Wall clock time and date at job start Tue Mar 31 2020 13:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 C 1.53001 * 109.47064 * 240.00039 * 2 1 3 5 5 C 1.50696 * 109.47439 * 119.99899 * 2 1 3 6 6 N 1.29202 * 125.34823 * 59.97756 * 5 2 1 7 7 N 1.40273 * 107.88970 * 180.02562 * 6 5 2 8 8 C 1.46503 * 126.63481 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46948 * 269.99782 * 8 7 6 10 10 C 1.46900 * 110.99886 * 190.00084 * 9 8 7 11 11 C 1.50699 * 109.46835 * 168.94945 * 10 9 8 12 12 H 1.08001 * 120.00162 * 354.95156 * 11 10 9 13 13 C 1.37882 * 119.99915 * 174.95716 * 11 10 9 14 14 N 1.31510 * 119.99814 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99742 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47465 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47039 * 119.99999 * 15 13 11 18 18 H 1.48508 * 109.46839 * 239.99584 * 15 13 11 19 19 C 1.46906 * 110.99557 * 66.04858 * 9 8 7 20 20 C 1.52992 * 109.47191 * 62.06851 * 19 9 8 21 21 C 1.47206 * 109.47150 * 179.55578 * 20 19 9 22 22 N 6.36528 * 52.21021 * 162.08102 * 2 1 3 23 23 C 1.35037 * 106.73063 * 0.02562 * 7 6 5 24 24 S 1.71196 * 126.38116 * 180.02562 * 23 7 6 25 25 O 1.34412 * 107.24087 * 0.02562 * 23 7 6 26 26 H 1.09002 * 109.46747 * 299.99854 * 1 2 3 27 27 H 1.08997 * 109.46807 * 59.99890 * 1 2 3 28 28 H 1.08993 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47283 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46776 * 299.99856 * 3 2 1 31 31 H 1.08998 * 109.47374 * 59.99949 * 3 2 1 32 32 H 1.09003 * 109.47008 * 299.99683 * 4 2 1 33 33 H 1.08996 * 109.47420 * 59.99818 * 4 2 1 34 34 H 1.09005 * 109.46962 * 180.02562 * 4 2 1 35 35 H 1.08995 * 109.47618 * 29.99757 * 8 7 6 36 36 H 1.08999 * 109.47134 * 150.00504 * 8 7 6 37 37 H 1.09002 * 109.47287 * 288.93993 * 10 9 8 38 38 H 1.08999 * 109.47311 * 48.94689 * 10 9 8 39 39 H 0.97001 * 119.99827 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.46770 * 182.07115 * 19 9 8 41 41 H 1.08996 * 109.47015 * 302.06208 * 19 9 8 42 42 H 1.08998 * 109.47206 * 299.55387 * 20 19 9 43 43 H 1.08997 * 109.47363 * 59.55610 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 7 1.7845 -1.9408 1.5368 7 7 2.4286 -2.2207 2.7510 8 6 2.4184 -3.4958 3.4724 9 7 1.2842 -3.5211 4.4058 10 6 1.3739 -4.6738 5.3120 11 6 0.3611 -4.5234 6.4177 12 1 -0.2279 -3.6212 6.4915 13 6 0.1864 -5.5377 7.3352 14 7 0.9034 -6.6365 7.2451 15 14 -1.0686 -5.3510 8.7062 16 1 -1.7389 -4.0313 8.5874 17 1 -2.0810 -6.4323 8.6012 18 1 -0.3829 -5.4409 10.0205 19 6 0.0062 -3.5191 3.6814 20 6 -0.0939 -4.7797 2.8203 21 6 -1.3792 -4.7829 2.1026 22 7 -2.3704 -4.7862 1.5477 23 6 3.0591 -1.0873 3.1269 24 16 4.0012 -0.8701 4.5398 25 8 2.8093 -0.1613 2.1852 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 2.3213 -4.3154 2.7605 36 1 3.3492 -3.6060 4.0287 37 1 1.1717 -5.5895 4.7563 38 1 2.3750 -4.7222 5.7404 39 1 0.7802 -7.3502 7.8904 40 1 -0.8165 -3.5010 4.3962 41 1 -0.0480 -2.6375 3.0427 42 1 0.7243 -4.7938 2.1002 43 1 -0.0318 -5.6613 3.4581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048619072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:29 Heat of formation + Delta-G solvation = 65.658015 kcal Electronic energy + Delta-G solvation = -25839.213165 eV Core-core repulsion = 22241.159677 eV Total energy + Delta-G solvation = -3598.053488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.93333 -39.84521 -38.29865 -37.70016 -36.98990 -34.70631 -33.51218 -31.81571 -29.64118 -28.40778 -28.31864 -27.45444 -25.85350 -25.29589 -24.60659 -22.11735 -21.08336 -19.68403 -19.06166 -18.78100 -18.35119 -18.03520 -17.14173 -16.82700 -16.65132 -16.21416 -15.83749 -15.40884 -15.11270 -15.05971 -14.91794 -14.29907 -13.87523 -13.73954 -13.65549 -13.55152 -13.43868 -13.20238 -13.14612 -13.03216 -12.95096 -12.79050 -12.69578 -12.67992 -12.62874 -12.49437 -12.39014 -12.03898 -12.00176 -11.85367 -11.63691 -11.35546 -10.56450 -9.39824 -9.20730 -9.07754 -8.17118 -6.22656 -0.56729 -0.20956 0.18413 0.74961 1.41309 1.42970 1.46216 1.55175 1.69789 1.74994 2.42172 2.55070 2.82304 3.18242 3.21406 3.25042 3.67644 3.72554 3.74757 3.93993 3.98638 4.08980 4.14269 4.26101 4.44737 4.52008 4.66098 4.67770 4.70725 4.77746 4.87945 4.89083 4.93554 4.99642 5.19570 5.24937 5.26476 5.26974 5.32129 5.65994 5.87439 6.00714 6.09008 6.40372 6.53216 6.89428 7.45539 8.92479 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.004088 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.343368 B = 6847.599269 C = 8209.957701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.027 3.973 3 C -0.148 4.148 4 C -0.140 4.140 5 C 0.255 3.745 6 N -0.273 5.273 7 N -0.363 5.363 8 C 0.296 3.704 9 N -0.547 5.547 10 C 0.210 3.790 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.019 3.981 14 N -0.921 5.921 15 Si 0.948 3.052 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.284 1.284 19 C 0.078 3.922 20 C -0.058 4.058 21 C 0.244 3.756 22 N -0.485 5.485 23 C 0.433 3.567 24 S -0.537 6.537 25 O -0.211 6.211 26 H 0.055 0.945 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.128 0.872 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 11.434 -20.872 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 C -0.206 4.206 4 C -0.198 4.198 5 C 0.027 3.973 6 N -0.099 5.099 7 N -0.163 5.163 8 C 0.088 3.912 9 N -0.271 5.271 10 C 0.085 3.915 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.181 4.181 14 N -0.562 5.562 15 Si 0.774 3.226 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.210 1.210 19 C -0.052 4.052 20 C -0.100 4.100 21 C -0.073 4.073 22 N -0.164 5.164 23 C 0.132 3.868 24 S -0.408 6.408 25 O -0.100 6.100 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.146 0.854 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.941 10.989 -20.646 23.408 hybrid contribution -0.283 -0.470 0.829 0.994 sum 0.658 10.519 -19.817 22.446 Atomic orbital electron populations 1.22026 0.89969 1.03482 1.04633 1.19894 0.97409 0.95908 0.84376 1.22003 1.02192 0.91692 1.04703 1.22017 1.01950 1.00962 0.94870 1.28356 0.88196 0.88342 0.92396 1.77331 1.18452 1.15094 0.98981 1.50796 1.37342 1.12264 1.15906 1.22634 0.98303 0.77796 0.92460 1.62045 1.00598 1.46819 1.17650 1.19510 0.96903 0.85214 0.89873 1.21318 1.20807 1.01739 1.11592 0.92682 1.25527 0.97783 0.95057 0.99726 1.69997 1.41523 1.07050 1.37604 0.85657 0.79294 0.77982 0.79628 1.19644 1.20629 1.20996 1.21938 0.93043 0.94910 0.95327 1.20070 0.87906 1.03423 0.98575 1.29154 0.94396 0.91636 0.92124 1.81167 1.12737 1.10453 1.11994 1.26902 0.88740 0.81102 0.90029 1.93735 1.46012 1.90148 1.10923 1.85455 1.57136 1.38931 1.28505 0.92535 0.87151 0.92187 0.91575 0.87401 0.92264 0.91716 0.87316 0.91670 0.86887 0.85942 0.96516 0.96391 0.92716 0.90620 0.91213 0.85422 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.45 71.98 0.61 -0.88 16 2 C 0.03 0.30 0.99 -52.93 -0.05 0.25 16 3 C -0.15 -1.29 8.01 71.98 0.58 -0.71 16 4 C -0.14 -1.07 8.45 71.98 0.61 -0.46 16 5 C 0.25 5.06 6.50 88.49 0.58 5.63 16 6 N -0.27 -6.16 11.55 -166.07 -1.92 -8.07 16 7 N -0.36 -10.08 3.35 -471.89 -1.58 -11.66 16 8 C 0.30 8.49 5.76 170.80 0.98 9.48 16 9 N -0.55 -19.33 4.83 -913.16 -4.41 -23.74 16 10 C 0.21 9.07 4.53 85.56 0.39 9.46 16 11 C -0.52 -26.04 8.40 25.60 0.21 -25.82 16 12 H 0.05 2.85 7.38 -2.91 -0.02 2.83 16 13 C 0.02 0.96 5.46 84.66 0.46 1.43 16 14 N -0.92 -50.09 13.29 21.45 0.28 -49.81 16 15 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 C 0.08 2.42 5.01 86.30 0.43 2.85 16 20 C -0.06 -1.51 5.05 28.79 0.15 -1.36 16 21 C 0.24 7.06 15.43 89.44 1.38 8.44 16 22 N -0.49 -16.03 18.54 20.01 0.37 -15.66 16 23 C 0.43 13.61 8.39 129.75 1.09 14.70 16 24 S -0.54 -21.04 30.48 -56.49 -1.72 -22.76 16 25 O -0.21 -5.45 10.10 -8.25 -0.08 -5.54 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 34 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.11 2.51 6.07 -2.39 -0.01 2.50 16 36 H 0.12 3.79 7.50 -2.39 -0.02 3.77 16 37 H 0.02 0.73 6.00 -2.39 -0.01 0.71 16 38 H 0.02 0.86 7.91 -2.39 -0.02 0.84 16 39 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 40 H 0.08 2.74 6.99 -2.39 -0.02 2.73 16 41 H 0.07 2.05 6.75 -2.39 -0.02 2.03 16 42 H 0.13 2.56 6.34 -2.39 -0.02 2.55 16 43 H 0.12 3.39 6.27 -2.39 -0.01 3.37 16 Total: -1.00 -66.92 376.24 1.40 -65.52 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.03 Total: 4.22 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.41 Total: 22.99 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -7.26 Total: -108.95 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.08 Total: -5.54 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -21.04 SS G_CDS: -1.72 Total: -22.76 kcal Total: -66.92 1.40 -65.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048619072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.175 kcal (2) G-P(sol) polarization free energy of solvation -66.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds