Wall clock time and date at job start Tue Mar 31 2020 14:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47394 * 2 1 4 4 N 1.46503 * 109.47138 * 120.00140 * 2 1 3 5 5 C 1.34367 * 125.69041 * 274.95079 * 4 2 1 6 6 C 1.38036 * 107.52512 * 180.02562 * 5 4 2 7 7 C 1.43197 * 126.43523 * 180.26227 * 6 5 4 8 8 N 6.04825 * 106.33985 * 98.36729 * 2 1 3 9 9 C 1.41815 * 107.12905 * 0.02562 * 6 5 4 10 10 N 1.39747 * 126.06138 * 180.02562 * 9 6 5 11 11 C 1.34769 * 119.99860 * 179.97438 * 10 9 6 12 12 O 1.21560 * 120.00171 * 359.97438 * 11 10 9 13 13 C 1.47855 * 119.99988 * 180.02562 * 11 10 9 14 14 C 1.39936 * 120.02643 * 359.71806 * 13 11 10 15 15 C 1.38326 * 120.35662 * 179.71635 * 14 13 11 16 16 C 1.37749 * 120.41228 * 0.56687 * 15 14 13 17 17 C 1.40753 * 120.04551 * 359.71743 * 16 15 14 18 18 C 1.41442 * 120.17855 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99868 * 334.92518 * 18 17 16 20 20 C 1.39936 * 119.99667 * 154.93101 * 18 17 16 21 21 N 1.30829 * 120.00055 * 342.57740 * 20 18 17 22 22 Si 1.86803 * 119.99828 * 162.58688 * 20 18 17 23 23 H 1.48500 * 109.46776 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47390 * 119.99475 * 22 20 18 25 25 H 1.48502 * 109.46748 * 239.99479 * 22 20 18 26 26 C 1.39014 * 120.02933 * 180.02562 * 13 11 10 27 27 N 1.30952 * 107.87563 * 359.97438 * 9 6 5 28 28 H 1.09001 * 109.47014 * 300.00305 * 1 2 3 29 29 H 1.09005 * 109.46997 * 59.99633 * 1 2 3 30 30 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47014 * 239.99695 * 2 1 3 32 32 H 1.09001 * 109.47464 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46959 * 299.99657 * 3 2 1 34 34 H 1.09001 * 109.47289 * 59.99863 * 3 2 1 35 35 H 1.08002 * 126.23563 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99833 * 359.97438 * 10 9 6 37 37 H 1.07999 * 119.81888 * 0.02562 * 14 13 11 38 38 H 1.07996 * 119.78861 * 180.26323 * 15 14 13 39 39 H 1.07998 * 119.97919 * 179.73837 * 16 15 14 40 40 H 0.97004 * 119.99998 * 180.02562 * 21 20 18 41 41 H 1.08003 * 120.19981 * 359.96935 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1908 -0.1343 2.4070 6 6 2.6636 -1.1176 3.2527 7 6 2.9804 -0.9653 4.6408 8 7 3.2315 -0.8446 5.7422 9 6 2.7713 -2.3082 2.4898 10 7 3.2117 -3.5488 2.9589 11 6 3.2654 -4.6047 2.1233 12 8 2.9303 -4.4783 0.9617 13 6 3.7309 -5.9174 2.6197 14 6 4.1214 -6.0624 3.9556 15 6 4.5524 -7.2887 4.4288 16 6 4.6133 -8.3782 3.5881 17 6 4.2303 -8.2503 2.2398 18 6 4.2912 -9.3673 1.3742 19 1 4.9748 -10.1765 1.5843 20 6 3.4658 -9.4236 0.2456 21 7 2.4183 -8.6444 0.1616 22 14 3.8597 -10.6118 -1.1411 23 1 5.0883 -11.3751 -0.8049 24 1 2.7258 -11.5532 -1.3233 25 1 4.0782 -9.8510 -2.3976 26 6 3.7870 -7.0069 1.7582 27 7 2.3838 -2.0393 1.2682 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.9952 0.8946 2.6706 36 1 3.4788 -3.6497 3.8859 37 1 4.0813 -5.2135 4.6221 38 1 4.8476 -7.3913 5.4625 39 1 4.9549 -9.3314 3.9639 40 1 1.8460 -8.6837 -0.6206 41 1 3.4908 -6.8985 0.7252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176992432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:22 Heat of formation + Delta-G solvation = 92.386761 kcal Electronic energy + Delta-G solvation = -25794.021087 eV Core-core repulsion = 22061.682693 eV Total energy + Delta-G solvation = -3732.338394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62614 -39.31123 -37.19150 -36.64470 -35.83980 -34.17387 -33.66490 -30.66820 -30.48589 -29.53240 -29.22934 -27.73210 -25.40691 -24.28063 -23.46184 -21.33825 -20.89352 -20.72884 -19.20808 -18.93899 -17.68933 -16.73479 -16.19673 -15.86525 -15.67712 -15.17561 -14.76812 -14.67670 -14.24866 -14.04925 -13.96052 -13.62821 -13.24300 -13.15580 -12.97788 -12.84576 -12.72597 -12.63877 -12.55980 -12.30742 -11.85379 -11.68815 -11.53997 -11.22988 -11.12653 -10.83400 -10.70775 -10.67394 -10.51525 -10.06373 -9.73840 -9.25858 -9.16132 -8.95497 -8.31341 -7.69512 -7.56798 -6.83425 -4.45014 1.33046 1.88568 2.02773 2.43857 2.66401 2.77723 3.06784 3.11171 3.12917 3.22708 3.49772 3.87214 3.90638 4.03462 4.27687 4.39561 4.47253 4.59661 4.67994 4.93970 5.04346 5.16562 5.22004 5.31107 5.42193 5.48229 5.55046 5.59093 5.78867 5.83310 6.02926 6.22157 6.64165 6.66871 6.77256 6.94839 6.95280 7.16129 7.24615 7.31909 7.58237 7.64767 7.72596 7.87818 7.99861 8.12583 8.45333 8.70262 8.77165 8.79276 10.11450 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.003254 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.274394 B = 8602.262850 C =10412.801844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.346 5.346 5 C 0.134 3.866 6 C -0.216 4.216 7 C 0.293 3.707 8 N -0.437 5.437 9 C 0.354 3.646 10 N -0.642 5.642 11 C 0.559 3.441 12 O -0.490 6.490 13 C -0.127 4.127 14 C -0.219 4.219 15 C -0.095 4.095 16 C -0.209 4.209 17 C 0.099 3.901 18 C -0.458 4.458 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.910 3.090 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.270 1.270 26 C -0.087 4.087 27 N -0.269 5.269 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.187 0.813 36 H 0.419 0.581 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.285 0.715 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 18.019 -1.329 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.052 3.948 3 C -0.225 4.225 4 N -0.124 5.124 5 C -0.022 4.022 6 C -0.234 4.234 7 C -0.021 4.021 8 N -0.115 5.115 9 C 0.093 3.907 10 N -0.294 5.294 11 C 0.350 3.650 12 O -0.361 6.361 13 C -0.130 4.130 14 C -0.239 4.239 15 C -0.113 4.113 16 C -0.229 4.229 17 C 0.096 3.904 18 C -0.487 4.487 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.195 1.195 26 C -0.107 4.107 27 N -0.097 5.097 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.204 0.796 36 H 0.258 0.742 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.532 17.805 -1.987 18.260 hybrid contribution 0.157 -0.252 0.356 0.464 sum -3.375 17.553 -1.630 17.949 Atomic orbital electron populations 1.22262 0.93093 1.03978 1.03128 1.21435 0.95157 0.92549 0.85656 1.22251 1.02654 0.93718 1.03886 1.48691 1.48075 1.07476 1.08161 1.22669 0.95889 0.98752 0.84868 1.15698 1.25090 0.94170 0.88465 1.24441 0.92458 0.94019 0.91226 1.81278 1.11675 1.07072 1.11427 1.19241 0.94900 0.85995 0.90562 1.43287 1.65514 1.05355 1.15216 1.19144 0.76862 0.83853 0.85130 1.90804 1.44960 1.83581 1.16721 1.19292 1.06885 0.91451 0.95373 1.20342 1.12000 0.97260 0.94307 1.20437 0.99977 0.93150 0.97721 1.21128 1.10647 0.97307 0.93776 1.17597 0.89380 0.92313 0.91085 1.19627 1.19063 1.04179 1.05800 0.89935 1.25974 0.93432 0.96164 0.99056 1.69790 1.09553 1.33094 1.28235 0.86225 0.79645 0.80210 0.80498 1.18314 1.19895 1.19528 1.21630 0.99368 0.90080 0.99603 1.78169 1.24603 0.90985 1.15979 0.91796 0.90208 0.91019 0.87030 0.91123 0.89618 0.91395 0.79565 0.74173 0.89269 0.88682 0.88444 0.90419 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.52 37.15 0.35 -0.73 16 2 C 0.15 1.16 3.91 -67.93 -0.27 0.90 16 3 C -0.17 -0.71 8.82 37.16 0.33 -0.38 16 4 N -0.35 -3.90 3.50 -54.29 -0.19 -4.09 16 5 C 0.13 1.27 10.57 -16.52 -0.17 1.09 16 6 C -0.22 -2.75 5.98 -106.68 -0.64 -3.39 16 7 C 0.29 3.91 15.62 -22.47 -0.35 3.56 16 8 N -0.44 -6.52 18.54 41.84 0.78 -5.75 16 9 C 0.35 5.79 7.81 -154.47 -1.21 4.59 16 10 N -0.64 -11.46 5.38 -11.78 -0.06 -11.52 16 11 C 0.56 12.33 7.74 -12.33 -0.10 12.23 16 12 O -0.49 -12.20 15.05 5.31 0.08 -12.12 16 13 C -0.13 -2.96 5.87 -105.04 -0.62 -3.58 16 14 C -0.22 -4.59 9.55 -38.91 -0.37 -4.97 16 15 C -0.09 -2.00 10.01 -39.73 -0.40 -2.40 16 16 C -0.21 -4.89 9.78 -38.81 -0.38 -5.27 16 17 C 0.10 2.57 5.57 -106.87 -0.59 1.98 16 18 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 19 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 20 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 21 N -0.78 -20.44 10.97 55.55 0.61 -19.83 16 22 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.09 -2.28 8.23 -38.44 -0.32 -2.59 16 27 N -0.27 -4.53 10.72 31.61 0.34 -4.19 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.20 7.12 -51.93 -0.37 -0.17 16 35 H 0.19 0.88 7.22 -52.49 -0.38 0.50 16 36 H 0.42 6.58 6.63 -40.82 -0.27 6.31 16 37 H 0.09 1.57 6.38 -52.49 -0.33 1.24 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.14 3.82 5.77 -52.48 -0.30 3.51 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -32.32 362.51 -7.76 -40.08 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.59 Total: 7.89 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -5.16 Total: -9.43 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 1.47 Total: -45.39 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.32 -7.76 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176992432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.463 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds