Wall clock time and date at job start Tue Mar 31 2020 13:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47010 * 184.99921 * 4 3 2 6 6 N 1.46898 * 109.47036 * 59.99801 * 3 2 1 7 7 C 1.46894 * 110.99886 * 60.00174 * 6 3 2 8 8 C 1.50702 * 109.47198 * 179.97438 * 7 6 3 9 9 O 1.21291 * 119.99880 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00187 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99842 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00219 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99698 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99788 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46940 * 60.00507 * 15 13 11 17 17 H 1.48505 * 109.47115 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47661 * 300.00680 * 15 13 11 19 19 C 1.50706 * 109.46728 * 299.99870 * 3 2 1 20 20 C 1.38241 * 119.98981 * 329.72370 * 19 3 2 21 21 C 1.38210 * 120.01139 * 179.72300 * 20 19 3 22 22 C 1.38349 * 119.98969 * 0.55498 * 21 20 19 23 23 Cl 1.73598 * 120.01695 * 179.70185 * 22 21 20 24 24 C 1.38361 * 119.97127 * 359.71727 * 22 21 20 25 25 C 1.38214 * 119.98666 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47025 * 300.00378 * 1 2 3 27 27 H 1.09002 * 109.47171 * 60.00260 * 1 2 3 28 28 H 1.09005 * 109.46633 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47466 * 239.99783 * 2 1 3 30 30 H 1.09002 * 109.47171 * 119.99740 * 2 1 3 31 31 H 1.08999 * 109.47009 * 304.99648 * 4 3 2 32 32 H 1.08995 * 109.47158 * 64.99953 * 4 3 2 33 33 H 1.08999 * 109.46758 * 300.00213 * 5 4 3 34 34 H 1.09000 * 109.46790 * 59.99693 * 5 4 3 35 35 H 1.09001 * 109.47043 * 179.97438 * 5 4 3 36 36 H 1.00900 * 111.00258 * 296.04766 * 6 3 2 37 37 H 1.08997 * 109.47544 * 299.99912 * 7 6 3 38 38 H 1.09000 * 109.47320 * 60.00019 * 7 6 3 39 39 H 0.96997 * 120.00400 * 359.97438 * 10 8 7 40 40 H 0.96995 * 120.00143 * 179.97438 * 14 13 11 41 41 H 1.08002 * 119.99152 * 0.02562 * 20 19 3 42 42 H 1.08002 * 120.00562 * 180.27305 * 21 20 19 43 43 H 1.07999 * 120.00328 * 179.97438 * 24 22 21 44 44 H 1.07997 * 119.99198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8796 0.1251 6 7 1.5503 2.1350 1.1994 7 6 2.0213 1.4689 2.4210 8 6 1.5007 2.2062 3.6278 9 8 0.8060 3.1901 3.4843 10 7 1.8078 1.7730 4.8665 11 6 1.3346 2.4441 5.9644 12 1 0.7160 3.3202 5.8366 13 6 1.6508 1.9971 7.2415 14 7 2.4038 0.9315 7.3970 15 14 1.0066 2.9119 8.7374 16 1 -0.4782 2.9133 8.7152 17 1 1.4820 2.2380 9.9724 18 1 1.5032 4.3112 8.7138 19 6 1.5376 2.1529 -1.2306 20 6 1.3128 1.4426 -2.3950 21 6 0.8466 2.0926 -3.5221 22 6 0.6159 3.4563 -3.4883 23 17 0.0378 4.2747 -4.9059 24 6 0.8466 4.1676 -2.3242 25 6 1.3077 3.5156 -1.1961 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9337 0.8530 0.8410 32 1 3.9329 1.0084 -0.9322 33 1 3.7163 3.4691 -0.7165 34 1 3.7170 3.3137 1.0566 35 1 5.1701 2.8796 0.1251 36 1 0.5438 2.2051 1.1909 37 1 1.6579 0.4415 2.4378 38 1 3.1112 1.4691 2.4378 39 1 2.3636 0.9864 4.9813 40 1 2.6248 0.6197 8.2885 41 1 1.4968 0.3787 -2.4225 42 1 0.6668 1.5368 -4.4306 43 1 0.6671 5.2323 -2.2973 44 1 1.4881 4.0708 -0.2875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:02 Heat of formation + Delta-G solvation = -24.536332 kcal Electronic energy + Delta-G solvation = -25586.643230 eV Core-core repulsion = 21950.342164 eV Total energy + Delta-G solvation = -3636.301066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48867 -38.41826 -37.42321 -36.31610 -33.96183 -32.48272 -32.08807 -31.20682 -30.88608 -30.13543 -27.09615 -25.77896 -24.25092 -22.64730 -22.54085 -21.96612 -19.52887 -18.89350 -17.92683 -17.44352 -16.49060 -15.73166 -15.54407 -15.04035 -14.78116 -14.74251 -14.29941 -14.09799 -13.69061 -13.62750 -13.45082 -13.28745 -13.18306 -12.74328 -12.66501 -12.26127 -11.91246 -11.77561 -11.68103 -11.55003 -11.51353 -11.41613 -11.07368 -10.98612 -10.96628 -10.71332 -10.60138 -10.45245 -10.43448 -10.21482 -9.50079 -9.07585 -8.64681 -8.44906 -8.04292 -7.95771 -6.42043 -3.82794 1.04397 1.23018 2.00952 3.19686 3.25432 3.29754 3.53746 3.91130 4.05632 4.26984 4.53071 4.68275 4.79732 4.80916 4.93565 5.14929 5.16525 5.25524 5.28207 5.35417 5.45690 5.46669 5.50055 5.61148 5.67189 5.83271 5.87920 5.91239 5.93987 5.95512 6.01271 6.10963 6.12889 6.19494 6.23476 6.27304 6.34878 6.51642 6.61645 6.75082 7.24176 7.54648 7.65383 8.05957 8.60997 9.17669 9.54301 10.05712 10.75650 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.002700 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.609706 B =10369.085188 C =10792.935279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.156 4.156 3 C 0.154 3.846 4 C -0.106 4.106 5 C -0.148 4.148 6 N -0.650 5.650 7 C 0.045 3.955 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.057 4.057 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.039 4.039 23 Cl -0.082 7.082 24 C -0.115 4.115 25 C -0.079 4.079 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.351 0.649 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -2.191 -20.800 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.195 4.195 3 C 0.062 3.938 4 C -0.144 4.144 5 C -0.205 4.205 6 N -0.283 5.283 7 C -0.087 4.087 8 C 0.227 3.773 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.058 4.058 20 C -0.124 4.124 21 C -0.136 4.136 22 C -0.065 4.065 23 Cl -0.054 7.054 24 C -0.134 4.134 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.173 0.827 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.784 -1.069 -20.816 20.858 hybrid contribution -0.562 -0.905 0.739 1.297 sum 0.222 -1.974 -20.077 20.175 Atomic orbital electron populations 1.21864 0.95431 1.01844 1.02469 1.22313 0.96779 0.97701 1.02732 1.19865 0.95141 0.90413 0.88371 1.21569 0.92539 0.98674 1.01616 1.21740 0.99331 0.95984 1.03460 1.60306 1.17542 1.51401 0.99072 1.21763 1.01222 0.95871 0.89851 1.19813 0.85947 0.87492 0.84036 1.90523 1.42079 1.28323 1.85839 1.41852 1.46152 1.27759 1.04295 1.19642 1.29188 1.10589 0.83433 0.88008 1.25250 0.96966 0.96586 0.99106 1.69598 1.37075 1.23558 1.24144 0.85934 0.79148 0.79320 0.79914 1.19943 1.20997 1.19882 1.19803 0.97752 0.93914 0.94323 1.21036 0.99263 1.00148 0.91906 1.20932 1.01021 0.92388 0.99267 1.20949 1.03720 0.93118 0.88728 1.98358 1.87538 1.79381 1.40074 1.21136 1.00205 1.00496 0.91523 1.21276 0.96016 0.94195 0.98227 0.92399 0.92169 0.92632 0.91392 0.90902 0.91412 0.92043 0.92851 0.90675 0.93738 0.82742 0.93501 0.89292 0.77517 0.91838 0.85146 0.85391 0.85136 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.25 37.16 0.34 -1.36 16 2 C -0.16 -1.61 4.11 -26.73 -0.11 -1.72 16 3 C 0.15 1.75 0.28 -132.75 -0.04 1.71 16 4 C -0.11 -1.17 4.43 -26.73 -0.12 -1.29 16 5 C -0.15 -1.78 9.26 37.16 0.34 -1.43 16 6 N -0.65 -9.49 3.54 -102.40 -0.36 -9.85 16 7 C 0.05 0.75 5.25 -4.98 -0.03 0.72 16 8 C 0.44 10.01 7.82 -10.99 -0.09 9.93 16 9 O -0.58 -15.27 15.78 5.55 0.09 -15.18 16 10 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 11 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 12 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 15 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.06 -0.63 3.58 -104.62 -0.37 -1.01 16 20 C -0.11 -1.02 7.79 -39.59 -0.31 -1.33 16 21 C -0.12 -1.14 9.83 -39.55 -0.39 -1.53 16 22 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 23 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 24 C -0.11 -1.27 9.83 -39.54 -0.39 -1.66 16 25 C -0.08 -0.93 7.56 -39.59 -0.30 -1.23 16 26 H 0.06 0.72 6.76 -51.93 -0.35 0.37 16 27 H 0.06 0.63 6.19 -51.93 -0.32 0.31 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.59 6.51 -51.93 -0.34 0.25 16 30 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.07 0.75 6.69 -51.93 -0.35 0.40 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.63 6.26 -51.93 -0.33 0.30 16 34 H 0.07 1.08 7.28 -51.93 -0.38 0.70 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.35 5.58 6.72 -39.29 -0.26 5.31 16 37 H 0.05 0.71 6.30 -51.93 -0.33 0.39 16 38 H 0.09 1.37 6.34 -51.93 -0.33 1.04 16 39 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.13 1.06 6.17 -52.49 -0.32 0.73 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.15 1.96 7.38 -52.49 -0.39 1.57 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -29.22 360.89 -8.61 -37.82 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.97 Total: 14.54 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.94 Total: -8.72 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.30 Total: -47.48 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.22 -8.61 -37.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.286 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds