Wall clock time and date at job start Tue Mar 31 2020 14:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47101 * 2 1 4 4 N 1.46503 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99772 * 264.15454 * 4 3 2 6 6 H 1.08003 * 120.00128 * 7.75314 * 5 4 3 7 7 C 1.38809 * 120.00076 * 187.75165 * 5 4 3 8 8 N 1.31625 * 119.99876 * 25.76175 * 7 5 4 9 9 Si 1.86800 * 120.00093 * 205.76286 * 7 5 4 10 10 H 1.48504 * 109.47205 * 60.00248 * 9 7 5 11 11 H 1.48508 * 109.46824 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47084 * 299.99751 * 9 7 5 13 13 C 1.46503 * 120.00356 * 84.14740 * 4 3 2 14 14 C 1.50700 * 109.46571 * 90.00264 * 13 4 3 15 15 O 1.21284 * 120.00556 * 0.02562 * 14 13 4 16 16 N 1.34781 * 119.99576 * 179.72817 * 14 13 4 17 17 C 1.39977 * 120.00017 * 176.70250 * 16 14 13 18 18 C 1.38855 * 120.07408 * 137.41164 * 17 16 14 19 19 C 1.50698 * 120.02680 * 0.02562 * 18 17 16 20 20 C 1.38116 * 119.94125 * 179.97438 * 18 17 16 21 21 C 1.38299 * 120.09344 * 0.02562 * 20 18 17 22 22 C 1.50700 * 119.92313 * 179.97438 * 21 20 18 23 23 C 1.38260 * 120.14808 * 0.02562 * 21 20 18 24 24 C 1.38229 * 120.05850 * 359.74292 * 23 21 20 25 25 Cl 1.73603 * 120.04695 * 180.25662 * 24 23 21 26 26 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46798 * 299.99360 * 1 2 3 28 28 H 1.08999 * 109.46991 * 60.00168 * 1 2 3 29 29 H 1.09004 * 109.46542 * 240.00040 * 2 1 3 30 30 H 1.09001 * 109.47256 * 120.00307 * 2 1 3 31 31 H 1.09000 * 109.47500 * 60.00074 * 3 2 1 32 32 H 1.09001 * 109.47317 * 300.00270 * 3 2 1 33 33 H 0.97000 * 119.99950 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46731 * 330.00692 * 13 4 3 35 35 H 1.08990 * 109.47321 * 210.00463 * 13 4 3 36 36 H 0.97002 * 119.99937 * 356.69995 * 16 14 13 37 37 H 1.08998 * 109.46995 * 90.00499 * 19 18 17 38 38 H 1.09001 * 109.46852 * 209.99542 * 19 18 17 39 39 H 1.08995 * 109.47218 * 329.99901 * 19 18 17 40 40 H 1.08001 * 119.95354 * 180.02562 * 20 18 17 41 41 H 1.09001 * 109.47288 * 90.00082 * 22 21 20 42 42 H 1.09001 * 109.46765 * 209.99849 * 22 21 20 43 43 H 1.08997 * 109.47112 * 329.99405 * 22 21 20 44 44 H 1.08001 * 119.96761 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5631 1.1789 6 1 3.6579 1.5323 2.1181 7 6 5.5687 1.7251 1.1673 8 7 6.1600 2.2583 0.1192 9 14 6.5848 1.1862 2.6392 10 1 6.3965 -0.2695 2.8645 11 1 8.0201 1.4646 2.3786 12 1 6.1458 1.9345 3.8444 13 6 4.2371 1.3134 -1.2630 14 6 4.4880 2.6826 -1.8404 15 8 4.0945 3.6691 -1.2549 16 7 5.1549 2.8111 -3.0046 17 6 5.3279 4.0771 -3.5760 18 6 6.5533 4.4313 -4.1247 19 6 7.6990 3.4525 -4.1063 20 6 6.7208 5.6811 -4.6883 21 6 5.6701 6.5801 -4.7064 22 6 5.8573 7.9430 -5.3218 23 6 4.4487 6.2318 -4.1601 24 6 4.2728 4.9810 -3.5988 25 17 2.7370 4.5415 -2.9189 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 7.1233 2.3718 0.1113 34 1 3.6477 0.7249 -1.9662 35 1 5.1895 0.8155 -1.0815 36 1 5.5150 2.0262 -3.4464 37 1 7.6743 2.8472 -5.0125 38 1 8.6418 3.9976 -4.0592 39 1 7.6097 2.8049 -3.2342 40 1 7.6737 5.9566 -5.1155 41 1 5.6017 7.9018 -6.3806 42 1 5.2090 8.6607 -4.8191 43 1 6.8966 8.2521 -5.2106 44 1 3.6300 6.9360 -4.1762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:01 Heat of formation + Delta-G solvation = 15.032116 kcal Electronic energy + Delta-G solvation = -26212.327135 eV Core-core repulsion = 22577.741886 eV Total energy + Delta-G solvation = -3634.585250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.85272 -37.96083 -35.92703 -35.71012 -34.24413 -32.93554 -32.16078 -30.87946 -30.49484 -27.55333 -27.01564 -25.57744 -25.41269 -22.46606 -21.93113 -20.66502 -20.11354 -19.30609 -17.41365 -16.49942 -16.05634 -15.31620 -15.16446 -14.99871 -14.34223 -13.96897 -13.87542 -13.72366 -13.35713 -13.15095 -13.05714 -13.02640 -12.76409 -12.47767 -12.35285 -12.12121 -11.99820 -11.56375 -11.40898 -11.28713 -11.00972 -10.97810 -10.71848 -10.68130 -10.59300 -10.43292 -10.27137 -9.99448 -9.81001 -9.76279 -9.07219 -8.58002 -8.25838 -8.06240 -7.43601 -6.90401 -5.80556 -3.03966 1.53260 1.59074 2.81338 3.41623 3.47573 3.49245 3.82289 4.01503 4.37229 4.56797 4.95828 4.99323 5.30657 5.35122 5.41843 5.44742 5.50553 5.62362 5.62641 5.64168 5.72565 5.79691 5.85548 5.98384 6.01000 6.03634 6.23989 6.28052 6.36670 6.38554 6.44286 6.47873 6.58500 6.62164 6.72313 6.78412 6.90754 6.99836 7.06556 7.19109 7.57866 7.79804 8.24453 8.48897 9.16845 9.67591 9.87618 10.28771 11.29505 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.004917 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.840544 B = 5693.069717 C = 7152.137232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.572 5.572 5 C -0.243 4.243 6 H 0.077 0.923 7 C -0.001 4.001 8 N -0.897 5.897 9 Si 0.899 3.101 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.286 1.286 13 C 0.169 3.831 14 C 0.516 3.484 15 O -0.485 6.485 16 N -0.689 5.689 17 C 0.184 3.816 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.105 4.105 23 C -0.104 4.104 24 C -0.038 4.038 25 Cl -0.043 7.043 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.252 0.748 34 H 0.036 0.964 35 H 0.103 0.897 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 2.459 -12.886 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.027 3.973 4 N -0.290 5.290 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.543 5.543 9 Si 0.730 3.270 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.213 1.213 13 C 0.038 3.962 14 C 0.302 3.698 15 O -0.354 6.354 16 N -0.336 5.336 17 C 0.086 3.914 18 C -0.108 4.108 19 C -0.167 4.167 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.161 4.161 23 C -0.123 4.123 24 C -0.068 4.068 25 Cl -0.014 7.014 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.232 0.768 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.604 3.100 -12.245 12.732 hybrid contribution 0.856 -0.401 0.702 1.177 sum -0.748 2.698 -11.543 11.878 Atomic orbital electron populations 1.21718 0.97226 1.00442 1.01107 1.22121 0.93833 1.00694 1.01603 1.20760 0.84322 0.93013 0.99247 1.43893 0.99679 1.82978 1.02466 1.19208 0.89507 1.43407 0.85071 0.90561 1.24635 0.97171 1.00456 0.97527 1.69932 1.09241 1.44412 1.30732 0.86384 0.79222 0.78828 0.82614 1.21345 1.21917 1.21255 1.20639 0.98077 0.90969 0.86526 1.22349 0.75365 0.94689 0.77383 1.90643 1.48394 1.39806 1.56580 1.44214 1.59291 1.05272 1.24863 1.17417 0.90960 0.87924 0.95126 1.19702 0.93277 0.95950 1.01848 1.20693 0.95332 0.98077 1.02598 1.20705 0.98511 0.92777 1.00270 1.19602 0.93320 0.96660 1.01349 1.20676 1.02215 0.93111 1.00141 1.20687 0.97648 0.94614 0.99394 1.20834 0.88140 0.96115 1.01691 1.98368 1.27287 1.92836 1.82889 0.93677 0.93208 0.93439 0.93053 0.92073 0.93331 0.95085 0.93737 0.94621 0.87948 0.76818 0.91660 0.91687 0.90429 0.86032 0.91615 0.91812 0.91777 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.50 6.25 -26.73 -0.17 -2.67 16 3 C 0.15 3.24 5.67 -4.04 -0.02 3.21 16 4 N -0.57 -13.95 2.02 -174.61 -0.35 -14.30 16 5 C -0.24 -6.57 9.67 -15.06 -0.15 -6.72 16 6 H 0.08 2.06 7.95 -52.48 -0.42 1.64 16 7 C 0.00 -0.02 4.89 -17.43 -0.09 -0.11 16 8 N -0.90 -24.69 9.02 55.49 0.50 -24.19 16 9 Si 0.90 21.69 29.62 -169.99 -5.04 16.65 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 C 0.17 3.80 5.45 -5.19 -0.03 3.78 16 14 C 0.52 11.72 4.69 -10.98 -0.05 11.67 16 15 O -0.49 -12.87 12.29 5.55 0.07 -12.80 16 16 N -0.69 -13.03 4.47 -9.83 -0.04 -13.07 16 17 C 0.18 3.40 6.07 -83.64 -0.51 2.89 16 18 C -0.10 -1.65 5.90 -104.44 -0.62 -2.27 16 19 C -0.11 -1.47 9.54 36.00 0.34 -1.12 16 20 C -0.10 -1.45 9.35 -39.60 -0.37 -1.82 16 21 C -0.11 -1.50 5.88 -104.59 -0.62 -2.12 16 22 C -0.10 -1.07 10.01 36.01 0.36 -0.71 16 23 C -0.10 -1.66 9.48 -39.58 -0.38 -2.03 16 24 C -0.04 -0.71 5.85 -39.32 -0.23 -0.94 16 25 Cl -0.04 -0.86 24.15 -51.86 -1.25 -2.11 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 1.06 7.99 -51.93 -0.42 0.64 16 32 H 0.03 0.66 8.11 -51.93 -0.42 0.23 16 33 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.10 2.46 6.27 -51.93 -0.33 2.13 16 36 H 0.40 6.29 8.23 -40.82 -0.34 5.95 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.08 1.19 7.31 -51.93 -0.38 0.81 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 44 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -31.61 371.12 -9.58 -41.19 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.91 Total: 3.74 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.14 Total: -0.70 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.10 Total: -51.57 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.04 Total: 16.65 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.25 Total: -2.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.61 -9.58 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.222 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds