Wall clock time and date at job start Tue Mar 31 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46853 * 2 1 4 4 N 1.46502 * 109.47303 * 119.99629 * 2 1 3 5 5 C 1.34371 * 125.69230 * 275.00846 * 4 2 1 6 6 C 1.38031 * 107.53331 * 179.97438 * 5 4 2 7 7 C 1.43195 * 126.43699 * 180.02562 * 6 5 4 8 8 N 6.04832 * 106.39470 * 98.34783 * 2 1 3 9 9 C 1.41833 * 107.12296 * 359.97438 * 6 5 4 10 10 N 1.39698 * 126.05927 * 180.02562 * 9 6 5 11 11 C 1.34771 * 119.99977 * 180.02562 * 10 9 6 12 12 O 1.21603 * 119.99937 * 359.97438 * 11 10 9 13 13 C 1.47586 * 120.00093 * 180.02562 * 11 10 9 14 14 C 1.40042 * 119.89782 * 179.97438 * 13 11 10 15 15 C 1.36296 * 120.10589 * 179.73967 * 14 13 11 16 16 C 1.40907 * 119.89369 * 0.25670 * 15 14 13 17 17 C 1.41086 * 120.10088 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00375 * 25.06291 * 17 16 15 19 19 C 1.40230 * 119.99806 * 205.06444 * 17 16 15 20 20 N 1.30648 * 120.00246 * 18.03125 * 19 17 16 21 21 Si 1.86806 * 119.99950 * 198.03201 * 19 17 16 22 22 H 1.48499 * 109.46943 * 94.52583 * 21 19 17 23 23 H 1.48499 * 109.47010 * 214.52821 * 21 19 17 24 24 H 1.48504 * 109.47024 * 334.52726 * 21 19 17 25 25 C 1.40892 * 119.79509 * 359.97438 * 16 15 14 26 26 C 1.36298 * 119.89495 * 0.02562 * 25 16 15 27 27 N 1.30967 * 107.87631 * 0.26396 * 9 6 5 28 28 H 1.08997 * 109.47376 * 299.99883 * 1 2 3 29 29 H 1.09002 * 109.47055 * 60.00487 * 1 2 3 30 30 H 1.09000 * 109.46873 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47376 * 240.00117 * 2 1 3 32 32 H 1.08998 * 109.47216 * 299.99237 * 3 2 1 33 33 H 1.09004 * 109.47380 * 59.99740 * 3 2 1 34 34 H 1.09000 * 109.46975 * 179.97438 * 3 2 1 35 35 H 1.07996 * 126.23131 * 359.97121 * 5 4 2 36 36 H 0.97006 * 120.00168 * 359.97438 * 10 9 6 37 37 H 1.07995 * 119.94754 * 0.02562 * 14 13 11 38 38 H 1.07997 * 120.05522 * 180.27557 * 15 14 13 39 39 H 0.96998 * 120.00057 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.05511 * 180.02562 * 25 16 15 41 41 H 1.08009 * 119.94944 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1899 -0.1344 2.4074 6 6 2.6620 -1.1176 3.2533 7 6 2.9821 -0.9643 4.6406 8 7 3.2372 -0.8424 5.7409 9 6 2.7693 -2.3086 2.4906 10 7 3.2088 -3.5488 2.9599 11 6 3.2631 -4.6048 2.1243 12 8 2.9291 -4.4781 0.9619 13 6 3.7270 -5.9152 2.6202 14 6 3.7820 -7.0111 1.7501 15 6 4.2148 -8.2219 2.2022 16 6 4.6019 -8.3712 3.5488 17 6 5.0510 -9.6224 4.0214 18 1 5.4821 -10.3360 3.3348 19 6 4.9377 -9.9396 5.3826 20 7 4.1218 -9.2620 6.1455 21 14 5.9534 -11.3309 6.1052 22 1 7.2018 -10.7799 6.6910 23 1 5.1705 -12.0171 7.1641 24 1 6.2955 -12.3018 5.0348 25 6 4.5402 -7.2669 4.4216 26 6 4.1061 -6.0600 3.9604 27 7 2.3881 -2.0382 1.2672 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.9941 0.8945 2.6708 36 1 3.4757 -3.6498 3.8870 37 1 3.4856 -6.8956 0.7181 38 1 4.2611 -9.0655 1.5294 39 1 4.0437 -9.4812 7.0872 40 1 4.8363 -7.3766 5.4545 41 1 4.0589 -5.2127 4.6286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089999428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:19 Heat of formation + Delta-G solvation = 87.866220 kcal Electronic energy + Delta-G solvation = -25483.054705 eV Core-core repulsion = 21750.520285 eV Total energy + Delta-G solvation = -3732.534420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57789 -39.19071 -37.27602 -36.61468 -35.80926 -34.02733 -33.89942 -30.63156 -30.46905 -29.52290 -29.31861 -27.74118 -26.08622 -24.12157 -22.94514 -21.34524 -20.86688 -20.72023 -19.16195 -18.93522 -17.57729 -16.93163 -16.39620 -15.97590 -15.65949 -15.46523 -14.72606 -14.23956 -14.16148 -14.04373 -13.97919 -13.59024 -13.25830 -13.11712 -12.95782 -12.85366 -12.73996 -12.64327 -12.29507 -12.16754 -12.00088 -11.82553 -11.54449 -11.43873 -11.33153 -11.01690 -10.79893 -10.64858 -10.56955 -10.08056 -9.61061 -9.41077 -9.08684 -8.91340 -8.25415 -7.78095 -7.60514 -7.08986 -4.65752 1.36033 1.95223 2.06319 2.44008 2.71246 2.90336 2.94401 2.96870 2.99601 3.32594 3.53916 3.71039 3.89161 4.06439 4.29991 4.41865 4.47202 4.51855 4.67363 4.98064 5.03641 5.18477 5.22598 5.32352 5.41829 5.51185 5.59759 5.64751 5.77322 5.96345 5.98478 6.25991 6.69687 6.72225 6.76832 6.83748 7.00172 7.06848 7.27159 7.39542 7.61616 7.64512 7.74496 7.80771 8.01218 8.10100 8.34247 8.57294 8.69146 8.87457 9.83024 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.002550 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.516773 B =10976.907984 C =11981.537302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 C -0.167 4.167 4 N -0.348 5.348 5 C 0.133 3.867 6 C -0.216 4.216 7 C 0.292 3.708 8 N -0.436 5.436 9 C 0.356 3.644 10 N -0.645 5.645 11 C 0.566 3.434 12 O -0.522 6.522 13 C -0.286 4.286 14 C -0.016 4.016 15 C -0.238 4.238 16 C 0.130 3.870 17 C -0.438 4.438 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.767 5.767 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.176 4.176 26 C -0.062 4.062 27 N -0.272 5.272 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.186 0.814 36 H 0.418 0.582 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.288 0.712 40 H 0.121 0.879 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 17.156 -6.428 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.225 4.225 4 N -0.126 5.126 5 C -0.023 4.023 6 C -0.235 4.235 7 C -0.023 4.023 8 N -0.114 5.114 9 C 0.096 3.904 10 N -0.296 5.296 11 C 0.362 3.638 12 O -0.397 6.397 13 C -0.291 4.291 14 C -0.035 4.035 15 C -0.258 4.258 16 C 0.127 3.873 17 C -0.465 4.465 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.390 5.390 21 Si 0.738 3.262 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.195 4.195 26 C -0.081 4.081 27 N -0.100 5.100 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.203 0.797 36 H 0.256 0.744 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.624 16.905 -6.655 18.747 hybrid contribution 0.459 -0.339 1.426 1.536 sum -4.165 16.565 -5.229 17.864 Atomic orbital electron populations 1.22260 0.93169 1.03893 1.03112 1.21405 0.95084 0.92538 0.85689 1.22252 1.02651 0.93770 1.03861 1.48681 1.48190 1.07654 1.08066 1.22650 0.95988 0.98705 0.84929 1.15721 1.25078 0.94215 0.88490 1.24456 0.92507 0.94062 0.91250 1.81285 1.11605 1.07041 1.11437 1.19265 0.94661 0.86079 0.90431 1.43298 1.65764 1.05383 1.15164 1.18862 0.76487 0.83618 0.84866 1.90742 1.47991 1.83993 1.17018 1.18695 1.22679 0.92085 0.95628 1.20337 0.94252 0.91691 0.97245 1.20713 1.11330 0.96617 0.97107 1.17808 0.85730 0.92782 0.91018 1.19902 1.32982 1.00501 0.93121 0.89508 1.26138 0.93678 0.97910 0.97146 1.69740 1.25684 1.35851 1.07707 0.86175 0.80225 0.80459 0.79324 1.18921 1.19923 1.18163 1.20960 1.06437 0.91493 1.00633 1.20470 0.97714 0.96843 0.93099 1.78164 1.25043 0.90896 1.15904 0.91796 0.90258 0.91094 0.87125 0.89659 0.91402 0.91139 0.79661 0.74402 0.87895 0.88188 0.90066 0.86165 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 9.52 37.16 0.35 -0.67 16 2 C 0.15 1.12 3.91 -67.93 -0.27 0.86 16 3 C -0.17 -0.68 8.82 37.16 0.33 -0.36 16 4 N -0.35 -3.88 3.50 -54.29 -0.19 -4.07 16 5 C 0.13 1.27 10.57 -16.52 -0.17 1.10 16 6 C -0.22 -2.83 5.98 -106.68 -0.64 -3.46 16 7 C 0.29 4.05 15.62 -22.47 -0.35 3.70 16 8 N -0.44 -6.81 18.54 41.84 0.78 -6.04 16 9 C 0.36 5.87 7.81 -154.50 -1.21 4.66 16 10 N -0.65 -11.64 5.38 -11.86 -0.06 -11.70 16 11 C 0.57 12.14 7.73 -12.45 -0.10 12.04 16 12 O -0.52 -12.35 15.04 5.27 0.08 -12.27 16 13 C -0.29 -6.47 5.89 -104.73 -0.62 -7.09 16 14 C -0.02 -0.37 9.52 -39.60 -0.38 -0.75 16 15 C -0.24 -5.66 9.73 -39.27 -0.38 -6.04 16 16 C 0.13 3.26 5.57 -106.80 -0.59 2.67 16 17 C -0.44 -10.72 9.04 -37.75 -0.34 -11.06 16 18 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.69 5.13 -17.31 -0.09 1.60 16 20 N -0.77 -18.26 10.99 55.56 0.61 -17.65 16 21 Si 0.91 17.12 29.60 -169.99 -5.03 12.09 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 25 C -0.18 -4.28 8.63 -39.28 -0.34 -4.62 16 26 C -0.06 -1.37 9.47 -39.60 -0.38 -1.75 16 27 N -0.27 -4.51 10.72 31.60 0.34 -4.17 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.20 7.12 -51.93 -0.37 -0.17 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.19 0.91 7.22 -52.49 -0.38 0.53 16 36 H 0.42 6.83 6.61 -40.82 -0.27 6.56 16 37 H 0.10 2.29 7.63 -52.49 -0.40 1.88 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 40 H 0.12 2.97 6.20 -52.48 -0.33 2.65 16 41 H 0.09 1.68 6.37 -52.48 -0.33 1.34 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -31.08 362.28 -7.77 -38.86 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.59 Total: 8.66 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -5.16 Total: -9.16 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 1.47 Total: -43.63 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.08 -7.77 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089999428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.723 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds