Wall clock time and date at job start Tue Mar 31 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 C 1.53001 * 109.47064 * 240.00039 * 2 1 3 5 5 C 1.50696 * 109.47439 * 119.99899 * 2 1 3 6 6 N 1.29202 * 125.34823 * 59.97756 * 5 2 1 7 7 N 1.40273 * 107.88970 * 180.02562 * 6 5 2 8 8 C 1.46503 * 126.63481 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46948 * 269.99782 * 8 7 6 10 10 C 1.46900 * 110.99886 * 190.00084 * 9 8 7 11 11 C 1.50699 * 109.46835 * 168.94945 * 10 9 8 12 12 H 1.08001 * 120.00162 * 354.95156 * 11 10 9 13 13 C 1.37882 * 119.99915 * 174.95716 * 11 10 9 14 14 N 1.31510 * 119.99814 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99742 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47465 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47039 * 119.99999 * 15 13 11 18 18 H 1.48508 * 109.46839 * 239.99584 * 15 13 11 19 19 C 1.46906 * 110.99557 * 66.04858 * 9 8 7 20 20 C 1.52992 * 109.47191 * 62.06851 * 19 9 8 21 21 C 1.47206 * 109.47150 * 179.55578 * 20 19 9 22 22 N 6.36528 * 52.21021 * 162.08102 * 2 1 3 23 23 C 1.35037 * 106.73063 * 0.02562 * 7 6 5 24 24 S 1.71196 * 126.38116 * 180.02562 * 23 7 6 25 25 O 1.34412 * 107.24087 * 0.02562 * 23 7 6 26 26 H 1.09002 * 109.46747 * 299.99854 * 1 2 3 27 27 H 1.08997 * 109.46807 * 59.99890 * 1 2 3 28 28 H 1.08993 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47283 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46776 * 299.99856 * 3 2 1 31 31 H 1.08998 * 109.47374 * 59.99949 * 3 2 1 32 32 H 1.09003 * 109.47008 * 299.99683 * 4 2 1 33 33 H 1.08996 * 109.47420 * 59.99818 * 4 2 1 34 34 H 1.09005 * 109.46962 * 180.02562 * 4 2 1 35 35 H 1.08995 * 109.47618 * 29.99757 * 8 7 6 36 36 H 1.08999 * 109.47134 * 150.00504 * 8 7 6 37 37 H 1.09002 * 109.47287 * 288.93993 * 10 9 8 38 38 H 1.08999 * 109.47311 * 48.94689 * 10 9 8 39 39 H 0.97001 * 119.99827 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.46770 * 182.07115 * 19 9 8 41 41 H 1.08996 * 109.47015 * 302.06208 * 19 9 8 42 42 H 1.08998 * 109.47206 * 299.55387 * 20 19 9 43 43 H 1.08997 * 109.47363 * 59.55610 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 7 1.7845 -1.9408 1.5368 7 7 2.4286 -2.2207 2.7510 8 6 2.4184 -3.4958 3.4724 9 7 1.2842 -3.5211 4.4058 10 6 1.3739 -4.6738 5.3120 11 6 0.3611 -4.5234 6.4177 12 1 -0.2279 -3.6212 6.4915 13 6 0.1864 -5.5377 7.3352 14 7 0.9034 -6.6365 7.2451 15 14 -1.0686 -5.3510 8.7062 16 1 -1.7389 -4.0313 8.5874 17 1 -2.0810 -6.4323 8.6012 18 1 -0.3829 -5.4409 10.0205 19 6 0.0062 -3.5191 3.6814 20 6 -0.0939 -4.7797 2.8203 21 6 -1.3792 -4.7829 2.1026 22 7 -2.3704 -4.7862 1.5477 23 6 3.0591 -1.0873 3.1269 24 16 4.0012 -0.8701 4.5398 25 8 2.8093 -0.1613 2.1852 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 2.3213 -4.3154 2.7605 36 1 3.3492 -3.6060 4.0287 37 1 1.1717 -5.5895 4.7563 38 1 2.3750 -4.7222 5.7404 39 1 0.7802 -7.3502 7.8904 40 1 -0.8165 -3.5010 4.3962 41 1 -0.0480 -2.6375 3.0427 42 1 0.7243 -4.7938 2.1002 43 1 -0.0318 -5.6613 3.4581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048619072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:30 Heat of formation + Delta-G solvation = 85.690031 kcal Electronic energy + Delta-G solvation = -25838.344512 eV Core-core repulsion = 22241.159677 eV Total energy + Delta-G solvation = -3597.184835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.76410 -38.49694 -37.62078 -36.44590 -35.66783 -32.86432 -32.34879 -30.45346 -28.17510 -27.84388 -27.74176 -26.02742 -24.55283 -24.20619 -23.11397 -20.76006 -20.11690 -18.45506 -17.75665 -17.58693 -17.05170 -16.39408 -16.04250 -15.59375 -15.40460 -14.68889 -14.55419 -14.49594 -14.39452 -13.91522 -13.68812 -12.94025 -12.80178 -12.63889 -12.56278 -12.42579 -12.30899 -12.20242 -12.18891 -12.14654 -11.85321 -11.73159 -11.54423 -11.46503 -11.42652 -11.25847 -10.94408 -10.81268 -10.76992 -10.40788 -10.08554 -9.48233 -8.59292 -7.96452 -7.74258 -7.61498 -6.18131 -4.19962 0.73951 1.09393 1.17406 1.88310 2.60833 2.96379 3.00244 3.25532 3.34425 3.38665 3.56944 4.10041 4.19203 4.25745 4.31294 4.35030 4.51601 4.59752 4.97991 5.06126 5.10930 5.13586 5.19101 5.25666 5.26618 5.32991 5.33547 5.35449 5.41755 5.49492 5.63847 5.65107 5.73786 5.76144 5.86607 6.01067 6.36428 6.81742 6.93272 7.02218 7.50019 7.62186 7.78668 7.87700 8.20030 8.86553 9.45630 10.92112 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.004088 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.343368 B = 6847.599269 C = 8209.957701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 C -0.149 4.149 4 C -0.143 4.143 5 C 0.242 3.758 6 N -0.268 5.268 7 N -0.372 5.372 8 C 0.295 3.705 9 N -0.532 5.532 10 C 0.194 3.806 11 C -0.510 4.510 12 H 0.066 0.934 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.282 1.282 19 C 0.070 3.930 20 C -0.072 4.072 21 C 0.226 3.774 22 N -0.456 5.456 23 C 0.420 3.580 24 S -0.457 6.457 25 O -0.216 6.216 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.013 0.987 38 H 0.041 0.959 39 H 0.263 0.737 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 10.755 -18.167 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 C -0.206 4.206 4 C -0.201 4.201 5 C 0.013 3.987 6 N -0.095 5.095 7 N -0.174 5.174 8 C 0.086 3.914 9 N -0.256 5.256 10 C 0.070 3.930 11 C -0.549 4.549 12 H 0.084 0.916 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.060 4.060 20 C -0.113 4.113 21 C -0.092 4.092 22 N -0.134 5.134 23 C 0.123 3.877 24 S -0.327 6.327 25 O -0.106 6.106 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.148 0.852 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.750 10.303 -17.901 20.728 hybrid contribution -0.456 -0.346 0.182 0.601 sum 1.294 9.956 -17.719 20.366 Atomic orbital electron populations 1.21989 0.90707 1.03962 1.03577 1.19471 0.97059 0.95282 0.85770 1.21955 1.02317 0.92669 1.03693 1.21976 1.01875 1.01254 0.94958 1.27182 0.90234 0.88733 0.92505 1.77233 1.17875 1.14261 1.00101 1.50804 1.38273 1.12900 1.15433 1.22612 0.99779 0.76961 0.92018 1.62317 0.98979 1.47978 1.16367 1.19905 0.99295 0.83860 0.89930 1.21043 1.20657 1.02501 1.10686 0.91572 1.24917 0.96272 0.95041 0.97860 1.69927 1.40212 1.06458 1.36729 0.86446 0.81022 0.78154 0.81903 1.19609 1.21095 1.20837 1.22088 0.94719 0.93456 0.95708 1.20160 0.87526 1.05094 0.98568 1.29080 0.94665 0.92546 0.92895 1.81144 1.11899 1.09550 1.10757 1.27403 0.89248 0.80498 0.90511 1.93602 1.42442 1.89070 1.07611 1.85449 1.57063 1.39513 1.28550 0.91570 0.90131 0.90985 0.91301 0.90375 0.91223 0.90991 0.90146 0.91702 0.90262 0.85198 0.96984 0.94133 0.92713 0.88250 0.92128 0.88437 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.45 37.16 0.31 -0.66 16 2 C 0.03 0.19 0.99 -155.66 -0.15 0.04 16 3 C -0.15 -0.88 8.01 37.16 0.30 -0.58 16 4 C -0.14 -0.81 8.45 37.16 0.31 -0.49 16 5 C 0.24 2.67 6.50 -13.39 -0.09 2.58 16 6 N -0.27 -3.33 11.55 32.46 0.37 -2.96 16 7 N -0.37 -5.40 3.35 -65.07 -0.22 -5.62 16 8 C 0.29 4.39 5.76 -63.31 -0.36 4.03 16 9 N -0.53 -9.53 4.83 -239.98 -1.16 -10.69 16 10 C 0.19 4.17 4.53 -4.98 -0.02 4.15 16 11 C -0.51 -12.77 8.40 -34.44 -0.29 -13.05 16 12 H 0.07 1.69 7.38 -52.49 -0.39 1.31 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.07 1.14 5.01 -3.83 -0.02 1.12 16 20 C -0.07 -1.00 5.05 -29.52 -0.15 -1.15 16 21 C 0.23 3.47 15.43 -20.76 -0.32 3.15 16 22 N -0.46 -7.87 18.54 42.15 0.78 -7.09 16 23 C 0.42 6.68 8.39 54.17 0.45 7.14 16 24 S -0.46 -8.67 30.48 -107.50 -3.28 -11.95 16 25 O -0.22 -2.91 10.10 4.10 0.04 -2.87 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.99 6.07 -51.93 -0.32 0.68 16 36 H 0.13 2.01 7.50 -51.93 -0.39 1.62 16 37 H 0.01 0.27 6.00 -51.93 -0.31 -0.05 16 38 H 0.04 0.95 7.91 -51.93 -0.41 0.54 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.10 1.81 6.99 -51.93 -0.36 1.45 16 41 H 0.06 0.94 6.75 -51.93 -0.35 0.59 16 42 H 0.10 1.15 6.34 -51.93 -0.33 0.82 16 43 H 0.13 1.91 6.27 -51.93 -0.33 1.58 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -30.38 376.24 -8.32 -38.69 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.12 Total: -3.11 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.12 Total: 7.76 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.51 Total: -49.81 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -3.28 Total: -11.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.38 -8.32 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048619072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.384 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds