86 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.94 Total: 5.08 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.05 Total: -11.28 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.61 Total: -43.72 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.89 Total: -14.27 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.47 Total: 0.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.51 -9.34 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604130708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.009 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds