Wall clock time and date at job start Tue Mar 31 2020 13:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35355 * 126.44027 * 2 1 4 4 C 1.41529 * 105.56155 * 179.97438 * 3 2 1 5 5 C 1.47670 * 126.44690 * 180.02562 * 4 3 2 6 6 O 1.21572 * 119.99856 * 1.08518 * 5 4 3 7 7 N 1.34772 * 120.00143 * 181.08953 * 5 4 3 8 8 C 1.46508 * 119.99955 * 354.82527 * 7 5 4 9 9 C 1.46499 * 120.00112 * 174.82809 * 7 5 4 10 10 C 1.50700 * 109.46949 * 89.99837 * 9 7 5 11 11 H 1.07995 * 120.00337 * 0.02562 * 10 9 7 12 12 C 1.37881 * 119.99763 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99841 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47070 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46941 * 120.00162 * 14 12 10 17 17 H 1.48495 * 109.47000 * 239.99857 * 14 12 10 18 18 N 1.31856 * 107.11345 * 359.97438 * 4 3 2 19 19 N 1.28485 * 110.11935 * 359.74374 * 18 4 3 20 20 C 1.40130 * 124.95740 * 180.28430 * 19 18 4 21 21 C 1.38992 * 119.99461 * 220.23952 * 20 19 18 22 22 C 1.38214 * 120.23944 * 179.97438 * 21 20 19 23 23 C 1.38012 * 120.22390 * 359.97438 * 22 21 20 24 24 C 1.39640 * 119.98954 * 0.02562 * 23 22 21 25 25 C 1.43199 * 120.12094 * 180.02562 * 24 23 22 26 26 N 7.04712 * 104.43057 * 160.92889 * 2 1 3 27 27 C 1.38563 * 119.99502 * 39.96677 * 20 19 18 28 28 H 1.09008 * 109.47099 * 85.49113 * 1 2 3 29 29 H 1.09002 * 109.47230 * 325.49573 * 1 2 3 30 30 H 1.08997 * 109.47543 * 205.49611 * 1 2 3 31 31 H 1.08003 * 127.21746 * 359.96670 * 3 2 1 32 32 H 1.09004 * 109.47085 * 84.13883 * 8 7 5 33 33 H 1.09002 * 109.47007 * 204.13880 * 8 7 5 34 34 H 1.09001 * 109.47257 * 324.14202 * 8 7 5 35 35 H 1.08994 * 109.47066 * 209.99755 * 9 7 5 36 36 H 1.08994 * 109.47001 * 330.00064 * 9 7 5 37 37 H 0.96997 * 120.00472 * 179.97438 * 13 12 10 38 38 H 1.08005 * 119.87850 * 359.95548 * 21 20 19 39 39 H 1.07997 * 119.88655 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00262 * 180.02562 * 23 22 21 41 41 H 1.07995 * 120.11579 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3109 1.0889 0.0000 4 6 3.6333 0.5845 0.0006 5 6 4.8763 1.3817 0.0014 6 8 4.8196 2.5959 0.0215 7 7 6.0735 0.7633 -0.0203 8 6 6.1453 -0.6973 0.0699 9 6 7.3032 1.5514 -0.1339 10 6 7.7974 1.9126 1.2432 11 1 7.2505 1.5873 2.1157 12 6 8.9478 2.6585 1.3891 13 7 9.6135 3.0551 0.3266 14 14 9.5600 3.1068 3.0961 15 1 8.6386 2.5445 4.1159 16 1 10.9208 2.5470 3.2967 17 1 9.6077 4.5847 3.2325 18 7 3.5467 -0.7312 0.0015 19 7 2.3138 -1.0930 0.0069 20 6 1.8668 -2.4211 0.0150 21 6 0.7721 -2.7905 -0.7576 22 6 0.3272 -4.0990 -0.7538 23 6 0.9674 -5.0482 0.0169 24 6 2.0682 -4.6875 0.7967 25 6 2.7349 -5.6702 1.5969 26 7 3.2631 -6.4502 2.2299 27 6 2.5197 -3.3670 0.7889 28 1 -0.3634 0.0808 -1.0246 29 1 -0.3634 0.8469 0.5821 30 1 -0.3634 -0.9275 0.4423 31 1 2.0070 2.1253 -0.0005 32 1 6.0062 -1.1297 -0.9210 33 1 7.1200 -0.9897 0.4604 34 1 5.3631 -1.0590 0.7372 35 1 8.0635 0.9660 -0.6508 36 1 7.1003 2.4620 -0.6975 37 1 10.4226 3.5802 0.4291 38 1 0.2670 -2.0522 -1.3628 39 1 -0.5243 -4.3797 -1.3559 40 1 0.6170 -6.0698 0.0168 41 1 3.3735 -3.0829 1.3861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356221663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:52 Heat of formation + Delta-G solvation = 119.768328 kcal Electronic energy + Delta-G solvation = -25982.349392 eV Core-core repulsion = 22251.198352 eV Total energy + Delta-G solvation = -3731.151040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.96671 -39.94445 -38.55273 -36.90839 -34.80278 -33.96600 -33.11398 -32.48831 -31.79509 -29.86377 -27.94228 -27.08655 -25.91123 -24.66301 -24.50563 -22.89138 -21.46234 -21.35057 -19.07897 -18.34722 -17.04074 -16.91472 -16.63174 -16.42070 -16.03445 -15.52027 -15.15671 -14.58020 -14.55160 -14.25696 -14.05045 -13.96196 -13.67454 -13.34819 -13.31408 -13.24091 -12.95962 -12.77197 -12.48355 -12.27684 -12.17507 -12.06268 -11.98532 -11.84025 -11.16838 -10.88437 -10.59823 -10.41839 -10.18052 -10.06428 -9.65910 -9.56187 -9.16595 -8.97787 -8.70738 -8.39403 -7.57848 -5.99891 -4.04107 0.05889 0.43307 1.74197 2.06788 2.20799 2.33755 2.44890 3.25877 3.33493 3.33867 3.40996 3.46045 3.92424 4.03805 4.15130 4.31621 4.36278 4.40112 4.49544 4.52073 4.74247 4.84519 4.90474 5.17197 5.19101 5.33122 5.39623 5.50685 5.54267 5.59883 5.62907 5.65643 5.87943 5.94562 6.02047 6.18039 6.35193 6.51481 6.81118 7.03078 7.12599 7.45875 7.58135 7.88212 7.97566 8.27205 8.44298 8.93117 9.09783 9.60608 11.08263 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.003113 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.345430 B = 8993.788704 C =10341.083176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.009 3.991 3 C -0.170 4.170 4 C 0.021 3.979 5 C 0.583 3.417 6 O -0.530 6.530 7 N -0.585 5.585 8 C 0.088 3.912 9 C 0.245 3.755 10 C -0.523 4.523 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.282 1.282 18 N -0.257 5.257 19 N -0.255 5.255 20 C 0.144 3.856 21 C -0.092 4.092 22 C -0.100 4.100 23 C -0.069 4.069 24 C -0.008 4.008 25 C 0.252 3.748 26 N -0.403 5.403 27 C -0.057 4.057 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.352 -15.633 -4.169 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.141 4.141 5 C 0.367 3.633 6 O -0.405 6.405 7 N -0.316 5.316 8 C -0.057 4.057 9 C 0.126 3.874 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.208 1.208 18 N -0.089 5.089 19 N -0.037 5.037 20 C 0.053 3.947 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.012 4.012 25 C -0.064 4.064 26 N -0.077 5.077 27 C -0.079 4.079 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.710 -17.111 -3.226 28.617 hybrid contribution -0.057 1.255 0.678 1.427 sum -22.767 -15.857 -2.548 27.861 Atomic orbital electron populations 1.20471 0.86668 1.03944 1.03331 1.21552 0.95227 0.85992 1.08327 1.21601 0.90646 0.99559 1.07958 1.22580 0.96147 0.89184 1.06232 1.16881 0.81450 0.86373 0.78595 1.90776 1.86113 1.12705 1.50920 1.48055 1.07073 1.07337 1.69125 1.21816 1.02529 0.80548 1.00777 1.19370 0.78964 0.91352 0.97672 1.21473 1.08599 1.33643 0.92514 0.92314 1.24931 0.96505 0.95590 0.97098 1.69939 1.17644 1.37402 1.28497 0.86436 0.78398 0.78303 0.84261 1.19798 1.21000 1.20846 1.74030 0.99469 1.15248 1.20137 1.42800 1.03811 1.03911 1.53222 1.17244 0.96912 0.81285 0.99232 1.21387 0.95565 0.97599 0.96735 1.20965 1.00392 0.91416 0.99087 1.21324 0.93025 1.00691 0.93919 1.15715 0.97046 0.89594 0.98817 1.25433 0.93861 0.93424 0.93681 1.81260 1.07915 1.09576 1.08966 1.21085 0.99536 0.90587 0.96686 0.90150 0.89432 0.90998 0.81605 0.93810 0.91183 0.90880 0.94665 0.93745 0.92789 0.83941 0.83577 0.84102 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 8.75 36.00 0.31 -0.21 16 2 C 0.01 0.10 6.74 -81.84 -0.55 -0.45 16 3 C -0.17 -2.49 10.72 -39.36 -0.42 -2.92 16 4 C 0.02 0.38 6.82 -82.75 -0.56 -0.18 16 5 C 0.58 13.30 7.66 -12.41 -0.10 13.20 16 6 O -0.53 -13.93 16.55 5.30 0.09 -13.84 16 7 N -0.59 -13.49 2.86 -184.14 -0.53 -14.02 16 8 C 0.09 1.62 9.38 59.85 0.56 2.18 16 9 C 0.25 6.66 5.10 -5.19 -0.03 6.63 16 10 C -0.52 -15.32 9.39 -34.44 -0.32 -15.64 16 11 H 0.06 1.74 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 14 Si 0.90 22.39 29.54 -169.99 -5.02 17.36 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 N -0.26 -4.01 8.31 33.42 0.28 -3.73 16 19 N -0.25 -3.09 3.45 -6.88 -0.02 -3.11 16 20 C 0.14 1.27 6.05 -83.66 -0.51 0.76 16 21 C -0.09 -0.50 8.17 -39.31 -0.32 -0.82 16 22 C -0.10 -0.33 10.02 -39.67 -0.40 -0.72 16 23 C -0.07 -0.29 9.75 -39.14 -0.38 -0.67 16 24 C -0.01 -0.05 5.73 -106.96 -0.61 -0.67 16 25 C 0.25 2.32 15.32 -22.51 -0.34 1.97 16 26 N -0.40 -4.77 18.53 41.80 0.77 -4.00 16 27 C -0.06 -0.49 9.43 -38.97 -0.37 -0.86 16 28 H 0.08 0.35 7.98 -51.92 -0.41 -0.06 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.34 6.76 -51.93 -0.35 -0.01 16 31 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 34 H 0.07 1.26 5.76 -51.93 -0.30 0.96 16 35 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.04 1.33 7.50 -51.93 -0.39 0.94 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.14 0.57 6.60 -52.48 -0.35 0.22 16 39 H 0.15 0.05 8.06 -52.49 -0.42 -0.37 16 40 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -36.65 363.67 -7.07 -43.72 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.72 Total: -4.85 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -4.13 Total: 3.29 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 1.24 Total: -51.16 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.65 -7.07 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356221663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.485 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds