Wall clock time and date at job start Tue Mar 31 2020 13:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 C 1.52994 * 109.47217 * 120.00524 * 2 1 3 5 5 C 1.53001 * 109.47352 * 66.22406 * 4 2 1 6 6 H 1.09002 * 109.47094 * 305.98998 * 5 4 2 7 7 N 1.46895 * 109.47271 * 65.99226 * 5 4 2 8 8 C 1.46903 * 111.00357 * 261.24975 * 7 5 4 9 9 C 1.50694 * 109.47153 * 175.80081 * 8 7 5 10 10 O 1.21286 * 120.00570 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99643 * 179.97438 * 9 8 7 12 12 C 1.37096 * 120.00052 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99885 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00397 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00293 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47118 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46742 * 120.00307 * 16 14 12 19 19 H 1.48498 * 109.47537 * 240.00382 * 16 14 12 20 20 C 1.50701 * 109.47262 * 185.99668 * 5 4 2 21 21 C 1.38242 * 119.98853 * 99.99740 * 20 5 4 22 22 C 1.38213 * 120.01192 * 179.97438 * 21 20 5 23 23 C 1.38359 * 119.98736 * 0.02562 * 22 21 20 24 24 Cl 1.73592 * 120.01276 * 179.97438 * 23 22 21 25 25 C 1.38347 * 119.97207 * 0.27657 * 23 22 21 26 26 C 1.38222 * 119.98658 * 359.40021 * 25 23 22 27 27 H 1.08996 * 109.47131 * 59.99532 * 1 2 3 28 28 H 1.08994 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46827 * 299.99419 * 1 2 3 30 30 H 1.09002 * 109.46827 * 240.00581 * 2 1 3 31 31 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47588 * 300.00188 * 3 2 1 33 33 H 1.09002 * 109.46883 * 60.00616 * 3 2 1 34 34 H 1.08997 * 109.47474 * 306.21996 * 4 2 1 35 35 H 1.09001 * 109.46906 * 186.22513 * 4 2 1 36 36 H 1.00900 * 110.99867 * 25.20128 * 7 5 4 37 37 H 1.09003 * 109.46518 * 295.80049 * 8 7 5 38 38 H 1.09001 * 109.46867 * 55.79642 * 8 7 5 39 39 H 0.97003 * 120.00311 * 359.97438 * 11 9 8 40 40 H 0.96991 * 120.00091 * 179.97438 * 15 14 12 41 41 H 1.07995 * 119.99143 * 0.02562 * 21 20 5 42 42 H 1.07997 * 120.00639 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00572 * 179.72644 * 25 23 22 44 44 H 1.08002 * 119.98921 * 180.32361 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6618 -2.2019 1.1733 6 1 0.5882 -2.2947 1.0090 7 7 2.3837 -2.8355 0.0619 8 6 1.5297 -2.9410 -1.1287 9 6 2.3328 -3.4992 -2.2751 10 8 3.5017 -3.7810 -2.1162 11 7 1.7521 -3.6853 -3.4770 12 6 2.4825 -4.1937 -4.5199 13 1 3.5234 -4.4446 -4.3784 14 6 1.8837 -4.3861 -5.7589 15 7 0.6173 -4.0803 -5.9312 16 14 2.8792 -5.0781 -7.1800 17 1 4.2703 -5.3376 -6.7299 18 1 2.2641 -6.3480 -7.6431 19 1 2.8944 -4.0994 -8.2967 20 6 2.0326 -2.8820 2.4660 21 6 1.0640 -3.1240 3.4221 22 6 1.4035 -3.7482 4.6076 23 6 2.7132 -4.1303 4.8375 24 17 3.1405 -4.9137 6.3266 25 6 3.6833 -3.8822 3.8829 26 6 3.3413 -3.2639 2.6949 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.5887 -0.2760 2.1357 35 1 3.1243 -0.6258 1.3065 36 1 3.2354 -2.3365 -0.1471 37 1 0.6906 -3.6035 -0.9162 38 1 1.1542 -1.9530 -1.3951 39 1 0.8171 -3.4603 -3.6040 40 1 0.1994 -4.2143 -6.7962 41 1 0.0416 -2.8261 3.2423 42 1 0.6466 -3.9376 5.3543 43 1 4.7067 -4.1763 4.0637 44 1 4.0977 -3.0749 1.9475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179722016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:50 Heat of formation + Delta-G solvation = -35.761674 kcal Electronic energy + Delta-G solvation = -24936.134220 eV Core-core repulsion = 21299.346387 eV Total energy + Delta-G solvation = -3636.787834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.90544 -38.46754 -37.45748 -36.45500 -34.38166 -33.77900 -31.58416 -31.17863 -31.04312 -28.42060 -27.31991 -26.14749 -24.26350 -23.52810 -22.67198 -20.83756 -20.01386 -19.19543 -17.92670 -17.25317 -16.24291 -16.07599 -15.68001 -15.17855 -14.69315 -14.50867 -14.24620 -14.22080 -13.80229 -13.61947 -13.56011 -13.46679 -13.34485 -12.73547 -12.39276 -12.28128 -12.12653 -11.91059 -11.70767 -11.60984 -11.55927 -11.43899 -11.34260 -11.08358 -10.90941 -10.83710 -10.62853 -10.50098 -10.35322 -10.23551 -9.53252 -9.07626 -8.60701 -8.46381 -8.06540 -7.96708 -6.43005 -3.83692 1.09229 1.26390 2.03982 3.15434 3.26248 3.33398 3.56042 3.89355 4.08254 4.29132 4.57325 4.72699 4.77306 4.81417 4.83762 5.01777 5.10816 5.18820 5.26161 5.28886 5.37157 5.42601 5.53421 5.56964 5.60011 5.66561 5.75426 5.79401 5.84196 5.86988 5.91762 5.98615 6.09494 6.15550 6.20825 6.23963 6.26761 6.32482 6.53306 6.76110 7.21402 7.54381 7.63513 8.05264 8.59627 9.16787 9.52982 10.04029 10.74769 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.002855 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.104221 B = 9804.098132 C =11274.226194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.145 4.145 4 C -0.134 4.134 5 C 0.120 3.880 6 H 0.087 0.913 7 N -0.659 5.659 8 C 0.044 3.956 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.563 5.563 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.928 3.072 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.055 4.055 21 C -0.107 4.107 22 C -0.114 4.114 23 C -0.041 4.041 24 Cl -0.082 7.082 25 C -0.113 4.113 26 C -0.077 4.077 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.352 0.648 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 7.633 19.183 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.202 4.202 4 C -0.173 4.173 5 C 0.009 3.991 6 H 0.105 0.895 7 N -0.292 5.292 8 C -0.088 4.088 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.200 5.200 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.056 4.056 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.067 4.067 24 Cl -0.054 7.054 25 C -0.132 4.132 26 C -0.095 4.095 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.172 0.828 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.296 6.714 19.433 20.600 hybrid contribution -0.227 0.516 -1.015 1.161 sum -1.523 7.230 18.418 19.845 Atomic orbital electron populations 1.21925 0.95098 1.01959 1.01782 1.21293 0.96187 0.96488 0.98654 1.21806 1.00995 0.95816 1.01583 1.22326 1.01602 0.94943 0.98385 1.20573 0.98848 0.90679 0.88962 0.89518 1.60173 1.07323 1.56295 1.05367 1.21914 0.96335 1.00203 0.90366 1.19813 0.88462 0.85267 0.83878 1.90521 1.17046 1.56079 1.83194 1.41867 1.13096 1.56410 1.08609 1.19745 0.96504 1.38302 0.88216 0.87887 1.25258 0.96014 0.97754 0.98918 1.69617 1.10868 1.48513 1.25291 0.85814 0.79815 0.78375 0.80435 1.19206 1.20737 1.20777 1.19973 0.93411 0.97235 0.94954 1.20948 0.99439 0.99122 0.93024 1.20932 0.94451 0.99697 0.98184 1.20899 0.95052 1.01799 0.88979 1.98355 1.93595 1.79603 1.33817 1.21077 0.99068 0.99804 0.93202 1.20994 0.96680 0.96380 0.95485 0.92484 0.92369 0.92757 0.90348 0.92694 0.92608 0.92917 0.91291 0.91275 0.82758 0.89753 0.92862 0.77486 0.91929 0.85410 0.85335 0.85209 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.53 37.16 0.32 -1.13 16 2 C -0.11 -1.12 2.41 -90.62 -0.22 -1.34 16 3 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.13 -1.33 3.99 -26.73 -0.11 -1.44 16 5 C 0.12 1.37 2.30 -68.87 -0.16 1.21 16 6 H 0.09 0.95 5.75 -51.93 -0.30 0.66 16 7 N -0.66 -9.88 5.03 -109.22 -0.55 -10.43 16 8 C 0.04 0.74 5.50 -4.98 -0.03 0.71 16 9 C 0.44 10.10 7.81 -10.99 -0.09 10.02 16 10 O -0.58 -15.47 15.68 5.55 0.09 -15.38 16 11 N -0.56 -14.03 5.29 -10.97 -0.06 -14.08 16 12 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 13 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 16 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.05 -0.63 4.95 -104.62 -0.52 -1.15 16 21 C -0.11 -1.10 9.67 -39.59 -0.38 -1.48 16 22 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 23 C -0.04 -0.46 6.32 -39.50 -0.25 -0.70 16 24 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 25 C -0.11 -1.29 9.83 -39.55 -0.39 -1.67 16 26 C -0.08 -0.93 9.32 -39.59 -0.37 -1.30 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.57 6.16 -51.93 -0.32 0.25 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.99 5.51 -51.93 -0.29 0.71 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.71 8.00 -51.93 -0.42 0.29 16 36 H 0.35 5.52 7.66 -39.29 -0.30 5.21 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.80 4.78 -51.93 -0.25 0.55 16 39 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.14 1.65 7.69 -52.49 -0.40 1.25 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -30.09 373.77 -9.50 -39.59 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.33 Total: 13.46 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.48 Total: -8.75 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.12 Total: -48.10 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.09 -9.50 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179722016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.828 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds