Wall clock time and date at job start Tue Mar 31 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30677 * 125.94953 * 2 1 4 4 N 1.40017 * 108.52611 * 179.97438 * 3 2 1 5 5 C 1.46491 * 125.89647 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47184 * 305.02291 * 5 4 3 7 7 O 1.21290 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00317 * 180.02562 * 6 5 4 9 9 C 1.37095 * 120.00249 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00031 * 322.47370 * 9 8 6 11 11 C 1.38943 * 120.00108 * 142.47450 * 9 8 6 12 12 N 1.31411 * 120.00245 * 157.58801 * 11 9 8 13 13 Si 1.86804 * 119.99954 * 337.58824 * 11 9 8 14 14 H 1.48497 * 109.47259 * 95.70841 * 13 11 9 15 15 H 1.48504 * 109.46921 * 215.70314 * 13 11 9 16 16 H 1.48494 * 109.47524 * 335.70516 * 13 11 9 17 17 C 1.46503 * 119.99727 * 359.97438 * 8 6 5 18 18 C 1.47193 * 109.47162 * 83.79797 * 17 8 6 19 19 N 7.37462 * 164.02682 * 324.66683 * 2 1 3 20 20 C 1.34829 * 108.20855 * 0.21978 * 4 3 2 21 21 C 1.36433 * 107.60973 * 359.64325 * 20 4 3 22 22 C 1.48482 * 126.22085 * 180.13115 * 21 20 4 23 23 C 1.39300 * 120.11162 * 129.98941 * 22 21 20 24 24 C 1.38037 * 119.87788 * 179.69903 * 23 22 21 25 25 C 1.38312 * 120.11305 * 0.57933 * 24 23 22 26 26 C 1.38315 * 120.24075 * 359.72013 * 25 24 23 27 27 C 1.38026 * 120.11590 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47294 * 90.02207 * 1 2 3 29 29 H 1.08999 * 109.47295 * 210.02632 * 1 2 3 30 30 H 1.09006 * 109.47458 * 330.02382 * 1 2 3 31 31 H 1.09007 * 109.47396 * 65.02195 * 5 4 3 32 32 H 1.08995 * 109.47332 * 185.01909 * 5 4 3 33 33 H 0.97000 * 120.00299 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.47027 * 203.79799 * 17 8 6 35 35 H 1.09003 * 109.47474 * 323.79475 * 17 8 6 36 36 H 1.08004 * 126.19476 * 179.77199 * 20 4 3 37 37 H 1.08004 * 120.06586 * 359.97438 * 23 22 21 38 38 H 1.07994 * 119.94060 * 180.29602 * 24 23 22 39 39 H 1.08001 * 119.87957 * 179.69432 * 25 24 23 40 40 H 1.08006 * 119.94369 * 180.02562 * 26 25 24 41 41 H 1.08006 * 120.05986 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0579 0.0000 4 7 3.6100 0.6386 0.0006 5 6 4.7849 1.5137 0.0003 6 6 4.7009 2.4669 -1.1640 7 8 3.7532 2.4196 -1.9194 8 7 5.6795 3.3713 -1.3664 9 6 5.6033 4.2381 -2.4258 10 1 5.2064 3.9010 -3.3719 11 6 6.0369 5.5504 -2.2823 12 7 6.3833 6.2474 -3.3411 13 14 6.1274 6.3238 -0.5843 14 1 7.5099 6.1991 -0.0566 15 1 5.7597 7.7597 -0.6742 16 1 5.1848 5.6275 0.3277 17 6 6.8245 3.4281 -0.4543 18 6 7.8248 2.4272 -0.8596 19 7 8.5968 1.6556 -1.1737 20 6 3.6285 -0.7095 -0.0040 21 6 2.3339 -1.1401 0.0007 22 6 1.8794 -2.5536 0.0009 23 6 0.9319 -2.9829 0.9275 24 6 0.5082 -4.2966 0.9193 25 6 1.0315 -5.1889 0.0011 26 6 1.9771 -4.7693 -0.9170 27 6 2.4031 -3.4564 -0.9216 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.8169 2.0794 0.9315 32 1 5.6878 0.9097 -0.0890 33 1 6.6864 7.1634 -3.2409 34 1 7.2697 4.4224 -0.4914 35 1 6.4906 3.2174 0.5617 36 1 4.5088 -1.3353 -0.0082 37 1 0.5263 -2.2882 1.6481 38 1 -0.2298 -4.6294 1.6341 39 1 0.7009 -6.2170 0.0013 40 1 2.3823 -5.4700 -1.6321 41 1 3.1412 -3.1296 -1.6392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277488708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:19 Heat of formation + Delta-G solvation = 120.345973 kcal Electronic energy + Delta-G solvation = -26022.664204 eV Core-core repulsion = 22291.538212 eV Total energy + Delta-G solvation = -3731.125992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19121 -39.25197 -38.76155 -36.44328 -34.92614 -33.87016 -32.35568 -31.98876 -30.99640 -29.97764 -28.43018 -27.95422 -26.55354 -24.44183 -22.71007 -22.42470 -20.48094 -19.99426 -19.16910 -18.65926 -17.17837 -16.96368 -16.67269 -16.23162 -15.58823 -15.25163 -15.00414 -14.64476 -14.44239 -13.95907 -13.89646 -13.59669 -13.54194 -13.37528 -13.17519 -12.94605 -12.72159 -12.64162 -12.52421 -12.45549 -12.01938 -11.98880 -11.91266 -11.65625 -11.35987 -11.10217 -10.98887 -10.64514 -10.30071 -10.13656 -9.44014 -9.24519 -9.18834 -8.98807 -8.73663 -8.20023 -7.89858 -6.60454 -4.23127 1.17831 1.35488 2.08872 2.53592 2.79826 2.87434 2.89965 2.96638 3.06631 3.11319 3.31497 3.79420 3.92030 4.04824 4.27297 4.54059 4.79593 4.82821 4.88549 4.91333 4.97532 5.03330 5.07558 5.11561 5.16872 5.31055 5.37993 5.44651 5.50950 5.57643 5.72568 5.84032 5.91631 5.96013 6.04304 6.15086 6.37697 6.44843 6.61032 6.82227 6.95662 7.03481 7.25693 7.77277 7.94876 7.95591 8.18954 8.66865 9.00563 9.34918 10.50772 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002972 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.348335 B = 9419.404549 C =10047.993188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.078 3.922 3 N -0.252 5.252 4 N -0.346 5.346 5 C 0.109 3.891 6 C 0.461 3.539 7 O -0.513 6.513 8 N -0.460 5.460 9 C -0.324 4.324 10 H 0.110 0.890 11 C 0.064 3.936 12 N -0.850 5.850 13 Si 0.860 3.140 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.255 1.255 17 C 0.175 3.825 18 C 0.201 3.799 19 N -0.435 5.435 20 C 0.072 3.928 21 C -0.213 4.213 22 C 0.015 3.985 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.278 0.722 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.172 0.828 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 -15.422 12.324 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 N -0.073 5.073 4 N -0.125 5.125 5 C -0.016 4.016 6 C 0.247 3.753 7 O -0.389 6.389 8 N -0.184 5.184 9 C -0.451 4.451 10 H 0.128 0.872 11 C -0.144 4.144 12 N -0.484 5.484 13 Si 0.685 3.315 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.178 1.178 17 C 0.047 3.953 18 C -0.118 4.118 19 N -0.114 5.114 20 C -0.075 4.075 21 C -0.224 4.224 22 C 0.013 3.987 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.151 4.151 26 C -0.135 4.135 27 C -0.134 4.134 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.189 0.811 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.040 -14.988 11.337 19.739 hybrid contribution 0.216 0.111 0.763 0.800 sum -5.823 -14.877 12.099 20.041 Atomic orbital electron populations 1.20195 0.86892 1.02882 1.03097 1.22375 0.96765 0.89693 1.00189 1.77429 0.85811 1.21945 1.22147 1.47833 1.05233 1.03882 1.55592 1.21739 0.85021 0.93730 1.01127 1.20148 0.83533 0.84342 0.87248 1.90689 1.31613 1.70209 1.46359 1.43581 1.14302 1.33242 1.27314 1.19018 1.45031 0.90358 0.90648 0.87223 1.25377 0.95385 0.95976 0.97623 1.69738 1.37770 1.11038 1.29877 0.87201 0.78568 0.80568 0.85133 1.19579 1.20378 1.17831 1.19645 0.84880 0.95825 0.94900 1.30048 0.94170 0.94189 0.93394 1.81088 1.10592 1.11395 1.08318 1.22471 0.98805 0.84695 1.01559 1.18603 0.91675 0.92603 1.19550 1.18061 0.95613 0.90445 0.94537 1.21207 0.97784 0.95730 0.98557 1.21053 1.00069 0.93533 0.99033 1.21111 0.98052 0.99469 0.96422 1.21065 0.97744 0.95813 0.98923 1.21274 1.00484 0.93149 0.98508 0.90598 0.90646 0.90898 0.87196 0.87150 0.91108 0.86333 0.87354 0.81063 0.85980 0.86265 0.86491 0.86266 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.26 36.00 0.37 -0.51 16 2 C 0.08 1.23 7.23 -82.10 -0.59 0.64 16 3 N -0.25 -4.74 11.60 33.84 0.39 -4.35 16 4 N -0.35 -5.83 3.39 -62.28 -0.21 -6.04 16 5 C 0.11 1.69 5.59 -5.20 -0.03 1.67 16 6 C 0.46 9.77 7.59 -10.98 -0.08 9.68 16 7 O -0.51 -13.32 15.57 5.55 0.09 -13.23 16 8 N -0.46 -9.84 2.15 -117.93 -0.25 -10.09 16 9 C -0.32 -8.41 9.36 -14.94 -0.14 -8.55 16 10 H 0.11 3.30 7.91 -52.49 -0.42 2.88 16 11 C 0.06 1.62 5.26 -17.47 -0.09 1.53 16 12 N -0.85 -22.96 13.96 55.50 0.77 -22.19 16 13 Si 0.86 17.61 25.05 -169.99 -4.26 13.36 16 14 H -0.27 -4.91 6.69 56.52 0.38 -4.53 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.25 -4.98 7.11 56.52 0.40 -4.58 16 17 C 0.17 2.89 4.27 -6.83 -0.03 2.86 16 18 C 0.20 3.45 15.00 -20.77 -0.31 3.14 16 19 N -0.44 -8.09 18.54 42.15 0.78 -7.31 16 20 C 0.07 1.02 11.31 -16.89 -0.19 0.83 16 21 C -0.21 -3.06 5.58 -105.34 -0.59 -3.64 16 22 C 0.01 0.18 5.61 -104.89 -0.59 -0.41 16 23 C -0.11 -1.21 8.56 -39.26 -0.34 -1.55 16 24 C -0.12 -1.09 10.04 -39.63 -0.40 -1.49 16 25 C -0.13 -1.20 10.04 -39.53 -0.40 -1.60 16 26 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 27 C -0.12 -1.33 9.70 -39.27 -0.38 -1.71 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.74 5.86 -51.93 -0.30 0.44 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 1.37 7.42 -51.92 -0.39 0.98 16 32 H 0.11 1.39 7.40 -51.93 -0.38 1.00 16 33 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.12 2.05 3.61 -51.93 -0.19 1.86 16 35 H 0.11 1.24 6.70 -51.93 -0.35 0.90 16 36 H 0.17 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.12 1.17 7.12 -52.48 -0.37 0.79 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -33.73 357.48 -6.00 -39.74 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.52 Total: 5.39 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -4.18 Total: -0.66 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 1.48 Total: -49.98 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -4.26 Total: 13.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.73 -6.00 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277488708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.083 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds