Wall clock time and date at job start Tue Mar 31 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 C 1.52998 * 109.47321 * 120.00634 * 2 1 3 5 5 N 1.46898 * 109.47174 * 177.54119 * 4 2 1 6 6 C 1.46892 * 111.00151 * 150.05536 * 5 4 2 7 7 C 1.50700 * 109.47395 * 295.94633 * 6 5 4 8 8 H 1.08010 * 119.99770 * 4.67754 * 7 6 5 9 9 C 1.37875 * 120.00475 * 184.66916 * 7 6 5 10 10 N 1.31517 * 119.99843 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99965 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46873 * 90.00860 * 11 9 7 13 13 H 1.48500 * 109.47029 * 210.00579 * 11 9 7 14 14 H 1.48495 * 109.47331 * 330.00390 * 11 9 7 15 15 C 1.46903 * 110.99934 * 274.00786 * 5 4 2 16 16 C 1.50706 * 109.47002 * 80.09374 * 15 5 4 17 17 O 1.21286 * 120.00200 * 6.68564 * 16 15 5 18 18 N 1.34776 * 119.99920 * 186.68938 * 16 15 5 19 19 C 1.39976 * 120.00030 * 185.70355 * 18 16 15 20 20 C 1.38852 * 120.07342 * 23.01060 * 19 18 16 21 21 C 1.38119 * 119.93972 * 180.02562 * 20 19 18 22 22 C 1.38291 * 120.09213 * 359.96751 * 21 20 19 23 23 C 1.38250 * 120.15366 * 0.03276 * 22 21 20 24 24 C 1.38232 * 120.05824 * 359.97438 * 23 22 21 25 25 Cl 1.73596 * 120.05014 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46754 * 299.99568 * 1 2 3 27 27 H 1.09000 * 109.47632 * 59.99327 * 1 2 3 28 28 H 1.08998 * 109.47685 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46754 * 240.00432 * 2 1 3 30 30 H 1.09004 * 109.47458 * 300.60125 * 3 2 1 31 31 H 1.09000 * 109.46997 * 60.60252 * 3 2 1 32 32 H 1.09000 * 109.47113 * 180.59926 * 3 2 1 33 33 H 1.09001 * 109.47390 * 57.53541 * 4 2 1 34 34 H 1.09005 * 109.46991 * 297.53745 * 4 2 1 35 35 H 1.08998 * 109.47358 * 55.94593 * 6 5 4 36 36 H 1.09000 * 109.47596 * 175.95167 * 6 5 4 37 37 H 0.96998 * 119.99947 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.46864 * 320.09474 * 15 5 4 39 39 H 1.08999 * 109.47103 * 200.09454 * 15 5 4 40 40 H 0.96996 * 119.99799 * 5.70209 * 18 16 15 41 41 H 1.07997 * 120.02683 * 359.97362 * 20 19 18 42 42 H 1.07997 * 119.94917 * 179.97438 * 21 20 19 43 43 H 1.08003 * 119.92457 * 180.02562 * 22 21 20 44 44 H 1.08001 * 119.97820 * 179.72250 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5078 -0.7730 1.2197 6 6 4.0619 -0.7739 2.5802 7 6 3.7207 0.5258 3.2624 8 1 3.0861 1.2456 2.7667 9 6 4.2183 0.7960 4.5195 10 7 4.9913 -0.0803 5.1231 11 14 3.7958 2.4074 5.3648 12 1 2.5558 2.2368 6.1640 13 1 4.9117 2.8037 6.2610 14 1 3.5842 3.4625 4.3416 15 6 3.9785 -1.9382 0.4589 16 6 3.9113 -1.6356 -1.0159 17 8 3.6276 -0.5185 -1.3935 18 7 4.1666 -2.6064 -1.9153 19 6 4.2219 -2.2994 -3.2798 20 6 4.4930 -1.0009 -3.6904 21 6 4.5465 -0.7009 -5.0376 22 6 4.3310 -1.6919 -5.9777 23 6 4.0607 -2.9860 -5.5732 24 6 4.0056 -3.2932 -4.2266 25 17 3.6656 -4.9181 -3.7189 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6679 1.9595 -0.8846 31 1 1.6855 1.9531 0.8953 32 1 3.1300 1.4424 -0.0107 33 1 1.6411 -1.7355 1.2714 34 1 1.7132 -0.1827 2.1387 35 1 3.6367 -1.6033 3.1452 36 1 5.1451 -0.8850 2.5313 37 1 5.3417 0.1099 6.0073 38 1 3.3464 -2.7976 0.6826 39 1 5.0082 -2.1622 0.7374 40 1 4.3119 -3.5178 -1.6170 41 1 4.6612 -0.2262 -2.9570 42 1 4.7569 0.3090 -5.3571 43 1 4.3738 -1.4544 -7.0304 44 1 3.8884 -3.7568 -6.3098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:16 Heat of formation + Delta-G solvation = -21.744678 kcal Electronic energy + Delta-G solvation = -25718.127092 eV Core-core repulsion = 22081.947081 eV Total energy + Delta-G solvation = -3636.180011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73982 -39.87325 -38.31057 -37.44008 -35.87957 -35.44301 -34.43313 -31.70576 -31.19098 -29.57107 -27.99163 -27.79397 -26.03342 -24.24820 -23.50380 -22.52823 -21.43505 -20.61438 -19.10512 -18.48795 -17.90306 -17.47067 -17.30430 -16.59059 -16.07766 -15.91190 -15.41236 -15.33430 -15.15053 -15.01666 -14.59892 -14.46748 -14.21609 -14.13642 -13.76769 -13.45453 -13.05205 -12.96431 -12.82263 -12.73209 -12.67257 -12.59076 -12.44216 -12.37316 -12.02293 -11.97946 -11.74978 -11.61663 -11.38764 -11.35175 -10.89419 -10.59710 -10.47161 -9.76917 -9.04320 -8.96284 -8.18561 -6.25241 0.12902 0.31339 1.08761 1.40679 1.41934 1.53243 1.60931 1.89129 2.42158 2.75132 3.13860 3.30244 3.68298 3.84727 4.09281 4.13550 4.19734 4.34311 4.36975 4.38177 4.42284 4.48091 4.50495 4.66234 4.89200 4.91483 4.93624 5.02303 5.12656 5.14527 5.18547 5.23443 5.27515 5.31433 5.40477 5.42953 5.55312 5.69179 5.74882 5.80924 5.94190 6.05567 6.30599 6.36762 6.63407 6.89961 7.15107 7.43031 8.92509 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003187 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.440589 B = 8783.522900 C = 9134.312805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.108 4.108 4 C 0.070 3.930 5 N -0.523 5.523 6 C 0.211 3.789 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.959 3.041 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.034 3.966 16 C 0.513 3.487 17 O -0.497 6.497 18 N -0.666 5.666 19 C 0.153 3.847 20 C -0.147 4.147 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.089 4.089 24 C -0.084 4.084 25 Cl -0.066 7.066 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.047 0.953 33 H 0.029 0.971 34 H 0.058 0.942 35 H -0.031 1.031 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.419 0.581 41 H 0.136 0.864 42 H 0.147 0.853 43 H 0.163 0.837 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -8.092 -22.153 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.166 4.166 4 C -0.058 4.058 5 N -0.247 5.247 6 C 0.086 3.914 7 C -0.553 4.553 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.784 3.216 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.097 4.097 16 C 0.302 3.698 17 O -0.371 6.371 18 N -0.312 5.312 19 C 0.057 3.943 20 C -0.167 4.167 21 C -0.113 4.113 22 C -0.146 4.146 23 C -0.108 4.108 24 C -0.113 4.113 25 Cl -0.037 7.037 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.076 0.924 35 H -0.014 1.014 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.257 0.743 41 H 0.154 0.846 42 H 0.165 0.835 43 H 0.180 0.820 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.076 -7.027 -22.319 23.600 hybrid contribution -0.090 -0.653 1.738 1.859 sum -3.166 -7.680 -20.581 22.194 Atomic orbital electron populations 1.21810 0.95112 1.01439 1.01541 1.21356 0.94463 0.97067 0.98082 1.21377 1.01243 0.95439 0.98493 1.22190 0.86784 0.98035 0.98823 1.61565 1.08816 1.38362 1.15949 1.19426 0.93791 0.95128 0.83096 1.21446 1.29884 1.03386 1.00587 0.92009 1.25759 0.95096 1.00250 0.98093 1.70056 1.34955 1.36984 1.15302 0.85535 0.77841 0.79884 0.78316 1.19905 1.20804 1.19387 1.22068 1.03535 0.94002 0.90117 1.20969 0.75724 0.84545 0.88610 1.90589 1.43280 1.22628 1.80598 1.43581 1.70387 1.13274 1.03995 1.17731 0.99594 0.93973 0.83023 1.21532 1.01787 0.95347 0.98052 1.21465 0.97130 1.01064 0.91637 1.21437 1.00290 0.91515 1.01319 1.21205 0.98447 0.98450 0.92696 1.20797 1.10349 0.85791 0.94401 1.98357 1.93838 1.20090 1.91394 0.93330 0.92122 0.92615 0.89896 0.93880 0.95511 0.93361 0.95256 0.92363 1.01367 0.97037 0.92796 0.90481 0.87628 0.74289 0.84648 0.83490 0.81993 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.19 71.98 0.66 -3.45 16 2 C -0.09 -3.19 2.39 -10.80 -0.03 -3.22 16 3 C -0.11 -4.11 8.51 71.98 0.61 -3.50 16 4 C 0.07 2.73 4.20 86.30 0.36 3.09 16 5 N -0.52 -22.00 3.38 -905.37 -3.06 -25.06 16 6 C 0.21 10.84 4.66 85.56 0.40 11.24 16 7 C -0.51 -28.79 8.21 25.60 0.21 -28.57 16 8 H 0.06 3.47 7.16 -2.91 -0.02 3.44 16 9 C 0.01 0.34 5.46 84.65 0.46 0.80 16 10 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 11 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 C 0.03 1.13 5.53 85.56 0.47 1.60 16 16 C 0.51 15.73 6.85 87.66 0.60 16.33 16 17 O -0.50 -17.70 8.80 -3.05 -0.03 -17.73 16 18 N -0.67 -16.32 5.21 -303.41 -1.58 -17.90 16 19 C 0.15 3.71 6.46 38.16 0.25 3.96 16 20 C -0.15 -3.69 8.74 22.39 0.20 -3.50 16 21 C -0.09 -1.76 10.04 22.25 0.22 -1.54 16 22 C -0.13 -1.83 10.04 22.29 0.22 -1.61 16 23 C -0.09 -1.40 9.82 22.27 0.22 -1.18 16 24 C -0.08 -1.69 6.34 22.44 0.14 -1.55 16 25 Cl -0.07 -1.19 27.76 -2.72 -0.08 -1.26 16 26 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.99 4.54 -2.65 -0.01 2.98 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.05 2.09 6.97 -2.39 -0.02 2.08 16 33 H 0.03 1.05 7.47 -2.39 -0.02 1.04 16 34 H 0.06 2.60 6.39 -2.38 -0.02 2.58 16 35 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 36 H 0.01 0.64 7.86 -2.39 -0.02 0.62 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.08 2.20 7.53 -2.39 -0.02 2.18 16 39 H 0.11 3.35 7.69 -2.39 -0.02 3.34 16 40 H 0.42 8.39 7.71 -92.71 -0.72 7.68 16 41 H 0.14 4.12 5.66 -2.91 -0.02 4.10 16 42 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -65.34 366.04 2.87 -62.48 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.29 Total: 18.80 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.00 Total: -11.08 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -4.36 Total: -97.87 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.03 Total: -17.73 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -65.34 2.87 -62.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.733 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds