Wall clock time and date at job start Tue Mar 31 2020 14:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 H 1.08997 * 109.47205 * 55.00421 * 3 2 1 5 5 N 1.46496 * 109.47468 * 294.99668 * 3 2 1 6 6 C 1.34774 * 119.99544 * 85.00158 * 5 3 2 7 7 O 1.21279 * 120.00472 * 0.02562 * 6 5 3 8 8 C 1.50706 * 120.00020 * 180.02562 * 6 5 3 9 9 N 1.46893 * 109.47176 * 180.02562 * 8 6 5 10 10 C 1.46896 * 111.00644 * 66.04281 * 9 8 6 11 11 C 1.46902 * 110.99788 * 189.99911 * 9 8 6 12 12 C 1.50704 * 109.46854 * 169.99574 * 11 9 8 13 13 H 1.07998 * 120.00234 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99745 * 179.97438 * 12 11 9 15 15 N 1.31521 * 120.00326 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00048 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47106 * 90.00448 * 16 14 12 18 18 H 1.48505 * 109.47377 * 210.00195 * 16 14 12 19 19 H 1.48501 * 109.47122 * 330.00596 * 16 14 12 20 20 C 1.50707 * 109.47004 * 174.99860 * 3 2 1 21 21 C 1.38241 * 119.98525 * 79.72863 * 20 3 2 22 22 C 1.38219 * 120.01068 * 179.72757 * 21 20 3 23 23 C 1.38346 * 119.98607 * 0.54593 * 22 21 20 24 24 Cl 1.73602 * 120.01359 * 179.74949 * 23 22 21 25 25 C 1.38352 * 119.97562 * 359.72565 * 23 22 21 26 26 C 1.38214 * 119.98542 * 0.02562 * 25 23 22 27 27 H 1.09004 * 109.46698 * 59.99888 * 1 2 3 28 28 H 1.08994 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46888 * 299.99840 * 1 2 3 30 30 H 1.09006 * 109.47051 * 239.99999 * 2 1 3 31 31 H 1.09004 * 109.47015 * 120.00555 * 2 1 3 32 32 H 0.96994 * 120.00700 * 265.00278 * 5 3 2 33 33 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 34 34 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 35 35 H 1.08997 * 109.47186 * 59.99756 * 10 9 8 36 36 H 1.08993 * 109.47654 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47132 * 300.00059 * 10 9 8 38 38 H 1.09000 * 109.46970 * 289.99273 * 11 9 8 39 39 H 1.09003 * 109.47253 * 49.99996 * 11 9 8 40 40 H 0.96996 * 120.00390 * 179.97438 * 15 14 12 41 41 H 1.08008 * 119.99240 * 359.97438 * 21 20 3 42 42 H 1.08001 * 120.00504 * 180.27270 * 22 21 20 43 43 H 1.07997 * 120.00578 * 179.97438 * 25 23 22 44 44 H 1.07995 * 119.99399 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 7 1.6526 2.0975 -1.2518 6 6 0.4354 2.6644 -1.3669 7 8 -0.3391 2.6328 -0.4341 8 6 0.0365 3.3378 -2.6548 9 7 -1.3256 3.8726 -2.5263 10 6 -1.3746 4.9562 -1.5357 11 6 -1.8385 4.3245 -3.8266 12 6 -3.3085 4.6344 -3.7065 13 1 -3.8112 4.5087 -2.7589 14 6 -4.0112 5.0794 -4.8060 15 7 -3.3989 5.2330 -5.9599 16 14 -5.8330 5.4642 -4.6571 17 1 -6.0086 6.8894 -4.2786 18 1 -6.5004 5.2123 -5.9596 19 1 -6.4385 4.5970 -3.6147 20 6 3.5420 1.4442 0.1239 21 6 4.3271 1.1973 -0.9868 22 6 5.7048 1.2043 -0.8750 23 6 6.2977 1.4473 0.3511 24 17 8.0279 1.4498 0.4937 25 6 5.5114 1.6887 1.4635 26 6 4.1339 1.6865 1.3494 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.2720 2.1231 -1.9977 33 1 0.7279 4.1531 -2.8678 34 1 0.0675 2.6132 -3.4685 35 1 -0.7104 5.7626 -1.8462 36 1 -2.3941 5.3342 -1.4607 37 1 -1.0555 4.5760 -0.5652 38 1 -1.3023 5.2213 -4.1369 39 1 -1.6923 3.5388 -4.5678 40 1 -3.8934 5.5458 -6.7335 41 1 3.8640 1.0028 -1.9430 42 1 6.3181 1.0158 -1.7437 43 1 5.9737 1.8780 2.4210 44 1 3.5200 1.8754 2.2176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083219050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:40 Heat of formation + Delta-G solvation = -15.260194 kcal Electronic energy + Delta-G solvation = -24713.214505 eV Core-core repulsion = 21077.315682 eV Total energy + Delta-G solvation = -3635.898823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47599 -39.25460 -37.08054 -36.29618 -35.26009 -32.60631 -32.32913 -31.47965 -31.09608 -28.31095 -26.96571 -25.97893 -24.05009 -23.38563 -22.46537 -21.30881 -20.37871 -19.96351 -17.82687 -16.87310 -16.52888 -16.15037 -15.65853 -15.53360 -15.18545 -14.66772 -14.35815 -14.14595 -14.00503 -13.94456 -13.78738 -13.61140 -13.03672 -12.76340 -12.64674 -12.36975 -11.96193 -11.83338 -11.77916 -11.44692 -11.42399 -11.23845 -11.17910 -11.03974 -10.84795 -10.78326 -10.70070 -10.48760 -9.95898 -9.49090 -9.46286 -9.19200 -8.96019 -8.87238 -8.43080 -7.22926 -6.02480 -4.02933 0.67238 0.85553 1.73128 2.95598 3.07500 3.31966 3.33680 3.39563 3.45570 4.22452 4.33544 4.44595 4.45264 4.85065 4.88270 4.95417 5.03814 5.06766 5.13865 5.24521 5.33853 5.39225 5.46834 5.61397 5.73631 5.75545 5.79461 5.80364 5.81463 5.99338 6.05857 6.16860 6.32013 6.34141 6.40896 6.52949 6.57261 6.92322 7.23080 7.30601 7.56245 7.81794 8.05803 8.18891 8.48862 8.57443 9.05158 9.61133 11.08579 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.002201 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.665656 B =12717.797047 C =13261.018241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.186 3.814 4 H 0.098 0.902 5 N -0.736 5.736 6 C 0.517 3.483 7 O -0.510 6.510 8 C 0.036 3.964 9 N -0.522 5.522 10 C 0.033 3.967 11 C 0.193 3.807 12 C -0.504 4.504 13 H 0.065 0.935 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.081 4.081 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.037 4.037 24 Cl -0.073 7.073 25 C -0.107 4.107 26 C -0.096 4.096 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.396 0.604 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.004 0.996 36 H 0.073 0.927 37 H 0.065 0.935 38 H -0.008 1.008 39 H 0.030 0.970 40 H 0.261 0.739 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.757 -9.962 12.616 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.081 3.919 4 H 0.116 0.884 5 N -0.391 5.391 6 C 0.304 3.696 7 O -0.383 6.383 8 C -0.096 4.096 9 N -0.247 5.247 10 C -0.115 4.115 11 C 0.068 3.932 12 C -0.543 4.543 13 H 0.083 0.917 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.064 4.064 24 Cl -0.044 7.044 25 C -0.126 4.126 26 C -0.114 4.114 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.022 0.978 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.010 0.990 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 20.955 -10.293 13.285 26.862 hybrid contribution 0.189 0.890 -0.814 1.221 sum 21.144 -9.403 12.471 26.287 Atomic orbital electron populations 1.21825 0.93945 1.00752 1.03873 1.21945 0.97580 0.94831 1.02113 1.19827 0.88696 0.94307 0.89031 0.88426 1.46208 1.17512 1.59552 1.15865 1.20942 0.80467 0.77713 0.90494 1.90658 1.50260 1.57057 1.40348 1.21956 0.93708 0.99444 0.94456 1.61856 1.15850 1.35095 1.11851 1.22359 1.01940 0.91506 0.95691 1.19788 0.95424 0.94189 0.83785 1.21154 0.93613 1.43144 0.96357 0.91682 1.24987 0.98700 0.95794 0.95218 1.69955 1.36346 1.47205 1.00538 0.86478 0.84872 0.78591 0.77385 1.20748 1.21283 1.19705 1.20141 0.95512 0.98718 0.93833 1.20947 0.92680 0.99448 0.98870 1.21055 0.94999 1.00065 0.96336 1.20970 0.84633 1.05104 0.95654 1.98379 1.10742 1.97023 1.98284 1.21056 0.93402 1.00174 0.97934 1.21010 0.93920 0.98960 0.97525 0.91553 0.93598 0.92094 0.91803 0.91399 0.76901 0.93199 0.88586 0.97803 0.90791 0.91683 0.99050 0.95201 0.92954 0.84921 0.84736 0.84772 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.52 37.16 0.32 -1.52 16 2 C -0.13 -1.22 5.58 -26.73 -0.15 -1.37 16 3 C 0.19 1.84 2.46 -69.08 -0.17 1.67 16 4 H 0.10 1.11 7.44 -51.93 -0.39 0.73 16 5 N -0.74 -8.07 4.98 -54.93 -0.27 -8.34 16 6 C 0.52 7.90 6.12 -10.98 -0.07 7.83 16 7 O -0.51 -9.36 11.45 5.56 0.06 -9.30 16 8 C 0.04 0.62 5.45 -4.98 -0.03 0.59 16 9 N -0.52 -11.54 4.49 -245.83 -1.10 -12.64 16 10 C 0.03 0.70 9.03 60.06 0.54 1.24 16 11 C 0.19 5.00 4.72 -4.97 -0.02 4.98 16 12 C -0.50 -14.32 8.46 -34.44 -0.29 -14.61 16 13 H 0.07 1.86 7.12 -52.49 -0.37 1.49 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.08 -0.67 4.95 -104.62 -0.52 -1.19 16 21 C -0.10 -0.75 9.05 -39.59 -0.36 -1.11 16 22 C -0.11 -0.79 9.83 -39.55 -0.39 -1.17 16 23 C -0.04 -0.30 6.32 -39.50 -0.25 -0.54 16 24 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.07 16 25 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 26 C -0.10 -0.73 9.67 -39.59 -0.38 -1.11 16 27 H 0.07 1.01 5.65 -51.93 -0.29 0.72 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 3.40 6.88 -40.82 -0.28 3.12 16 33 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.10 1.52 7.93 -51.93 -0.41 1.11 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.07 1.66 6.76 -51.93 -0.35 1.31 16 37 H 0.06 1.30 5.88 -51.93 -0.31 0.99 16 38 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 39 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 0.78 6.93 -52.48 -0.36 0.42 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.84 8.04 -52.49 -0.42 0.42 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -32.01 371.11 -10.28 -42.29 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.52 Total: -0.39 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.25 Total: -6.06 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.64 Total: -46.90 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.01 -10.28 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.033 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds