Wall clock time and date at job start Tue Mar 31 2020 14:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 N 1.46896 * 109.47495 * 240.00012 * 2 1 3 5 5 C 1.46901 * 111.00150 * 281.23823 * 4 2 1 6 6 C 1.50703 * 109.47175 * 283.36435 * 5 4 2 7 7 O 1.21281 * 119.99738 * 3.38684 * 6 5 4 8 8 N 1.34773 * 120.00269 * 183.39597 * 6 5 4 9 9 C 1.46501 * 120.00299 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47210 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00263 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99760 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00261 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47119 * 89.99831 * 14 12 10 16 16 H 1.48498 * 109.47198 * 209.99996 * 14 12 10 17 17 H 1.48506 * 109.47088 * 329.99787 * 14 12 10 18 18 C 1.46897 * 110.99966 * 45.18956 * 4 2 1 19 19 C 1.50703 * 109.47197 * 71.39862 * 18 4 2 20 20 C 1.38270 * 119.98855 * 248.38636 * 19 18 4 21 21 C 1.38220 * 120.02209 * 179.76394 * 20 19 18 22 22 C 1.38238 * 120.01434 * 0.51070 * 21 20 19 23 23 C 1.38338 * 119.98438 * 359.74331 * 22 21 20 24 24 Cl 1.73602 * 120.01109 * 180.02562 * 23 22 21 25 25 C 1.38189 * 119.99488 * 68.65940 * 19 18 4 26 26 H 1.08996 * 109.47028 * 51.27706 * 1 2 3 27 27 H 1.08997 * 109.46926 * 171.27242 * 1 2 3 28 28 H 1.08994 * 109.47289 * 291.27226 * 1 2 3 29 29 H 1.09001 * 109.47041 * 119.99864 * 2 1 3 30 30 H 1.09004 * 109.46936 * 70.32073 * 3 2 1 31 31 H 1.08994 * 109.47420 * 190.32070 * 3 2 1 32 32 H 1.09006 * 109.47118 * 310.32120 * 3 2 1 33 33 H 1.09004 * 109.47064 * 43.35666 * 5 4 2 34 34 H 1.09002 * 109.47433 * 163.36124 * 5 4 2 35 35 H 0.97006 * 119.99596 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.46679 * 299.99798 * 9 8 6 37 37 H 1.08994 * 109.47153 * 59.99628 * 9 8 6 38 38 H 0.97002 * 119.99619 * 179.97438 * 13 12 10 39 39 H 1.09003 * 109.47095 * 191.39509 * 18 4 2 40 40 H 1.09003 * 109.47277 * 311.39671 * 18 4 2 41 41 H 1.07996 * 119.98683 * 0.02562 * 20 19 18 42 42 H 1.07997 * 119.99371 * 180.25518 * 21 20 19 43 43 H 1.08000 * 120.01099 * 179.77070 * 22 21 20 44 44 H 1.08000 * 120.00658 * 359.95810 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.9432 -2.1501 -1.0338 6 6 3.0715 -2.6152 -0.1496 7 8 3.8249 -1.8056 0.3483 8 7 3.2435 -3.9306 0.0877 9 6 4.3406 -4.3827 0.9468 10 6 4.3114 -5.8859 1.0497 11 1 3.5518 -6.4484 0.5270 12 6 5.2550 -6.5433 1.8102 13 7 5.2298 -7.8552 1.8995 14 14 6.5693 -5.5707 2.7136 15 1 6.0804 -5.2206 4.0714 16 1 7.8018 -6.3912 2.8274 17 1 6.8705 -4.3270 1.9600 18 6 1.2840 -0.2591 -2.3947 19 6 1.6841 1.1504 -2.7474 20 6 0.7746 2.1824 -2.6077 21 6 1.1423 3.4761 -2.9263 22 6 2.4164 3.7374 -3.3948 23 6 3.3250 2.7044 -3.5398 24 17 4.9254 3.0318 -4.1275 25 6 2.9580 1.4102 -3.2156 26 1 -0.3633 0.6428 -0.8017 27 1 -0.3633 -1.0157 -0.1559 28 1 -0.3633 0.3728 0.9576 29 1 1.8933 -0.5138 0.8900 30 1 1.8348 1.9004 0.9677 31 1 3.1143 1.4480 -0.1841 32 1 1.5342 2.0067 -0.7836 33 1 0.9901 -2.4142 -0.5756 34 1 2.0235 -2.6312 -2.0086 35 1 2.6407 -4.5781 -0.3104 36 1 5.2916 -4.0659 0.5185 37 1 4.2269 -3.9487 1.9401 38 1 5.8940 -8.3177 2.4343 39 1 1.5196 -0.9227 -3.2268 40 1 0.2130 -0.2936 -2.1946 41 1 -0.2221 1.9782 -2.2455 42 1 0.4329 4.2825 -2.8131 43 1 2.7025 4.7477 -3.6473 44 1 3.6671 0.6034 -3.3282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047959280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:22 Heat of formation + Delta-G solvation = -6.110437 kcal Electronic energy + Delta-G solvation = -25220.316193 eV Core-core repulsion = 21584.814133 eV Total energy + Delta-G solvation = -3635.502059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40485 -39.05536 -37.54560 -36.51416 -34.20926 -32.48063 -32.33466 -31.80164 -30.90432 -28.59927 -27.31867 -26.87634 -24.63731 -22.88714 -22.11425 -21.82521 -20.06240 -19.50146 -17.43161 -17.00990 -16.52156 -15.97565 -15.94856 -15.63163 -15.32383 -14.80899 -14.39499 -14.21034 -13.99853 -13.72550 -13.66292 -13.42163 -13.18382 -12.74611 -12.64623 -12.51880 -12.29311 -12.12844 -11.98276 -11.69775 -11.62982 -11.38935 -11.29274 -11.05376 -11.00421 -10.92906 -10.75776 -10.57280 -9.95911 -9.48865 -9.20857 -9.07090 -8.76745 -8.72819 -8.27143 -8.08794 -6.21146 -4.23170 0.89390 1.05530 1.96756 3.25009 3.26627 3.31543 3.34504 3.43526 3.70883 4.25383 4.34450 4.43763 4.55748 4.76299 4.88078 4.91227 4.98722 5.10379 5.14368 5.18557 5.22157 5.28540 5.31836 5.40087 5.51529 5.53886 5.64261 5.67917 5.76680 5.84410 5.92110 6.02696 6.07264 6.21986 6.25897 6.44081 6.54266 6.80368 6.98602 7.06449 7.09985 7.27259 7.41861 8.16568 8.54900 8.76765 9.00865 9.39614 10.90840 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.002817 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.105297 B = 9935.556535 C =10873.792443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.082 3.918 3 C -0.153 4.153 4 N -0.508 5.508 5 C 0.033 3.967 6 C 0.500 3.500 7 O -0.537 6.537 8 N -0.710 5.710 9 C 0.223 3.777 10 C -0.543 4.543 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.260 1.260 18 C 0.083 3.917 19 C -0.052 4.052 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.034 4.034 24 Cl -0.074 7.074 25 C -0.082 4.082 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 22.143 -11.760 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.026 4.026 3 C -0.210 4.210 4 N -0.231 5.231 5 C -0.099 4.099 6 C 0.284 3.716 7 O -0.414 6.414 8 N -0.360 5.360 9 C 0.101 3.899 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.184 1.184 18 C -0.044 4.044 19 C -0.053 4.053 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.061 4.061 24 Cl -0.045 7.045 25 C -0.101 4.101 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.228 0.772 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.943 22.685 -11.412 27.651 hybrid contribution -0.230 -0.263 0.476 0.591 sum -11.172 22.422 -10.936 27.334 Atomic orbital electron populations 1.22545 0.98048 1.01654 1.02380 1.21697 0.91644 0.96085 0.93203 1.22203 1.02640 0.94746 1.01409 1.61819 1.55072 1.03773 1.02434 1.22040 0.97549 0.89212 1.01059 1.20355 0.86075 0.83043 0.82146 1.90656 1.46047 1.53481 1.51257 1.46169 1.33256 1.06064 1.50498 1.19443 0.85538 0.95444 0.89495 1.21102 1.15970 0.88999 1.31994 0.90303 1.24799 0.97288 0.94826 0.95734 1.69884 1.35819 1.07244 1.40124 0.86819 0.81421 0.80688 0.80787 1.19896 1.20916 1.18444 1.21206 0.96898 0.92699 0.93608 1.19652 0.93214 0.95306 0.97119 1.21082 0.99626 0.92550 0.99647 1.21012 0.95770 0.96856 0.99479 1.21015 0.93234 0.98495 1.00630 1.20949 0.87065 0.95069 1.02992 1.98378 1.23435 1.95711 1.86947 1.20937 0.96433 0.95177 0.97565 0.92193 0.92683 0.91973 0.89364 0.93240 0.91642 0.91400 0.91712 0.88338 0.77234 0.95771 0.96358 0.92284 0.89547 0.92540 0.85623 0.85286 0.85282 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 7.96 37.15 0.30 -1.46 16 2 C 0.08 1.01 2.47 -67.72 -0.17 0.84 16 3 C -0.15 -1.84 8.42 37.16 0.31 -1.53 16 4 N -0.51 -6.31 3.99 -229.52 -0.92 -7.22 16 5 C 0.03 0.42 5.38 -4.97 -0.03 0.39 16 6 C 0.50 9.21 7.48 -10.99 -0.08 9.13 16 7 O -0.54 -12.03 15.28 5.56 0.08 -11.95 16 8 N -0.71 -14.06 5.55 -61.47 -0.34 -14.40 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 10 C -0.54 -14.85 9.83 -34.44 -0.34 -15.19 16 11 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 14 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 C 0.08 0.78 4.76 -4.98 -0.02 0.76 16 19 C -0.05 -0.50 3.34 -104.63 -0.35 -0.85 16 20 C -0.11 -0.88 6.66 -39.58 -0.26 -1.14 16 21 C -0.11 -0.84 10.01 -39.59 -0.40 -1.24 16 22 C -0.11 -0.99 9.83 -39.54 -0.39 -1.38 16 23 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 16 25 C -0.08 -0.89 9.49 -39.55 -0.38 -1.26 16 26 H 0.06 0.47 4.71 -51.93 -0.24 0.22 16 27 H 0.05 0.50 6.80 -51.93 -0.35 0.15 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.36 6.74 -51.93 -0.35 1.01 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.70 3.52 -51.93 -0.18 0.52 16 33 H 0.06 0.72 6.66 -51.93 -0.35 0.37 16 34 H 0.10 1.05 7.64 -51.93 -0.40 0.65 16 35 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.09 0.74 7.69 -51.93 -0.40 0.34 16 40 H 0.06 0.45 5.44 -51.93 -0.28 0.16 16 41 H 0.13 0.78 6.63 -52.49 -0.35 0.44 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.25 361.53 -9.42 -41.67 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.12 Total: 3.58 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.17 Total: -5.98 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.48 Total: -47.40 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.25 -9.42 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047959280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.560 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds