Wall clock time and date at job start Tue Mar 31 2020 13:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35355 * 126.44027 * 2 1 4 4 C 1.41529 * 105.56155 * 179.97438 * 3 2 1 5 5 C 1.47670 * 126.44690 * 180.02562 * 4 3 2 6 6 O 1.21572 * 119.99856 * 1.08518 * 5 4 3 7 7 N 1.34772 * 120.00143 * 181.08953 * 5 4 3 8 8 C 1.46508 * 119.99955 * 354.82527 * 7 5 4 9 9 C 1.46499 * 120.00112 * 174.82809 * 7 5 4 10 10 C 1.50700 * 109.46949 * 89.99837 * 9 7 5 11 11 H 1.07995 * 120.00337 * 0.02562 * 10 9 7 12 12 C 1.37881 * 119.99763 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99841 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47070 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46941 * 120.00162 * 14 12 10 17 17 H 1.48495 * 109.47000 * 239.99857 * 14 12 10 18 18 N 1.31856 * 107.11345 * 359.97438 * 4 3 2 19 19 N 1.28485 * 110.11935 * 359.74374 * 18 4 3 20 20 C 1.40130 * 124.95740 * 180.28430 * 19 18 4 21 21 C 1.38992 * 119.99461 * 220.23952 * 20 19 18 22 22 C 1.38214 * 120.23944 * 179.97438 * 21 20 19 23 23 C 1.38012 * 120.22390 * 359.97438 * 22 21 20 24 24 C 1.39640 * 119.98954 * 0.02562 * 23 22 21 25 25 C 1.43199 * 120.12094 * 180.02562 * 24 23 22 26 26 N 7.04712 * 104.43057 * 160.92889 * 2 1 3 27 27 C 1.38563 * 119.99502 * 39.96677 * 20 19 18 28 28 H 1.09008 * 109.47099 * 85.49113 * 1 2 3 29 29 H 1.09002 * 109.47230 * 325.49573 * 1 2 3 30 30 H 1.08997 * 109.47543 * 205.49611 * 1 2 3 31 31 H 1.08003 * 127.21746 * 359.96670 * 3 2 1 32 32 H 1.09004 * 109.47085 * 84.13883 * 8 7 5 33 33 H 1.09002 * 109.47007 * 204.13880 * 8 7 5 34 34 H 1.09001 * 109.47257 * 324.14202 * 8 7 5 35 35 H 1.08994 * 109.47066 * 209.99755 * 9 7 5 36 36 H 1.08994 * 109.47001 * 330.00064 * 9 7 5 37 37 H 0.96997 * 120.00472 * 179.97438 * 13 12 10 38 38 H 1.08005 * 119.87850 * 359.95548 * 21 20 19 39 39 H 1.07997 * 119.88655 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00262 * 180.02562 * 23 22 21 41 41 H 1.07995 * 120.11579 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3109 1.0889 0.0000 4 6 3.6333 0.5845 0.0006 5 6 4.8763 1.3817 0.0014 6 8 4.8196 2.5959 0.0215 7 7 6.0735 0.7633 -0.0203 8 6 6.1453 -0.6973 0.0699 9 6 7.3032 1.5514 -0.1339 10 6 7.7974 1.9126 1.2432 11 1 7.2505 1.5873 2.1157 12 6 8.9478 2.6585 1.3891 13 7 9.6135 3.0551 0.3266 14 14 9.5600 3.1068 3.0961 15 1 8.6386 2.5445 4.1159 16 1 10.9208 2.5470 3.2967 17 1 9.6077 4.5847 3.2325 18 7 3.5467 -0.7312 0.0015 19 7 2.3138 -1.0930 0.0069 20 6 1.8668 -2.4211 0.0150 21 6 0.7721 -2.7905 -0.7576 22 6 0.3272 -4.0990 -0.7538 23 6 0.9674 -5.0482 0.0169 24 6 2.0682 -4.6875 0.7967 25 6 2.7349 -5.6702 1.5969 26 7 3.2631 -6.4502 2.2299 27 6 2.5197 -3.3670 0.7889 28 1 -0.3634 0.0808 -1.0246 29 1 -0.3634 0.8469 0.5821 30 1 -0.3634 -0.9275 0.4423 31 1 2.0070 2.1253 -0.0005 32 1 6.0062 -1.1297 -0.9210 33 1 7.1200 -0.9897 0.4604 34 1 5.3631 -1.0590 0.7372 35 1 8.0635 0.9660 -0.6508 36 1 7.1003 2.4620 -0.6975 37 1 10.4226 3.5802 0.4291 38 1 0.2670 -2.0522 -1.3628 39 1 -0.5243 -4.3797 -1.3559 40 1 0.6170 -6.0698 0.0168 41 1 3.3735 -3.0829 1.3861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356221663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:51 Heat of formation + Delta-G solvation = 96.374550 kcal Electronic energy + Delta-G solvation = -25983.363822 eV Core-core repulsion = 22251.198352 eV Total energy + Delta-G solvation = -3732.165471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99372 -40.68485 -40.16089 -37.68254 -36.70619 -35.01816 -34.53359 -33.85446 -32.34987 -30.86149 -29.72334 -27.99026 -27.54482 -26.08194 -25.20954 -24.23629 -22.70875 -22.19894 -20.10673 -19.70913 -18.72790 -17.84596 -17.60430 -17.41465 -17.32552 -17.06319 -16.45640 -16.11461 -15.80646 -15.19413 -15.05249 -14.79290 -14.66741 -14.34900 -14.33857 -14.04617 -13.96299 -13.84788 -13.75783 -13.61381 -13.46247 -13.30361 -13.08442 -12.91714 -12.62748 -12.55100 -12.46316 -12.26741 -11.75267 -11.63113 -11.06987 -10.91288 -10.66831 -10.13787 -9.95502 -9.64479 -9.41859 -8.24856 -6.39757 -0.45125 -0.15545 0.64577 1.11346 1.25487 1.34727 1.37082 1.49562 1.58443 1.81762 2.23357 2.39157 2.43497 2.68721 2.73005 3.04198 3.32032 3.65368 3.72287 3.83033 3.92715 4.03418 4.23632 4.36841 4.39657 4.49640 4.58292 4.65674 4.72910 4.82130 4.89488 4.94882 4.98638 5.04697 5.11055 5.15958 5.17981 5.21966 5.35568 5.52709 5.57907 5.77937 5.99962 6.01801 6.34057 6.57726 6.68400 6.81269 7.20904 7.35992 8.82805 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.003113 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.345430 B = 8993.788704 C =10341.083176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.038 3.962 3 C -0.197 4.197 4 C -0.019 4.019 5 C 0.578 3.422 6 O -0.581 6.581 7 N -0.596 5.596 8 C 0.094 3.906 9 C 0.260 3.740 10 C -0.545 4.545 11 H 0.049 0.951 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.970 3.030 15 H -0.271 1.271 16 H -0.267 1.267 17 H -0.277 1.277 18 N -0.266 5.266 19 N -0.241 5.241 20 C 0.106 3.894 21 C -0.074 4.074 22 C -0.080 4.080 23 C -0.045 4.045 24 C -0.020 4.020 25 C 0.276 3.724 26 N -0.458 5.458 27 C -0.067 4.067 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.166 0.834 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.004 0.996 37 H 0.269 0.731 38 H 0.166 0.834 39 H 0.193 0.807 40 H 0.171 0.829 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.235 -18.068 -4.512 33.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.225 4.225 4 C -0.179 4.179 5 C 0.365 3.635 6 O -0.460 6.460 7 N -0.326 5.326 8 C -0.049 4.049 9 C 0.140 3.860 10 C -0.583 4.583 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.566 5.566 14 Si 0.794 3.206 15 H -0.196 1.196 16 H -0.192 1.192 17 H -0.202 1.202 18 N -0.100 5.100 19 N -0.024 5.024 20 C 0.017 3.983 21 C -0.095 4.095 22 C -0.098 4.098 23 C -0.065 4.065 24 C -0.024 4.024 25 C -0.039 4.039 26 N -0.134 5.134 27 C -0.089 4.089 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.184 0.816 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.183 0.817 39 H 0.210 0.790 40 H 0.189 0.811 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.600 -19.600 -3.575 33.234 hybrid contribution 0.963 1.838 0.691 2.186 sum -25.637 -17.762 -2.885 31.322 Atomic orbital electron populations 1.20753 0.82289 1.05657 1.05634 1.22206 0.97323 0.84224 1.04641 1.21730 0.89788 1.00910 1.10061 1.21850 0.95036 0.90245 1.10749 1.17508 0.82685 0.86321 0.77025 1.90710 1.87174 1.15029 1.53120 1.48059 1.06224 1.08829 1.69486 1.21919 1.02827 0.77955 1.02194 1.18874 0.80523 0.90269 0.96365 1.21674 1.09208 1.34590 0.92867 0.93314 1.25851 0.96455 0.95085 1.01545 1.70044 1.18084 1.37648 1.30783 0.85337 0.78324 0.78124 0.78827 1.19566 1.19172 1.20213 1.73845 1.01904 1.13881 1.20360 1.43094 1.02839 1.05679 1.50825 1.17593 0.99120 0.79641 1.01989 1.21742 0.93472 0.99160 0.95095 1.21467 1.00631 0.89733 0.97987 1.21766 0.90772 1.02465 0.91506 1.15734 0.98434 0.88226 0.99983 1.25791 0.92689 0.92739 0.92679 1.81279 1.09656 1.11541 1.10890 1.20925 0.99272 0.91555 0.97153 0.87196 0.88455 0.88656 0.81621 0.91984 0.91487 0.89572 0.95349 0.97745 0.92201 0.81659 0.79026 0.81122 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 8.75 71.23 0.62 -0.04 16 2 C 0.04 0.77 6.74 41.27 0.28 1.05 16 3 C -0.20 -5.88 10.72 22.42 0.24 -5.64 16 4 C -0.02 -0.73 6.82 42.44 0.29 -0.44 16 5 C 0.58 28.34 7.66 86.74 0.66 29.00 16 6 O -0.58 -33.14 16.55 -3.94 -0.07 -33.21 16 7 N -0.60 -29.39 2.86 -854.77 -2.44 -31.83 16 8 C 0.09 3.64 9.38 127.77 1.20 4.84 16 9 C 0.26 15.16 5.10 85.63 0.44 15.59 16 10 C -0.54 -33.49 9.39 25.60 0.24 -33.25 16 11 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 12 C 0.01 0.59 5.46 84.66 0.46 1.05 16 13 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 14 Si 0.97 46.90 29.54 68.60 2.03 48.92 16 15 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 18 N -0.27 -8.41 8.31 -48.16 -0.40 -8.81 16 19 N -0.24 -5.49 3.45 -175.69 -0.61 -6.09 16 20 C 0.11 1.57 6.05 38.07 0.23 1.80 16 21 C -0.07 -0.40 8.17 22.44 0.18 -0.21 16 22 C -0.08 0.01 10.02 22.21 0.22 0.24 16 23 C -0.04 -0.14 9.75 22.55 0.22 0.08 16 24 C -0.02 -0.22 5.73 -21.38 -0.12 -0.35 16 25 C 0.28 4.81 15.32 88.34 1.35 6.16 16 26 N -0.46 -10.85 18.53 18.99 0.35 -10.49 16 27 C -0.07 -1.06 9.43 22.67 0.21 -0.84 16 28 H 0.11 0.32 7.98 -2.38 -0.02 0.30 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.35 6.76 -2.39 -0.02 0.34 16 31 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 34 H 0.09 3.12 5.76 -2.39 -0.01 3.11 16 35 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 36 H 0.00 0.29 7.50 -2.39 -0.02 0.27 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.17 0.20 6.60 -2.91 -0.02 0.18 16 39 H 0.19 -1.56 8.06 -2.91 -0.02 -1.58 16 40 H 0.17 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -88.62 363.67 6.96 -81.67 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.07 Total: -1.82 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.74 Total: 19.04 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -2.81 Total: -114.60 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.07 Total: -33.21 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -88.62 6.96 -81.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356221663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.043 kcal (2) G-P(sol) polarization free energy of solvation -88.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds