Wall clock time and date at job start Tue Mar 31 2020 13:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 C 1.53005 * 109.46694 * 120.00048 * 2 1 3 5 5 C 1.52997 * 109.47095 * 174.17992 * 4 2 1 6 6 H 1.09003 * 109.47131 * 55.26043 * 5 4 2 7 7 N 1.46903 * 109.47238 * 295.26285 * 5 4 2 8 8 C 1.46896 * 111.00163 * 153.12763 * 7 5 4 9 9 C 1.50697 * 109.47042 * 174.62425 * 8 7 5 10 10 O 1.21287 * 120.00263 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99883 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99792 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00094 * 359.97438 * 12 11 9 14 14 C 1.38957 * 119.99731 * 180.02562 * 12 11 9 15 15 N 1.31405 * 119.99971 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99854 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47228 * 89.99721 * 16 14 12 18 18 H 1.48499 * 109.47030 * 210.00005 * 16 14 12 19 19 H 1.48508 * 109.47075 * 330.00199 * 16 14 12 20 20 C 1.50694 * 109.47370 * 175.26354 * 5 4 2 21 21 C 1.38240 * 119.98855 * 79.72334 * 20 5 4 22 22 C 1.38215 * 120.01449 * 179.72827 * 21 20 5 23 23 C 1.38350 * 119.98592 * 0.54860 * 22 21 20 24 24 Cl 1.73608 * 120.01579 * 179.74835 * 23 22 21 25 25 C 1.38354 * 119.97697 * 359.72557 * 23 22 21 26 26 C 1.38222 * 119.98098 * 0.02562 * 25 23 22 27 27 H 1.08993 * 109.46999 * 300.00463 * 1 2 3 28 28 H 1.08998 * 109.46751 * 59.99717 * 1 2 3 29 29 H 1.08996 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46999 * 239.99537 * 2 1 3 31 31 H 1.09008 * 109.47143 * 59.99838 * 3 2 1 32 32 H 1.08999 * 109.46989 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47497 * 299.99826 * 3 2 1 34 34 H 1.09001 * 109.47260 * 54.17531 * 4 2 1 35 35 H 1.09008 * 109.46628 * 294.17906 * 4 2 1 36 36 H 1.00902 * 110.99420 * 29.17611 * 7 5 4 37 37 H 1.09004 * 109.47555 * 294.63242 * 8 7 5 38 38 H 1.09004 * 109.46517 * 54.62750 * 8 7 5 39 39 H 0.96996 * 120.00135 * 0.02562 * 11 9 8 40 40 H 0.97001 * 120.00187 * 180.02562 * 15 14 12 41 41 H 1.08000 * 119.98970 * 0.02562 * 21 20 5 42 42 H 1.08000 * 120.00790 * 180.27419 * 22 21 20 43 43 H 1.07993 * 120.01269 * 179.97438 * 25 23 22 44 44 H 1.07998 * 119.99247 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5629 -0.8493 1.1784 6 1 4.0045 0.1377 1.0402 7 7 3.9297 -1.7125 0.0477 8 6 5.2692 -1.3801 -0.4555 9 6 5.6639 -2.3675 -1.5233 10 8 4.9040 -3.2600 -1.8348 11 7 6.8614 -2.2588 -2.1322 12 6 7.2202 -3.1568 -3.1040 13 1 6.5436 -3.9515 -3.3814 14 6 8.4551 -3.0451 -3.7314 15 7 9.2786 -2.0784 -3.3935 16 14 8.9444 -4.2690 -5.0550 17 1 8.5036 -3.7666 -6.3811 18 1 10.4200 -4.4355 -5.0541 19 1 8.2983 -5.5780 -4.7820 20 6 4.0764 -1.4543 2.4595 21 6 4.0000 -2.8203 2.6577 22 6 4.4759 -3.3765 3.8301 23 6 5.0185 -2.5646 4.8102 24 17 5.6106 -3.2616 6.2858 25 6 5.0897 -1.1969 4.6136 26 6 4.6181 -0.6425 3.4386 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.5940 -1.7144 1.3030 35 1 1.7642 -0.1507 2.1362 36 1 3.2423 -1.6552 -0.6886 37 1 5.2602 -0.3744 -0.8759 38 1 5.9866 -1.4249 0.3640 39 1 7.4693 -1.5453 -1.8828 40 1 10.1405 -2.0002 -3.8317 41 1 3.5726 -3.4535 1.8943 42 1 4.4201 -4.4441 3.9830 43 1 5.5127 -0.5626 5.3784 44 1 4.6739 0.4250 3.2848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179722005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:47 Heat of formation + Delta-G solvation = -36.833815 kcal Electronic energy + Delta-G solvation = -24921.330001 eV Core-core repulsion = 21284.495676 eV Total energy + Delta-G solvation = -3636.834325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.82594 -38.28808 -37.46019 -36.39692 -34.54483 -33.78338 -31.43109 -31.12493 -30.96881 -28.56538 -27.32964 -26.11182 -24.08342 -23.60950 -22.72934 -20.86471 -19.65953 -19.24092 -17.87752 -17.16023 -16.26931 -15.92575 -15.78247 -15.14129 -14.77079 -14.50263 -14.28217 -14.20092 -13.88478 -13.61883 -13.44575 -13.42070 -13.29841 -12.83936 -12.39103 -12.28651 -12.02493 -11.91305 -11.65042 -11.59755 -11.53202 -11.39446 -11.35508 -11.03581 -10.84621 -10.77657 -10.71263 -10.53069 -10.38553 -10.20511 -9.49243 -9.01405 -8.57606 -8.44737 -8.06948 -7.94406 -6.40276 -3.80964 1.13188 1.32651 2.09339 3.18599 3.27226 3.33235 3.62027 3.92950 4.07576 4.28779 4.54030 4.75514 4.78874 4.80870 4.89229 4.99526 5.10475 5.24655 5.27598 5.33570 5.38793 5.46171 5.49556 5.56063 5.61117 5.68014 5.73951 5.77928 5.82556 5.90190 5.97840 5.99379 6.05803 6.18165 6.20723 6.23432 6.28522 6.31256 6.60138 6.83506 7.22009 7.56456 7.64634 8.07887 8.63054 9.19559 9.56289 10.07817 10.77541 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008662 B = 0.003524 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.552013 B = 7944.343436 C =10386.209177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.150 4.150 4 C -0.111 4.111 5 C 0.122 3.878 6 H 0.057 0.943 7 N -0.660 5.660 8 C 0.051 3.949 9 C 0.443 3.557 10 O -0.582 6.582 11 N -0.565 5.565 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.929 3.071 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.066 4.066 21 C -0.068 4.068 22 C -0.116 4.116 23 C -0.038 4.038 24 Cl -0.082 7.082 25 C -0.116 4.116 26 C -0.108 4.108 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.352 0.648 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 7.158 14.803 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.208 4.208 4 C -0.149 4.149 5 C 0.012 3.988 6 H 0.075 0.925 7 N -0.294 5.294 8 C -0.081 4.081 9 C 0.228 3.772 10 O -0.466 6.466 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.544 5.544 16 Si 0.756 3.244 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.067 4.067 21 C -0.087 4.087 22 C -0.134 4.134 23 C -0.064 4.064 24 Cl -0.054 7.054 25 C -0.135 4.135 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.174 0.826 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.287 6.019 15.023 20.320 hybrid contribution 0.835 0.660 -0.787 1.324 sum -11.452 6.679 14.236 19.453 Atomic orbital electron populations 1.21802 0.94954 1.01886 1.01548 1.21203 0.96055 0.96349 0.98597 1.21915 1.01177 0.95975 1.01687 1.21818 0.93528 1.01519 0.98013 1.20493 0.94978 0.94127 0.89185 0.92494 1.60027 1.03481 1.54640 1.11285 1.21703 0.91818 0.96687 0.97911 1.19782 0.83738 0.88129 0.85536 1.90517 1.52395 1.36630 1.67026 1.41865 1.15033 1.28759 1.34473 1.19695 1.01136 1.08917 1.13073 0.87950 1.25249 0.95798 0.97785 0.99082 1.69610 1.09769 1.31906 1.43072 0.85874 0.77533 0.80537 0.80444 1.20451 1.20935 1.19399 1.20005 0.97605 0.93953 0.95155 1.21114 0.97017 0.94949 0.95590 1.21130 0.99131 1.00029 0.93133 1.20930 1.02826 0.93631 0.89062 1.98355 1.87228 1.84810 1.34972 1.20916 1.01296 0.92894 0.98410 1.20967 0.98755 0.99862 0.93050 0.92855 0.92732 0.92481 0.90751 0.92709 0.92564 0.92688 0.90603 0.91177 0.82587 0.93891 0.89785 0.77531 0.91905 0.83920 0.85196 0.85365 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.10 -0.97 2.82 -90.61 -0.26 -1.22 16 3 C -0.15 -1.32 8.97 37.16 0.33 -0.98 16 4 C -0.11 -1.08 4.23 -26.73 -0.11 -1.19 16 5 C 0.12 1.41 2.11 -68.87 -0.15 1.27 16 6 H 0.06 0.63 5.94 -51.93 -0.31 0.32 16 7 N -0.66 -9.90 5.10 -109.22 -0.56 -10.46 16 8 C 0.05 0.89 5.93 -4.98 -0.03 0.86 16 9 C 0.44 10.33 7.83 -10.99 -0.09 10.24 16 10 O -0.58 -15.53 15.89 5.55 0.09 -15.44 16 11 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 12 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 13 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 16 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 C -0.07 -0.80 4.74 -104.62 -0.50 -1.30 16 21 C -0.07 -0.89 9.32 -39.59 -0.37 -1.26 16 22 C -0.12 -1.43 9.83 -39.55 -0.39 -1.82 16 23 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 24 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 25 C -0.12 -1.28 9.83 -39.54 -0.39 -1.67 16 26 C -0.11 -1.17 9.67 -39.58 -0.38 -1.55 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.81 6.27 -51.93 -0.33 0.48 16 31 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.52 6.49 -51.93 -0.34 0.19 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.35 5.37 6.28 -39.29 -0.25 5.13 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 39 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.14 1.99 7.72 -52.49 -0.41 1.58 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -30.25 378.49 -9.62 -39.87 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.52 Total: 13.10 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.47 Total: -8.17 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.11 Total: -48.73 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.25 -9.62 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179722005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.032 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds