Wall clock time and date at job start Tue Mar 31 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30677 * 125.94953 * 2 1 4 4 N 1.40017 * 108.52611 * 179.97438 * 3 2 1 5 5 C 1.46491 * 125.89647 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47184 * 305.02291 * 5 4 3 7 7 O 1.21290 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00317 * 180.02562 * 6 5 4 9 9 C 1.37095 * 120.00249 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00031 * 322.47370 * 9 8 6 11 11 C 1.38943 * 120.00108 * 142.47450 * 9 8 6 12 12 N 1.31411 * 120.00245 * 157.58801 * 11 9 8 13 13 Si 1.86804 * 119.99954 * 337.58824 * 11 9 8 14 14 H 1.48497 * 109.47259 * 95.70841 * 13 11 9 15 15 H 1.48504 * 109.46921 * 215.70314 * 13 11 9 16 16 H 1.48494 * 109.47524 * 335.70516 * 13 11 9 17 17 C 1.46503 * 119.99727 * 359.97438 * 8 6 5 18 18 C 1.47193 * 109.47162 * 83.79797 * 17 8 6 19 19 N 7.37462 * 164.02682 * 324.66683 * 2 1 3 20 20 C 1.34829 * 108.20855 * 0.21978 * 4 3 2 21 21 C 1.36433 * 107.60973 * 359.64325 * 20 4 3 22 22 C 1.48482 * 126.22085 * 180.13115 * 21 20 4 23 23 C 1.39300 * 120.11162 * 129.98941 * 22 21 20 24 24 C 1.38037 * 119.87788 * 179.69903 * 23 22 21 25 25 C 1.38312 * 120.11305 * 0.57933 * 24 23 22 26 26 C 1.38315 * 120.24075 * 359.72013 * 25 24 23 27 27 C 1.38026 * 120.11590 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47294 * 90.02207 * 1 2 3 29 29 H 1.08999 * 109.47295 * 210.02632 * 1 2 3 30 30 H 1.09006 * 109.47458 * 330.02382 * 1 2 3 31 31 H 1.09007 * 109.47396 * 65.02195 * 5 4 3 32 32 H 1.08995 * 109.47332 * 185.01909 * 5 4 3 33 33 H 0.97000 * 120.00299 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.47027 * 203.79799 * 17 8 6 35 35 H 1.09003 * 109.47474 * 323.79475 * 17 8 6 36 36 H 1.08004 * 126.19476 * 179.77199 * 20 4 3 37 37 H 1.08004 * 120.06586 * 359.97438 * 23 22 21 38 38 H 1.07994 * 119.94060 * 180.29602 * 24 23 22 39 39 H 1.08001 * 119.87957 * 179.69432 * 25 24 23 40 40 H 1.08006 * 119.94369 * 180.02562 * 26 25 24 41 41 H 1.08006 * 120.05986 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0579 0.0000 4 7 3.6100 0.6386 0.0006 5 6 4.7849 1.5137 0.0003 6 6 4.7009 2.4669 -1.1640 7 8 3.7532 2.4196 -1.9194 8 7 5.6795 3.3713 -1.3664 9 6 5.6033 4.2381 -2.4258 10 1 5.2064 3.9010 -3.3719 11 6 6.0369 5.5504 -2.2823 12 7 6.3833 6.2474 -3.3411 13 14 6.1274 6.3238 -0.5843 14 1 7.5099 6.1991 -0.0566 15 1 5.7597 7.7597 -0.6742 16 1 5.1848 5.6275 0.3277 17 6 6.8245 3.4281 -0.4543 18 6 7.8248 2.4272 -0.8596 19 7 8.5968 1.6556 -1.1737 20 6 3.6285 -0.7095 -0.0040 21 6 2.3339 -1.1401 0.0007 22 6 1.8794 -2.5536 0.0009 23 6 0.9319 -2.9829 0.9275 24 6 0.5082 -4.2966 0.9193 25 6 1.0315 -5.1889 0.0011 26 6 1.9771 -4.7693 -0.9170 27 6 2.4031 -3.4564 -0.9216 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.8169 2.0794 0.9315 32 1 5.6878 0.9097 -0.0890 33 1 6.6864 7.1634 -3.2409 34 1 7.2697 4.4224 -0.4914 35 1 6.4906 3.2174 0.5617 36 1 4.5088 -1.3353 -0.0082 37 1 0.5263 -2.2882 1.6481 38 1 -0.2298 -4.6294 1.6341 39 1 0.7009 -6.2170 0.0013 40 1 2.3823 -5.4700 -1.6321 41 1 3.1412 -3.1296 -1.6392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277488708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:19 Heat of formation + Delta-G solvation = 98.842896 kcal Electronic energy + Delta-G solvation = -26023.596648 eV Core-core repulsion = 22291.538212 eV Total energy + Delta-G solvation = -3732.058435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32983 -40.78920 -39.61456 -37.96655 -36.55427 -35.07611 -34.20398 -32.93110 -31.79972 -31.11441 -29.45463 -29.43672 -27.94819 -25.95794 -23.62290 -23.23345 -21.62372 -21.30532 -20.53619 -20.19485 -18.56194 -18.20890 -18.08262 -17.38731 -17.00472 -16.37833 -15.99136 -15.86193 -15.67121 -15.31238 -15.19843 -14.94777 -14.70030 -14.46839 -14.32765 -14.17904 -14.05366 -13.87363 -13.74185 -13.49658 -13.41079 -13.21074 -13.03196 -12.96049 -12.70038 -12.21932 -12.14822 -11.86010 -11.82237 -11.39214 -11.17654 -10.76829 -10.18997 -10.04933 -10.03469 -9.74273 -8.90579 -8.52912 -6.23383 0.35263 0.59901 0.95432 1.22363 1.33423 1.37560 1.52161 1.53536 1.68216 1.75147 1.82902 2.19714 2.57937 2.76627 3.00577 3.09553 3.48279 3.65394 3.84560 3.93699 3.99695 4.11163 4.11469 4.17784 4.24134 4.27734 4.36851 4.41348 4.69540 4.70926 4.77357 4.91178 4.98055 5.03525 5.23849 5.26825 5.39821 5.57724 5.71381 5.75582 5.83202 5.95124 6.01459 6.20705 6.36667 6.44599 6.79903 6.81876 7.09352 7.61967 8.63852 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002972 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.348335 B = 9419.404549 C =10047.993188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.068 3.932 3 N -0.307 5.307 4 N -0.361 5.361 5 C 0.117 3.883 6 C 0.456 3.544 7 O -0.575 6.575 8 N -0.468 5.468 9 C -0.342 4.342 10 H 0.040 0.960 11 C 0.013 3.987 12 N -0.907 5.907 13 Si 0.931 3.069 14 H -0.220 1.220 15 H -0.290 1.290 16 H -0.233 1.233 17 C 0.173 3.827 18 C 0.218 3.782 19 N -0.461 5.461 20 C 0.068 3.932 21 C -0.215 4.215 22 C -0.005 4.005 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.131 4.131 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.283 0.717 34 H 0.119 0.881 35 H 0.175 0.825 36 H 0.203 0.797 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 -17.314 16.359 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 N -0.129 5.129 4 N -0.141 5.141 5 C -0.008 4.008 6 C 0.245 3.755 7 O -0.455 6.455 8 N -0.192 5.192 9 C -0.470 4.470 10 H 0.058 0.942 11 C -0.190 4.190 12 N -0.543 5.543 13 Si 0.751 3.249 14 H -0.144 1.144 15 H -0.217 1.217 16 H -0.155 1.155 17 C 0.047 3.953 18 C -0.101 4.101 19 N -0.140 5.140 20 C -0.078 4.078 21 C -0.227 4.227 22 C -0.007 4.007 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.150 4.150 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.192 0.808 36 H 0.220 0.780 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.693 -16.919 15.392 23.571 hybrid contribution 0.038 0.555 -0.640 0.848 sum -5.655 -16.364 14.752 22.746 Atomic orbital electron populations 1.20301 0.85114 1.04230 1.03266 1.22952 0.98124 0.89787 0.99097 1.77335 0.87210 1.23871 1.24464 1.47929 1.04861 1.04750 1.56556 1.21869 0.86065 0.93351 0.99473 1.21197 0.82268 0.84261 0.87783 1.90657 1.34049 1.71906 1.48868 1.43574 1.16171 1.32542 1.26922 1.18500 1.46058 0.92292 0.90107 0.94243 1.26298 0.94096 0.95712 1.02939 1.69877 1.39471 1.11633 1.33279 0.86095 0.81683 0.78286 0.78822 1.14352 1.21673 1.15500 1.20023 0.82964 0.95727 0.96551 1.30050 0.93736 0.93711 0.92576 1.81119 1.11455 1.12431 1.08954 1.23045 1.00082 0.84122 1.00532 1.18914 0.91631 0.93422 1.18728 1.18080 0.97095 0.89519 0.95977 1.21346 0.97379 0.96711 0.98332 1.21388 1.00087 0.92824 0.99292 1.21485 0.97089 1.00772 0.95503 1.21322 0.97868 0.95371 0.99510 1.21340 1.00952 0.94033 0.98647 0.90909 0.88240 0.90577 0.83122 0.83758 0.90721 0.86358 0.80779 0.78015 0.85272 0.83634 0.83870 0.84529 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 10.26 71.23 0.73 -0.98 16 2 C 0.07 2.15 7.23 43.37 0.31 2.47 16 3 N -0.31 -11.64 11.60 -46.86 -0.54 -12.18 16 4 N -0.36 -11.78 3.39 -350.97 -1.19 -12.97 16 5 C 0.12 3.32 5.59 85.63 0.48 3.80 16 6 C 0.46 19.34 7.59 87.66 0.67 20.00 16 7 O -0.58 -31.41 15.57 -3.06 -0.05 -31.46 16 8 N -0.47 -19.85 2.15 -645.42 -1.39 -21.24 16 9 C -0.34 -18.68 9.36 84.04 0.79 -17.89 16 10 H 0.04 2.64 7.91 -2.91 -0.02 2.61 16 11 C 0.01 0.66 5.26 84.92 0.45 1.11 16 12 N -0.91 -51.29 13.96 21.66 0.30 -50.99 16 13 Si 0.93 34.89 25.05 68.60 1.72 36.61 16 14 H -0.22 -6.56 6.69 99.48 0.67 -5.89 16 15 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.23 -7.86 7.11 99.48 0.71 -7.15 16 17 C 0.17 5.11 4.27 84.57 0.36 5.47 16 18 C 0.22 6.92 15.00 89.44 1.34 8.26 16 19 N -0.46 -16.26 18.54 20.00 0.37 -15.89 16 20 C 0.07 1.86 11.31 83.81 0.95 2.81 16 21 C -0.22 -6.07 5.58 -20.33 -0.11 -6.18 16 22 C -0.01 -0.13 5.61 -20.04 -0.11 -0.24 16 23 C -0.12 -2.29 8.56 22.48 0.19 -2.10 16 24 C -0.12 -1.80 10.04 22.24 0.22 -1.58 16 25 C -0.13 -1.95 10.04 22.31 0.22 -1.73 16 26 C -0.12 -2.16 10.03 22.24 0.22 -1.93 16 27 C -0.13 -2.89 9.70 22.47 0.22 -2.67 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 1.84 5.86 -2.39 -0.01 1.83 16 30 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.15 3.01 7.42 -2.38 -0.02 3.00 16 32 H 0.14 3.08 7.40 -2.39 -0.02 3.06 16 33 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.12 3.58 3.61 -2.38 -0.01 3.57 16 35 H 0.18 2.86 6.70 -2.39 -0.02 2.84 16 36 H 0.20 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.13 2.20 7.12 -2.91 -0.02 2.18 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.11 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -83.05 357.48 7.18 -75.87 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 1.04 Total: 23.63 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.93 Total: 8.62 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -2.45 Total: -113.28 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.46 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 1.72 Total: 36.61 kcal Total: -83.05 7.18 -75.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277488708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.716 kcal (2) G-P(sol) polarization free energy of solvation -83.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds