Wall clock time and date at job start Tue Mar 31 2020 13:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47496 * 2 1 4 4 C 1.53004 * 109.46567 * 120.00090 * 2 1 3 5 5 C 1.52999 * 109.46860 * 175.00001 * 4 2 1 6 6 N 1.46498 * 109.47274 * 179.97438 * 5 4 2 7 7 C 1.46504 * 120.00050 * 269.99843 * 6 5 4 8 8 C 1.50697 * 109.47350 * 270.00156 * 7 6 5 9 9 H 1.08011 * 119.99726 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00398 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99698 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00244 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47074 * 59.99971 * 12 10 8 14 14 H 1.48494 * 109.46930 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47201 * 300.00196 * 12 10 8 16 16 C 1.34780 * 120.00227 * 89.99427 * 6 5 4 17 17 O 1.21582 * 119.99868 * 0.02562 * 16 6 5 18 18 N 1.34770 * 120.00003 * 180.27290 * 16 6 5 19 19 C 1.40003 * 119.99927 * 174.06156 * 18 16 6 20 20 C 1.38846 * 120.07452 * 335.20814 * 19 18 16 21 21 C 1.38123 * 119.94320 * 179.97438 * 20 19 18 22 22 C 1.38299 * 120.08903 * 359.97438 * 21 20 19 23 23 C 1.38254 * 120.15012 * 0.02968 * 22 21 20 24 24 C 1.38235 * 120.05450 * 359.69276 * 23 22 21 25 25 Cl 1.73602 * 120.04461 * 180.30017 * 24 23 22 26 26 H 1.09008 * 109.47295 * 300.00491 * 1 2 3 27 27 H 1.09005 * 109.46681 * 59.99699 * 1 2 3 28 28 H 1.08996 * 109.47784 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 239.99383 * 2 1 3 30 30 H 1.08999 * 109.47079 * 59.99234 * 3 2 1 31 31 H 1.08998 * 109.47217 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46749 * 299.99548 * 3 2 1 33 33 H 1.08994 * 109.47751 * 54.99903 * 4 2 1 34 34 H 1.09006 * 109.46816 * 294.99321 * 4 2 1 35 35 H 1.09005 * 109.47451 * 59.99761 * 5 4 2 36 36 H 1.08997 * 109.47105 * 299.99320 * 5 4 2 37 37 H 1.08997 * 109.46766 * 29.99663 * 7 6 5 38 38 H 1.08996 * 109.46989 * 149.99586 * 7 6 5 39 39 H 0.97002 * 119.99818 * 180.02562 * 11 10 8 40 40 H 0.97003 * 120.00275 * 354.07244 * 18 16 6 41 41 H 1.08000 * 120.02547 * 359.94977 * 20 19 18 42 42 H 1.07993 * 119.95440 * 179.97438 * 21 20 19 43 43 H 1.07998 * 119.91972 * 180.02562 * 22 21 20 44 44 H 1.08004 * 119.97484 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0530 -1.5212 2.3845 7 6 4.4015 -0.7530 3.5823 8 6 5.8554 -0.3611 3.5225 9 1 6.4596 -0.6553 2.6769 10 6 6.4146 0.3720 4.5475 11 7 5.6790 0.7297 5.5774 12 14 8.2170 0.8571 4.4736 13 1 8.4570 1.6877 3.2662 14 1 8.5701 1.6359 5.6877 15 1 9.0566 -0.3660 4.4079 16 6 4.1817 -2.8629 2.3834 17 8 3.8928 -3.5004 1.3892 18 7 4.6257 -3.4982 3.4859 19 6 4.6418 -4.8975 3.5288 20 6 3.7748 -5.6282 2.7274 21 6 3.7934 -7.0086 2.7715 22 6 4.6747 -7.6636 3.6123 23 6 5.5395 -6.9398 4.4119 24 6 5.5301 -5.5582 4.3684 25 17 6.6216 -4.6496 5.3669 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6053 -1.7198 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 3.9994 0.1674 1.1422 36 1 3.8530 -1.3942 0.3005 37 1 3.7850 0.1446 3.6303 38 1 4.2256 -1.3624 4.4687 39 1 6.0723 1.2458 6.2984 40 1 4.9340 -2.9860 4.2498 41 1 3.0862 -5.1176 2.0705 42 1 3.1188 -7.5771 2.1486 43 1 4.6871 -8.7431 3.6442 44 1 6.2263 -7.4543 5.0678 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176335582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:50 Heat of formation + Delta-G solvation = -25.266113 kcal Electronic energy + Delta-G solvation = -25597.724671 eV Core-core repulsion = 21961.391960 eV Total energy + Delta-G solvation = -3636.332712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32706 -38.58702 -36.71586 -36.14088 -34.84629 -34.30014 -32.61946 -30.51296 -29.82318 -28.52924 -27.09257 -26.83716 -23.65410 -23.15864 -22.64540 -21.76474 -19.77431 -19.23567 -17.90626 -16.97477 -16.56353 -16.27918 -15.31111 -15.11604 -14.86099 -14.66327 -14.34331 -14.06512 -13.76882 -13.70301 -13.40359 -13.19448 -12.74387 -12.49588 -12.38560 -12.07931 -11.95642 -11.71527 -11.50827 -11.39861 -11.23374 -11.18206 -10.91452 -10.84819 -10.69268 -10.61746 -10.48093 -10.27220 -10.16947 -10.11110 -9.79314 -9.37992 -8.62945 -8.58867 -7.96940 -7.54345 -6.24043 -4.32710 1.35002 1.50994 2.40635 3.20614 3.21982 3.26690 3.31022 3.58877 4.05831 4.26771 4.52225 4.96642 5.06256 5.08874 5.11023 5.13751 5.15500 5.37508 5.55235 5.61982 5.66123 5.72887 5.83056 5.89621 5.97169 6.00909 6.03295 6.10569 6.24361 6.32500 6.34789 6.38134 6.39275 6.58387 6.61989 6.65274 6.70783 6.79428 7.03887 7.22015 7.28904 7.68454 7.70787 7.96419 8.45136 8.76503 9.12353 9.36857 10.82092 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005607 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.251965 B = 4992.960529 C = 8071.526290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.136 3.864 6 N -0.605 5.605 7 C 0.238 3.762 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.069 3.931 11 N -0.889 5.889 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.708 3.292 17 O -0.601 6.601 18 N -0.677 5.677 19 C 0.199 3.801 20 C -0.128 4.128 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.090 4.090 24 C -0.083 4.083 25 Cl -0.061 7.061 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.423 0.577 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 -8.742 -4.340 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.167 4.167 5 C 0.013 3.987 6 N -0.338 5.338 7 C 0.118 3.882 8 C -0.581 4.581 9 H 0.080 0.920 10 C -0.135 4.135 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.411 3.589 17 O -0.482 6.482 18 N -0.324 5.324 19 C 0.100 3.900 20 C -0.149 4.149 21 C -0.115 4.115 22 C -0.166 4.166 23 C -0.109 4.109 24 C -0.113 4.113 25 Cl -0.032 7.032 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.264 0.736 41 H 0.174 0.826 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.052 -8.808 -4.765 11.701 hybrid contribution 1.407 0.785 0.697 1.756 sum -4.644 -8.023 -4.068 10.123 Atomic orbital electron populations 1.21821 0.95601 1.01428 1.01339 1.21039 0.95357 0.96344 0.98451 1.21908 1.01644 0.95843 1.01324 1.22021 0.96565 1.00495 0.97643 1.21286 0.92778 0.97340 0.87328 1.47461 1.65837 1.03765 1.16690 1.19381 0.96305 0.91687 0.80876 1.21461 0.95011 1.35388 1.06280 0.92022 1.24919 0.98277 0.95298 0.95004 1.69909 1.36283 1.37534 1.08943 0.86597 0.84775 0.78858 0.77586 1.20023 1.21075 1.19987 1.15782 0.78208 0.82650 0.82293 1.90768 1.58539 1.65697 1.33217 1.43029 1.66277 1.03922 1.19184 1.17451 0.93602 0.83108 0.95863 1.21512 0.99317 0.93723 1.00369 1.21109 0.98395 0.93957 0.97996 1.20951 0.97722 0.99680 0.98212 1.20782 0.99555 0.90892 0.99683 1.20733 0.96824 0.92564 1.01176 1.98393 1.62379 1.74370 1.68079 0.92815 0.93075 0.92920 0.91299 0.92605 0.92076 0.93255 0.91993 0.91807 0.90100 0.90969 0.93982 0.95326 0.92368 0.73606 0.82638 0.85623 0.85670 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.18 2.92 -90.62 -0.26 -1.44 16 3 C -0.15 -1.83 8.95 37.16 0.33 -1.50 16 4 C -0.13 -1.98 5.01 -26.73 -0.13 -2.11 16 5 C 0.14 2.45 5.16 -4.04 -0.02 2.43 16 6 N -0.61 -12.58 2.46 -180.81 -0.44 -13.02 16 7 C 0.24 5.52 4.88 -5.19 -0.03 5.49 16 8 C -0.54 -13.89 9.39 -34.44 -0.32 -14.21 16 9 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.01 13.29 55.43 0.74 -23.28 16 12 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 C 0.71 14.99 8.08 -86.92 -0.70 14.29 16 17 O -0.60 -13.16 13.09 5.29 0.07 -13.09 16 18 N -0.68 -13.56 5.02 -14.20 -0.07 -13.63 16 19 C 0.20 3.59 6.43 -83.64 -0.54 3.05 16 20 C -0.13 -2.12 8.72 -39.40 -0.34 -2.46 16 21 C -0.10 -1.26 10.04 -39.60 -0.40 -1.65 16 22 C -0.15 -1.75 10.04 -39.55 -0.40 -2.15 16 23 C -0.09 -1.20 9.82 -39.58 -0.39 -1.59 16 24 C -0.08 -1.35 6.34 -39.32 -0.25 -1.60 16 25 Cl -0.06 -1.03 27.79 -51.86 -1.44 -2.47 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.45 6.50 -51.93 -0.34 1.11 16 36 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 38 H 0.03 0.69 6.45 -51.93 -0.33 0.36 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.42 8.83 5.58 -40.82 -0.23 8.60 16 41 H 0.16 2.77 5.79 -52.49 -0.30 2.47 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -27.67 374.73 -10.28 -37.95 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.55 Total: 9.36 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -3.21 Total: -3.04 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.22 Total: -49.93 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.44 Total: -2.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.67 -10.28 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176335582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.685 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds