Wall clock time and date at job start Tue Mar 31 2020 13:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 C 1.50699 * 109.47262 * 120.00271 * 2 1 3 5 5 N 1.31234 * 124.05226 * 300.17118 * 4 2 1 6 6 N 1.27341 * 120.03851 * 180.33920 * 5 4 2 7 7 S 1.56640 * 109.73804 * 359.71287 * 6 5 4 8 8 C 1.38241 * 124.05475 * 119.99366 * 4 2 1 9 9 C 1.47172 * 128.47913 * 0.02562 * 8 4 2 10 10 O 1.21624 * 119.99807 * 359.69101 * 9 8 4 11 11 N 1.34777 * 120.00059 * 179.69918 * 9 8 4 12 12 C 1.46495 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.53039 * 109.46476 * 204.99626 * 12 11 9 14 14 C 1.53192 * 109.31624 * 178.61195 * 13 12 11 15 15 N 1.46925 * 108.89163 * 54.56131 * 14 13 12 16 16 C 1.36940 * 120.62821 * 126.46045 * 15 14 13 17 17 H 1.08000 * 119.99751 * 331.92858 * 16 15 14 18 18 C 1.38810 * 120.00078 * 151.92771 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.17980 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.18147 * 18 16 15 21 21 H 1.48509 * 109.47304 * 59.99932 * 20 18 16 22 22 H 1.48501 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47535 * 299.99868 * 20 18 16 24 24 C 1.46954 * 118.71946 * 306.64559 * 15 14 13 25 25 C 1.53044 * 109.46278 * 84.92375 * 12 11 9 26 26 H 1.09004 * 109.46869 * 299.99887 * 1 2 3 27 27 H 1.09004 * 109.46852 * 59.99708 * 1 2 3 28 28 H 1.08992 * 109.47567 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46869 * 240.00113 * 2 1 3 30 30 H 1.08998 * 109.47212 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47167 * 300.00512 * 3 2 1 32 32 H 1.08997 * 109.46704 * 59.99907 * 3 2 1 33 33 H 0.96996 * 119.99854 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.44555 * 324.96623 * 12 11 9 35 35 H 1.09005 * 109.49298 * 58.66180 * 13 12 11 36 36 H 1.08998 * 109.49763 * 298.56780 * 13 12 11 37 37 H 1.08997 * 109.58838 * 174.42439 * 14 13 12 38 38 H 1.09002 * 109.58672 * 294.71002 * 14 13 12 39 39 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.47125 * 293.56762 * 24 15 14 41 41 H 1.09000 * 109.71403 * 173.28134 * 24 15 14 42 42 H 1.09000 * 109.50000 * 301.34377 * 25 12 11 43 43 H 1.09003 * 109.49095 * 61.43586 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7621 -0.3339 2.4582 6 7 2.2331 -0.9883 3.4439 7 16 3.0888 -2.1911 2.9199 8 6 2.8302 -1.8390 1.2012 9 6 3.3451 -2.5664 0.0299 10 8 3.0694 -2.1856 -1.0918 11 7 4.1218 -3.6546 0.2004 12 6 4.6338 -4.3790 -0.9655 13 6 4.9220 -5.8310 -0.5774 14 6 5.4243 -6.5940 -1.8072 15 7 6.5777 -5.8801 -2.3717 16 6 7.7623 -6.5312 -2.5906 17 1 8.0324 -7.3806 -1.9805 18 6 8.6160 -6.0997 -3.5964 19 7 8.1680 -5.3015 -4.5422 20 14 10.4005 -6.6518 -3.6077 21 1 10.4598 -8.1330 -3.6978 22 1 11.0953 -6.0571 -4.7777 23 1 11.0649 -6.2049 -2.3571 24 6 6.4367 -4.4530 -2.6929 25 6 5.9230 -3.7140 -1.4532 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 4.3418 -3.9581 1.0950 34 1 3.8900 -4.3567 -1.7620 35 1 4.0084 -6.2971 -0.2082 36 1 5.6838 -5.8550 0.2018 37 1 5.7245 -7.6004 -1.5154 38 1 4.6300 -6.6510 -2.5515 39 1 8.7645 -5.0002 -5.2453 40 1 5.7258 -4.3331 -3.5104 41 1 7.4037 -4.0450 -2.9869 42 1 5.7220 -2.6733 -1.7073 43 1 6.6754 -3.7579 -0.6657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087442098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:55 Heat of formation + Delta-G solvation = 44.065315 kcal Electronic energy + Delta-G solvation = -25349.575560 eV Core-core repulsion = 21750.585742 eV Total energy + Delta-G solvation = -3598.989818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31990 -39.76390 -37.46958 -35.77200 -34.59566 -32.43480 -31.38010 -30.13172 -29.57044 -27.62918 -27.33384 -25.22491 -23.59065 -22.36805 -22.23772 -21.47931 -20.48449 -19.40223 -18.14784 -17.61589 -16.71930 -16.20562 -16.02911 -15.38865 -14.89960 -14.72587 -14.46705 -14.34570 -13.85819 -13.58721 -13.34494 -13.22854 -13.07030 -12.72350 -12.64685 -12.44731 -12.35334 -11.60254 -11.46915 -11.44461 -11.24724 -11.09915 -11.01530 -10.75972 -10.57030 -10.49033 -10.32938 -10.17484 -10.08593 -10.00081 -9.97068 -9.83791 -9.62653 -8.91962 -8.48813 -6.73984 -5.83092 -3.26533 -0.50828 0.54920 1.21399 1.71441 2.86794 2.93944 3.35747 3.42118 3.42590 3.62522 4.25134 4.45599 4.52400 4.80066 4.93133 4.93743 5.18824 5.33229 5.37025 5.47767 5.48300 5.51981 5.65401 5.68412 5.70200 5.85876 5.96465 6.03656 6.07486 6.15540 6.23855 6.30799 6.48273 6.57269 6.67793 6.73684 6.85348 7.27448 7.33915 7.44606 7.62072 7.75141 8.00573 8.40317 9.16193 9.79186 10.35490 11.25624 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021611 B = 0.002847 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.310842 B = 9832.455873 C =10327.013245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.256 5.256 7 S 0.405 5.595 8 C -0.283 4.283 9 C 0.598 3.402 10 O -0.510 6.510 11 N -0.713 5.713 12 C 0.151 3.849 13 C -0.140 4.140 14 C 0.149 3.851 15 N -0.592 5.592 16 C -0.257 4.257 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.174 3.826 25 C -0.148 4.148 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.255 0.745 40 H 0.022 0.978 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.534 7.692 13.272 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.041 4.041 5 N -0.110 5.110 6 N -0.236 5.236 7 S 0.542 5.458 8 C -0.424 4.424 9 C 0.381 3.619 10 O -0.387 6.387 11 N -0.363 5.363 12 C 0.048 3.952 13 C -0.180 4.180 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.387 4.387 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.048 3.952 25 C -0.188 4.188 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.228 0.772 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.603 7.980 14.288 20.656 hybrid contribution 0.935 -0.171 -0.801 1.243 sum -11.668 7.809 13.487 19.468 Atomic orbital electron populations 1.21800 0.93182 1.02214 1.02665 1.20192 0.96625 0.96210 0.92154 1.21803 1.01284 0.94184 1.02658 1.22958 0.94472 0.92472 0.94158 1.70532 1.19977 1.24243 0.96218 1.78917 1.13255 1.07178 1.24290 1.82554 1.39863 1.28593 0.94798 1.27941 1.10165 1.04213 1.00037 1.16467 0.78808 0.80462 0.86181 1.90789 1.58450 1.66156 1.23273 1.46282 1.50544 1.28359 1.11067 1.21200 0.96575 0.91075 0.86304 1.22371 1.00342 0.94058 1.01266 1.20827 0.90508 0.94680 0.91802 1.44088 1.08543 1.05088 1.73772 1.19123 0.94538 1.13440 1.11588 0.91661 1.25063 0.99318 1.00135 0.94956 1.70017 1.34312 1.37659 1.12468 0.86368 0.85030 0.78300 0.77024 1.20862 1.21608 1.21024 1.20758 1.00960 0.83013 0.90503 1.22600 0.95446 0.99275 1.01510 0.91937 0.91334 0.92650 0.85776 0.92556 0.91307 0.91948 0.77234 0.89412 0.92411 0.91654 0.92205 0.96091 0.93471 0.96000 0.89172 0.92646 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.16 37.16 0.34 -0.97 16 2 C -0.03 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -1.36 9.16 37.16 0.34 -1.02 16 4 C 0.11 1.28 5.53 -82.85 -0.46 0.83 16 5 N -0.24 -3.04 11.51 33.42 0.38 -2.66 16 6 N -0.26 -3.01 12.51 60.35 0.75 -2.26 16 7 S 0.41 3.75 23.05 -107.50 -2.48 1.28 16 8 C -0.28 -3.34 6.81 -35.95 -0.24 -3.58 16 9 C 0.60 8.24 7.77 -12.63 -0.10 8.14 16 10 O -0.51 -8.53 14.21 5.26 0.07 -8.45 16 11 N -0.71 -9.11 5.07 -54.92 -0.28 -9.39 16 12 C 0.15 2.39 2.42 -67.89 -0.16 2.23 16 13 C -0.14 -2.13 5.55 -26.61 -0.15 -2.28 16 14 C 0.15 2.89 6.51 -3.71 -0.02 2.86 16 15 N -0.59 -14.15 3.00 -172.30 -0.52 -14.67 16 16 C -0.26 -6.81 9.58 -15.06 -0.14 -6.95 16 17 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 18 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 19 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 20 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.17 4.03 5.30 -3.70 -0.02 4.01 16 25 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.12 1.57 5.49 -51.93 -0.29 1.29 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.39 3.93 8.03 -40.82 -0.33 3.61 16 34 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -30.28 362.06 -8.52 -38.80 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.36 Total: 1.02 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.15 Total: -0.23 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.97 Total: -54.00 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.48 Total: 1.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.28 -8.52 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087442098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.861 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds