Wall clock time and date at job start Tue Mar 31 2020 13:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46726 * 2 1 4 4 C 1.52999 * 109.47052 * 240.00052 * 2 1 3 5 5 C 1.50708 * 109.46983 * 61.77070 * 4 2 1 6 6 H 1.07997 * 120.00033 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99829 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47399 * 89.99608 * 9 7 5 11 11 H 1.48499 * 109.47107 * 209.99927 * 9 7 5 12 12 H 1.48503 * 109.46999 * 329.99591 * 9 7 5 13 13 C 1.53002 * 109.47402 * 120.00046 * 2 1 3 14 14 N 1.46889 * 109.47269 * 181.58567 * 13 2 1 15 15 C 1.47908 * 111.00113 * 274.36324 * 14 13 2 16 16 C 1.53992 * 107.05781 * 145.84277 * 15 14 13 17 17 C 1.54595 * 105.14288 * 358.77495 * 16 15 14 18 18 H 1.09008 * 110.72278 * 96.57783 * 17 16 15 19 19 C 1.50698 * 110.72531 * 219.68500 * 17 16 15 20 20 N 1.29392 * 124.70829 * 58.56849 * 19 17 16 21 21 C 1.30909 * 117.46646 * 179.97438 * 20 19 17 22 22 C 1.36763 * 113.93504 * 0.24656 * 21 20 19 23 23 C 1.46493 * 126.17660 * 179.75239 * 22 21 20 24 24 O 1.21620 * 119.99829 * 180.02562 * 23 22 21 25 25 O 1.34879 * 120.00540 * 0.02562 * 23 22 21 26 26 S 1.70922 * 124.70301 * 238.52922 * 19 17 16 27 27 C 1.48539 * 111.00147 * 31.76048 * 14 13 2 28 28 H 1.09003 * 109.46952 * 174.18951 * 1 2 3 29 29 H 1.09005 * 109.47087 * 294.18385 * 1 2 3 30 30 H 1.08999 * 109.47255 * 54.18587 * 1 2 3 31 31 H 1.08998 * 109.46871 * 181.77123 * 4 2 1 32 32 H 1.09000 * 109.47137 * 301.77493 * 4 2 1 33 33 H 0.97001 * 120.00109 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46902 * 61.58417 * 13 2 1 35 35 H 1.09006 * 109.46857 * 301.58674 * 13 2 1 36 36 H 1.08991 * 109.91441 * 26.49115 * 15 14 13 37 37 H 1.09002 * 110.07749 * 265.28952 * 15 14 13 38 38 H 1.09001 * 110.30698 * 239.86086 * 16 15 14 39 39 H 1.09002 * 110.30970 * 117.69307 * 16 15 14 40 40 H 1.08004 * 123.03227 * 179.97438 * 21 20 19 41 41 H 0.96694 * 117.00336 * 180.02562 * 25 23 22 42 42 H 1.08989 * 110.66836 * 81.84359 * 27 14 13 43 43 H 1.09003 * 110.66384 * 318.71179 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5738 0.0141 -2.4793 6 1 0.9741 0.9068 -2.3800 7 6 1.9137 -0.4522 -3.7315 8 7 1.5073 0.1898 -4.8049 9 14 2.9515 -1.9958 -3.9034 10 1 2.0635 -3.1840 -3.9744 11 1 3.7642 -1.9104 -5.1432 12 1 3.8518 -2.1203 -2.7289 13 6 2.0401 -0.7213 1.2492 14 7 3.5085 -0.6881 1.2685 15 6 4.0743 -1.8084 0.4858 16 6 5.3709 -1.2941 -0.1666 17 6 5.4828 0.1851 0.2686 18 1 6.1343 0.2835 1.1370 19 6 5.9806 1.0394 -0.8686 20 7 5.3949 1.1519 -2.0168 21 6 5.9523 1.9359 -2.9048 22 6 7.1058 2.5307 -2.4735 23 6 7.9460 3.4493 -3.2457 24 8 8.9538 3.9148 -2.7489 25 8 7.6019 3.7790 -4.5075 26 16 7.3969 1.9951 -0.8202 27 6 4.0214 0.5513 0.6306 28 1 -0.3633 -1.0224 -0.1040 29 1 -0.3633 0.4210 0.9375 30 1 -0.3634 0.6013 -0.8333 31 1 3.1295 -0.7488 -1.2335 32 1 1.6509 -1.7393 -1.2653 33 1 1.7461 -0.1385 -5.6859 34 1 1.7001 -1.7569 1.2351 35 1 1.6537 -0.2241 2.1390 36 1 3.3680 -2.1169 -0.2848 37 1 4.2973 -2.6490 1.1430 38 1 5.3020 -1.3648 -1.2521 39 1 6.2280 -1.8612 0.1967 40 1 5.5408 2.0949 -3.8906 41 1 8.1877 4.3882 -4.9773 42 1 3.9962 1.3843 1.3330 43 1 3.4501 0.7865 -0.2675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604130708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:25 Heat of formation + Delta-G solvation = -52.669824 kcal Electronic energy + Delta-G solvation = -26291.777219 eV Core-core repulsion = 22656.299899 eV Total energy + Delta-G solvation = -3635.477320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57410 -41.08124 -40.12895 -37.18382 -36.59534 -34.53412 -33.11199 -31.36406 -30.14591 -29.44276 -27.21977 -25.87858 -24.94998 -24.14745 -22.84268 -21.75320 -20.87963 -20.16609 -19.48998 -18.89272 -18.69898 -17.82768 -16.98944 -16.90834 -16.60610 -16.30945 -15.65779 -15.41082 -15.32804 -14.98395 -14.75335 -14.59914 -14.47717 -13.98609 -13.93516 -13.44639 -12.89977 -12.78305 -12.74330 -12.71049 -12.65634 -12.58799 -12.38894 -12.27193 -12.12470 -12.04178 -11.76609 -11.61527 -11.27744 -11.24489 -10.89832 -10.64985 -10.63577 -10.56980 -9.98976 -9.12109 -8.18921 -6.16483 -1.04015 -0.05552 0.46662 1.12110 1.30927 1.34418 1.43932 1.85498 2.11006 2.40282 2.87387 3.19653 3.28229 3.67371 3.72605 3.79341 3.93023 4.12004 4.25955 4.29239 4.31149 4.44766 4.47959 4.51944 4.74177 4.80353 4.84610 4.89608 5.00468 5.02562 5.06853 5.11214 5.22091 5.25273 5.37597 5.38550 5.44957 5.58671 5.67026 5.80940 5.97370 6.13535 6.41462 6.61249 6.82929 6.88132 7.45837 8.98174 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.005262 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.336316 B = 5319.967187 C = 6636.150645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 H 0.057 0.943 4 C -0.012 4.012 5 C -0.495 4.495 6 H 0.029 0.971 7 C 0.018 3.982 8 N -0.954 5.954 9 Si 0.928 3.072 10 H -0.280 1.280 11 H -0.296 1.296 12 H -0.238 1.238 13 C 0.053 3.947 14 N -0.501 5.501 15 C 0.019 3.981 16 C -0.118 4.118 17 C -0.019 4.019 18 H 0.137 0.863 19 C 0.067 3.933 20 N -0.497 5.497 21 C 0.136 3.864 22 C -0.331 4.331 23 C 0.578 3.422 24 O -0.540 6.540 25 O -0.498 6.498 26 S 0.280 5.720 27 C 0.023 3.977 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.049 0.951 32 H -0.001 1.001 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.182 0.818 41 H 0.439 0.561 42 H 0.093 0.907 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.256 0.916 11.501 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.131 4.131 3 H 0.075 0.925 4 C -0.049 4.049 5 C -0.533 4.533 6 H 0.047 0.953 7 C -0.178 4.178 8 N -0.596 5.596 9 Si 0.754 3.246 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.161 1.161 13 C -0.075 4.075 14 N -0.223 5.223 15 C -0.109 4.109 16 C -0.158 4.158 17 C -0.042 4.042 18 H 0.155 0.845 19 C -0.206 4.206 20 N -0.210 5.210 21 C -0.025 4.025 22 C -0.454 4.454 23 C 0.422 3.578 24 O -0.433 6.433 25 O -0.313 6.313 26 S 0.541 5.459 27 C -0.106 4.106 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.199 0.801 41 H 0.302 0.698 42 H 0.111 0.889 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.762 0.630 12.959 18.914 hybrid contribution -0.448 0.233 -3.393 3.430 sum 13.313 0.863 9.566 16.417 Atomic orbital electron populations 1.21588 0.95357 1.00998 1.00445 1.21634 0.96352 0.99575 0.95521 0.92484 1.19941 0.97838 0.94199 0.92944 1.21306 1.30827 1.10225 0.90921 0.95306 1.25653 0.96835 0.99598 0.95680 1.70062 1.48984 1.42282 0.98299 0.86006 0.79946 0.80404 0.78215 1.20615 1.22283 1.16113 1.22424 0.87372 1.00957 0.96769 1.65153 1.07556 1.01717 1.47892 1.23224 0.95494 0.95592 0.96599 1.22509 0.99256 0.93676 1.00343 1.21021 0.98061 0.92713 0.92360 0.84479 1.27883 0.95895 0.99838 0.96949 1.66167 1.32946 1.19950 1.01959 1.22771 0.89792 0.90007 0.99960 1.25110 1.04835 1.13491 1.01940 1.18905 0.81395 0.77360 0.80123 1.90933 1.27020 1.53911 1.71452 1.84583 1.56849 1.64075 1.25770 1.83520 1.21639 1.35824 1.04885 1.23675 0.92720 0.94369 0.99879 0.93472 0.91507 0.95189 0.93278 0.98286 0.93272 0.90943 0.89103 0.93847 0.88353 0.93107 0.87639 0.80063 0.69830 0.88850 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.86 71.98 0.64 -3.88 16 2 C -0.11 -4.10 1.85 -10.79 -0.02 -4.12 16 3 H 0.06 2.25 6.10 -2.39 -0.01 2.24 16 4 C -0.01 -0.55 1.50 29.85 0.04 -0.51 16 5 C -0.49 -27.91 9.01 25.60 0.23 -27.68 16 6 H 0.03 1.82 7.09 -2.91 -0.02 1.80 16 7 C 0.02 1.06 5.47 84.65 0.46 1.53 16 8 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 9 Si 0.93 45.49 27.47 68.60 1.88 47.38 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.24 -10.65 5.80 99.48 0.58 -10.07 16 13 C 0.05 1.52 5.36 86.31 0.46 1.98 16 14 N -0.50 -13.69 5.54 -883.01 -4.89 -18.57 16 15 C 0.02 0.52 5.66 86.44 0.49 1.01 16 16 C -0.12 -3.09 5.96 31.47 0.19 -2.90 16 17 C -0.02 -0.46 3.54 -10.33 -0.04 -0.50 16 18 H 0.14 2.36 8.14 -2.38 -0.02 2.34 16 19 C 0.07 1.89 5.98 88.47 0.53 2.42 16 20 N -0.50 -17.68 10.01 -189.53 -1.90 -19.58 16 21 C 0.14 4.44 11.20 84.48 0.95 5.38 16 22 C -0.33 -9.26 6.51 24.08 0.16 -9.11 16 23 C 0.58 15.07 8.30 69.97 0.58 15.65 16 24 O -0.54 -15.82 17.75 19.45 0.35 -15.48 16 25 O -0.50 -10.20 13.23 -57.93 -0.77 -10.97 16 26 S 0.28 6.48 23.00 -56.49 -1.30 5.18 16 27 C 0.02 0.66 4.83 86.65 0.42 1.08 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.03 1.25 6.93 -2.39 -0.02 1.23 16 31 H 0.05 2.15 2.77 -2.39 -0.01 2.14 16 32 H 0.00 -0.05 7.21 -2.39 -0.02 -0.07 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.07 2.01 7.83 -2.38 -0.02 2.00 16 35 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.04 1.46 4.81 -2.39 -0.01 1.45 16 37 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.68 6.73 -2.39 -0.02 1.66 16 39 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.18 5.99 8.06 -2.91 -0.02 5.97 16 41 H 0.44 4.20 9.11 -74.06 -0.67 3.52 16 42 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.07 2.57 3.68 -2.39 -0.01 2.56 16 Total: -1.00 -73.66 350.63 -0.98 -74.63 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.26 Total: 17.10 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.09 Total: -19.65 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -6.49 Total: -98.21 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.42 Total: -26.44 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.30 Total: 5.18 kcal Total: -73.66 -0.98 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604130708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.965 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds