Wall clock time and date at job start Tue Mar 31 2020 13:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 C 1.52994 * 109.47217 * 120.00524 * 2 1 3 5 5 C 1.53001 * 109.47352 * 66.22406 * 4 2 1 6 6 H 1.09002 * 109.47094 * 305.98998 * 5 4 2 7 7 N 1.46895 * 109.47271 * 65.99226 * 5 4 2 8 8 C 1.46903 * 111.00357 * 261.24975 * 7 5 4 9 9 C 1.50694 * 109.47153 * 175.80081 * 8 7 5 10 10 O 1.21286 * 120.00570 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99643 * 179.97438 * 9 8 7 12 12 C 1.37096 * 120.00052 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99885 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00397 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00293 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47118 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46742 * 120.00307 * 16 14 12 19 19 H 1.48498 * 109.47537 * 240.00382 * 16 14 12 20 20 C 1.50701 * 109.47262 * 185.99668 * 5 4 2 21 21 C 1.38242 * 119.98853 * 99.99740 * 20 5 4 22 22 C 1.38213 * 120.01192 * 179.97438 * 21 20 5 23 23 C 1.38359 * 119.98736 * 0.02562 * 22 21 20 24 24 Cl 1.73592 * 120.01276 * 179.97438 * 23 22 21 25 25 C 1.38347 * 119.97207 * 0.27657 * 23 22 21 26 26 C 1.38222 * 119.98658 * 359.40021 * 25 23 22 27 27 H 1.08996 * 109.47131 * 59.99532 * 1 2 3 28 28 H 1.08994 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46827 * 299.99419 * 1 2 3 30 30 H 1.09002 * 109.46827 * 240.00581 * 2 1 3 31 31 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47588 * 300.00188 * 3 2 1 33 33 H 1.09002 * 109.46883 * 60.00616 * 3 2 1 34 34 H 1.08997 * 109.47474 * 306.21996 * 4 2 1 35 35 H 1.09001 * 109.46906 * 186.22513 * 4 2 1 36 36 H 1.00900 * 110.99867 * 25.20128 * 7 5 4 37 37 H 1.09003 * 109.46518 * 295.80049 * 8 7 5 38 38 H 1.09001 * 109.46867 * 55.79642 * 8 7 5 39 39 H 0.97003 * 120.00311 * 359.97438 * 11 9 8 40 40 H 0.96991 * 120.00091 * 179.97438 * 15 14 12 41 41 H 1.07995 * 119.99143 * 0.02562 * 21 20 5 42 42 H 1.07997 * 120.00639 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00572 * 179.72644 * 25 23 22 44 44 H 1.08002 * 119.98921 * 180.32361 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6618 -2.2019 1.1733 6 1 0.5882 -2.2947 1.0090 7 7 2.3837 -2.8355 0.0619 8 6 1.5297 -2.9410 -1.1287 9 6 2.3328 -3.4992 -2.2751 10 8 3.5017 -3.7810 -2.1162 11 7 1.7521 -3.6853 -3.4770 12 6 2.4825 -4.1937 -4.5199 13 1 3.5234 -4.4446 -4.3784 14 6 1.8837 -4.3861 -5.7589 15 7 0.6173 -4.0803 -5.9312 16 14 2.8792 -5.0781 -7.1800 17 1 4.2703 -5.3376 -6.7299 18 1 2.2641 -6.3480 -7.6431 19 1 2.8944 -4.0994 -8.2967 20 6 2.0326 -2.8820 2.4660 21 6 1.0640 -3.1240 3.4221 22 6 1.4035 -3.7482 4.6076 23 6 2.7132 -4.1303 4.8375 24 17 3.1405 -4.9137 6.3266 25 6 3.6833 -3.8822 3.8829 26 6 3.3413 -3.2639 2.6949 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.5887 -0.2760 2.1357 35 1 3.1243 -0.6258 1.3065 36 1 3.2354 -2.3365 -0.1471 37 1 0.6906 -3.6035 -0.9162 38 1 1.1542 -1.9530 -1.3951 39 1 0.8171 -3.4603 -3.6040 40 1 0.1994 -4.2143 -6.7962 41 1 0.0416 -2.8261 3.2423 42 1 0.6466 -3.9376 5.3543 43 1 4.7067 -4.1763 4.0637 44 1 4.0977 -3.0749 1.9475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179722016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:49 Heat of formation + Delta-G solvation = -53.021592 kcal Electronic energy + Delta-G solvation = -24936.882666 eV Core-core repulsion = 21299.346387 eV Total energy + Delta-G solvation = -3637.536280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87960 -40.00721 -38.60403 -37.28984 -36.02888 -35.13493 -33.29662 -32.49414 -31.93317 -29.41958 -28.08342 -27.67166 -25.78067 -24.55047 -23.57354 -21.70843 -21.23438 -20.64583 -19.89796 -18.23010 -17.60941 -17.29389 -16.66715 -16.57549 -16.08888 -15.84749 -15.62921 -15.28754 -15.08213 -14.83183 -14.54252 -14.32554 -14.30203 -13.99674 -13.57460 -13.46513 -13.21219 -13.16351 -12.98204 -12.83880 -12.69941 -12.42421 -12.39673 -12.33327 -12.22799 -12.11590 -11.72590 -11.65333 -11.51583 -11.45191 -11.36311 -10.32878 -10.00626 -9.91233 -9.46960 -9.24772 -8.46348 -5.94620 0.23267 0.42777 1.20623 1.36312 1.41822 1.55669 2.06190 2.29132 2.68253 2.98846 3.21242 3.51897 3.71443 3.87883 3.97737 4.00819 4.04488 4.18647 4.28125 4.34781 4.45734 4.50609 4.55587 4.61571 4.64420 4.78493 4.79540 4.82969 4.87758 5.01834 5.07354 5.09044 5.10568 5.31171 5.33539 5.37154 5.41795 5.46072 5.50031 5.61316 5.91544 5.95122 6.15855 6.41594 6.60713 7.13523 7.57207 8.12388 8.71250 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.002855 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.104221 B = 9804.098132 C =11274.226194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.143 4.143 4 C -0.124 4.124 5 C 0.125 3.875 6 H 0.099 0.901 7 N -0.670 5.670 8 C 0.062 3.938 9 C 0.438 3.562 10 O -0.623 6.623 11 N -0.573 5.573 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.990 3.010 17 H -0.274 1.274 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.065 4.065 21 C -0.104 4.104 22 C -0.114 4.114 23 C -0.050 4.050 24 Cl -0.078 7.078 25 C -0.122 4.122 26 C -0.092 4.092 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.345 0.655 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.135 0.865 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 8.179 20.136 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.201 4.201 4 C -0.163 4.163 5 C 0.016 3.984 6 H 0.116 0.884 7 N -0.303 5.303 8 C -0.070 4.070 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.210 5.210 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.814 3.186 17 H -0.199 1.199 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.065 4.065 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.077 4.077 24 Cl -0.049 7.049 25 C -0.141 4.141 26 C -0.111 4.111 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.153 0.847 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.774 7.271 20.403 21.837 hybrid contribution 0.243 0.353 -1.222 1.295 sum -2.531 7.624 19.181 20.795 Atomic orbital electron populations 1.21922 0.94148 1.02134 1.02452 1.21254 0.96951 0.96735 0.97606 1.21792 1.00734 0.95345 1.02197 1.22230 1.01373 0.93868 0.98831 1.20609 0.98944 0.91313 0.87539 0.88350 1.60169 1.07278 1.57450 1.05366 1.21761 0.95594 1.01059 0.88633 1.20894 0.88384 0.83559 0.84581 1.90491 1.19144 1.57349 1.83985 1.41930 1.13167 1.56988 1.08958 1.19673 0.96013 1.40445 0.89946 0.90438 1.26004 0.97053 0.97503 1.00655 1.69671 1.11692 1.48541 1.26171 0.84907 0.78027 0.78155 0.77484 1.19857 1.19690 1.19557 1.20038 0.93504 0.97715 0.95290 1.21214 1.00263 0.98322 0.92442 1.21216 0.94475 0.98911 0.98629 1.21055 0.95519 1.01989 0.89126 1.98354 1.93639 1.79519 1.33437 1.21179 0.99674 0.99961 0.93237 1.21004 0.97023 0.97360 0.95689 0.92904 0.92399 0.91067 0.93017 0.93166 0.92866 0.91414 0.89518 0.91878 0.83513 0.88295 0.90679 0.77004 0.91331 0.82887 0.83307 0.84671 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.53 71.98 0.61 -1.90 16 2 C -0.11 -2.07 2.41 -10.80 -0.03 -2.10 16 3 C -0.14 -2.53 9.19 71.98 0.66 -1.86 16 4 C -0.12 -2.26 3.99 30.59 0.12 -2.14 16 5 C 0.13 2.67 2.30 44.17 0.10 2.77 16 6 H 0.10 1.88 5.75 -2.39 -0.01 1.87 16 7 N -0.67 -19.86 5.03 -499.47 -2.51 -22.37 16 8 C 0.06 2.02 5.50 85.55 0.47 2.49 16 9 C 0.44 20.50 7.81 87.65 0.68 21.18 16 10 O -0.62 -34.10 15.68 -3.05 -0.05 -34.15 16 11 N -0.57 -29.13 5.29 -306.99 -1.62 -30.75 16 12 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 13 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 14 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 15 N -0.92 -49.33 13.05 21.66 0.28 -49.04 16 16 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 C -0.06 -1.39 4.95 -19.86 -0.10 -1.49 16 21 C -0.10 -1.87 9.67 22.26 0.22 -1.65 16 22 C -0.11 -2.07 9.83 22.29 0.22 -1.85 16 23 C -0.05 -1.05 6.32 22.32 0.14 -0.91 16 24 Cl -0.08 -1.53 28.96 -2.72 -0.08 -1.61 16 25 C -0.12 -2.72 9.83 22.29 0.22 -2.50 16 26 C -0.09 -2.19 9.32 22.27 0.21 -1.99 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.97 6.16 -2.39 -0.01 0.96 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.28 5.51 -2.39 -0.01 1.27 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.24 8.00 -2.39 -0.02 1.22 16 36 H 0.34 11.04 7.66 -89.69 -0.69 10.35 16 37 H 0.10 3.00 8.14 -2.39 -0.02 2.99 16 38 H 0.08 2.17 4.78 -2.39 -0.01 2.16 16 39 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 40 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 41 H 0.15 1.93 8.04 -2.91 -0.02 1.91 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 44 H 0.12 3.15 7.69 -2.91 -0.02 3.13 16 Total: -1.00 -65.22 373.77 2.47 -62.75 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.39 Total: 40.32 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 4.81 Total: -10.09 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -3.85 Total: -102.17 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.05 Total: -34.15 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -65.22 2.47 -62.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179722016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.730 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds