Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47124 * 2 1 4 4 H 1.09007 * 109.47063 * 305.08153 * 3 2 1 5 5 C 1.50699 * 109.47380 * 185.08469 * 3 2 1 6 6 H 1.07999 * 119.99911 * 239.99978 * 5 3 2 7 7 C 1.37881 * 119.99960 * 59.99254 * 5 3 2 8 8 N 1.31513 * 120.00066 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99751 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46926 * 60.00616 * 9 7 5 11 11 H 1.48498 * 109.47031 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47342 * 300.00346 * 9 7 5 13 13 N 1.46900 * 109.47581 * 65.07979 * 3 2 1 14 14 C 1.46897 * 111.00558 * 210.94675 * 13 3 2 15 15 H 1.08999 * 109.46871 * 322.14211 * 14 13 3 16 16 C 1.53001 * 109.47148 * 82.14109 * 14 13 3 17 17 C 1.52998 * 109.47363 * 202.14302 * 14 13 3 18 18 C 1.50703 * 109.46906 * 64.99779 * 17 14 13 19 19 O 1.21288 * 120.00458 * 359.97438 * 18 17 14 20 20 N 1.34776 * 119.99922 * 180.02562 * 18 17 14 21 21 C 1.39928 * 120.00264 * 185.12559 * 20 18 17 22 22 C 1.38895 * 120.06337 * 213.04741 * 21 20 18 23 23 C 1.38104 * 119.95323 * 179.76247 * 22 21 20 24 24 C 1.38276 * 120.08256 * 0.49656 * 23 22 21 25 25 C 1.38379 * 120.13111 * 359.77711 * 24 23 22 26 26 Cl 1.73597 * 119.98285 * 179.97438 * 25 24 23 27 27 C 1.38254 * 120.04193 * 359.96410 * 25 24 23 28 28 H 1.09001 * 109.47080 * 64.05676 * 1 2 3 29 29 H 1.09004 * 109.47039 * 184.05096 * 1 2 3 30 30 H 1.08996 * 109.47895 * 304.05446 * 1 2 3 31 31 H 1.09004 * 109.47356 * 239.99486 * 2 1 3 32 32 H 1.08998 * 109.47007 * 119.99627 * 2 1 3 33 33 H 0.97001 * 119.99983 * 179.97438 * 8 7 5 34 34 H 1.00902 * 110.99351 * 334.90249 * 13 3 2 35 35 H 1.09002 * 109.47158 * 295.04272 * 16 14 13 36 36 H 1.08998 * 109.46918 * 175.04696 * 16 14 13 37 37 H 1.08994 * 109.47118 * 55.04597 * 16 14 13 38 38 H 1.08998 * 109.47104 * 184.99861 * 17 14 13 39 39 H 1.08995 * 109.46861 * 304.99996 * 17 14 13 40 40 H 0.97003 * 119.99857 * 5.12240 * 20 18 17 41 41 H 1.08002 * 120.02054 * 0.02562 * 22 21 20 42 42 H 1.08000 * 119.95576 * 180.23216 * 23 22 21 43 43 H 1.08000 * 119.93808 * 179.76459 * 24 23 22 44 44 H 1.07999 * 120.04198 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9819 -0.8410 5 6 3.5417 1.4444 -0.1259 6 1 4.1480 1.8886 0.6496 7 6 4.1416 0.8789 -1.2311 8 7 3.4032 0.3383 -2.1757 9 14 6.0030 0.8807 -1.3868 10 1 6.5963 0.1453 -0.2411 11 1 6.3942 0.2168 -2.6562 12 1 6.4985 2.2806 -1.3865 13 7 1.6530 2.0988 1.2560 14 6 1.4368 3.5375 1.0535 15 1 2.1737 3.9198 0.3471 16 6 0.0301 3.7686 0.4978 17 6 1.5838 4.2685 2.3895 18 6 3.0044 4.1435 2.8767 19 8 3.8190 3.5298 2.2202 20 7 3.3696 4.7129 4.0424 21 6 4.7101 4.6895 4.4429 22 6 5.0321 4.6105 5.7917 23 6 6.3559 4.5827 6.1841 24 6 7.3612 4.6436 5.2365 25 6 7.0443 4.7281 3.8922 26 17 8.3094 4.8051 2.7059 27 6 5.7208 4.7510 3.4931 28 1 -0.3633 0.4496 -0.9241 29 1 -0.3633 -1.0251 0.0726 30 1 -0.3635 0.5754 0.8513 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8252 -0.0592 -2.9534 34 1 0.8351 1.6627 1.6547 35 1 -0.0468 3.3224 -0.4937 36 1 -0.1625 4.8393 0.4303 37 1 -0.7026 3.3087 1.1610 38 1 1.3366 5.3217 2.2565 39 1 0.9084 3.8263 3.1217 40 1 2.7031 5.1389 4.6038 41 1 4.2477 4.5667 6.5328 42 1 6.6063 4.5175 7.2326 43 1 8.3956 4.6255 5.5463 44 1 5.4735 4.8164 2.4438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184080971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -18.530810 kcal Electronic energy + Delta-G solvation = -25677.374010 eV Core-core repulsion = 22041.333363 eV Total energy + Delta-G solvation = -3636.040647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34625 -38.53985 -36.83933 -36.32681 -34.41710 -33.65365 -31.49796 -30.76450 -30.08226 -28.82872 -27.36975 -25.91865 -23.26008 -22.73527 -22.47216 -20.72852 -19.72108 -19.47332 -17.90010 -16.73227 -16.24127 -15.99427 -15.57686 -15.01036 -14.85022 -14.46899 -14.17502 -13.93904 -13.60088 -13.42871 -13.25039 -12.96916 -12.87528 -12.36686 -11.99114 -11.95570 -11.81916 -11.64946 -11.56659 -11.42026 -11.21905 -10.88897 -10.87548 -10.66049 -10.51001 -10.34329 -10.15206 -9.75098 -9.56893 -9.46451 -9.31056 -8.87022 -8.74610 -8.13722 -8.08825 -7.04352 -5.75672 -3.74883 1.11803 1.27877 2.19068 3.02645 3.19732 3.51228 3.52254 3.60751 3.71120 4.65436 4.75823 4.96426 5.01266 5.07299 5.16256 5.27436 5.40176 5.40878 5.53415 5.67518 5.76672 5.80422 5.86364 5.88451 6.15809 6.20288 6.21549 6.24229 6.27977 6.31079 6.39586 6.43822 6.55877 6.71493 6.89650 6.95200 7.17457 7.29340 7.54343 7.61959 7.91147 8.18873 8.46188 8.56950 8.59907 8.94634 9.45951 9.89265 11.30522 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.004660 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.183350 B = 6006.953465 C = 7969.260453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.475 4.475 6 H 0.080 0.920 7 C 0.048 3.952 8 N -0.907 5.907 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.670 5.670 14 C 0.101 3.899 15 H 0.089 0.911 16 C -0.179 4.179 17 C -0.122 4.122 18 C 0.502 3.498 19 O -0.452 6.452 20 N -0.690 5.690 21 C 0.178 3.822 22 C -0.153 4.153 23 C -0.089 4.089 24 C -0.138 4.138 25 C -0.012 4.012 26 Cl -0.069 7.069 27 C -0.116 4.116 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.255 0.745 34 H 0.311 0.689 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.406 0.594 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 11.814 15.925 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.117 3.883 4 H 0.020 0.980 5 C -0.514 4.514 6 H 0.098 0.902 7 C -0.150 4.150 8 N -0.549 5.549 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.205 1.205 13 N -0.300 5.300 14 C -0.011 4.011 15 H 0.107 0.893 16 C -0.238 4.238 17 C -0.163 4.163 18 C 0.289 3.711 19 O -0.319 6.319 20 N -0.337 5.337 21 C 0.082 3.918 22 C -0.173 4.173 23 C -0.108 4.108 24 C -0.158 4.158 25 C -0.039 4.039 26 Cl -0.040 7.040 27 C -0.137 4.137 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.241 0.759 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.308 11.317 15.261 19.002 hybrid contribution -0.165 0.069 -0.414 0.451 sum -0.473 11.386 14.847 18.717 Atomic orbital electron populations 1.21884 0.99820 0.99254 0.99597 1.21827 0.90973 1.00955 1.03011 1.19102 0.95630 0.89341 0.84241 0.97994 1.21512 0.91363 1.34249 1.04313 0.90158 1.24946 0.97593 0.96291 0.96158 1.69871 1.34440 1.40709 1.09876 0.86684 0.86689 0.78119 0.76618 1.20541 1.21939 1.20472 1.60772 1.37939 0.99964 1.31325 1.21231 0.95013 0.91417 0.93437 0.89279 1.22542 0.98367 1.00954 1.01967 1.21739 0.92807 1.01613 1.00177 1.21008 0.91752 0.78318 0.80035 1.90905 1.52301 1.34978 1.53760 1.43870 1.06584 1.59114 1.24133 1.17571 0.84400 0.97526 0.92326 1.20959 0.97222 1.04947 0.94219 1.20814 0.91705 0.99033 0.99262 1.20954 1.00300 1.03729 0.90795 1.20744 0.89406 1.03664 0.90069 1.98379 1.51290 1.96643 1.57694 1.21113 0.89864 1.01151 1.01534 0.93985 0.94671 0.94725 0.88249 0.94334 0.93522 0.87133 0.92076 0.93182 0.93282 0.89610 0.89509 0.75901 0.85380 0.85054 0.85220 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.81 37.16 0.36 -2.50 16 2 C -0.13 -3.09 5.32 -26.73 -0.14 -3.23 16 3 C 0.22 5.58 1.80 -68.87 -0.12 5.45 16 4 H 0.00 0.07 6.96 -51.92 -0.36 -0.29 16 5 C -0.48 -13.62 8.78 -34.44 -0.30 -13.93 16 6 H 0.08 2.42 5.99 -52.49 -0.31 2.11 16 7 C 0.05 1.41 5.29 -17.82 -0.09 1.32 16 8 N -0.91 -26.84 11.29 55.43 0.63 -26.21 16 9 Si 0.89 23.36 29.54 -169.99 -5.02 18.34 16 10 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 13 N -0.67 -13.72 5.19 -100.96 -0.52 -14.24 16 14 C 0.10 1.74 1.97 -67.71 -0.13 1.61 16 15 H 0.09 1.86 7.68 -51.93 -0.40 1.46 16 16 C -0.18 -2.61 9.15 37.16 0.34 -2.27 16 17 C -0.12 -1.59 5.38 -27.88 -0.15 -1.74 16 18 C 0.50 7.83 7.43 -10.98 -0.08 7.75 16 19 O -0.45 -9.56 11.29 5.55 0.06 -9.50 16 20 N -0.69 -8.23 5.34 -9.87 -0.05 -8.28 16 21 C 0.18 2.37 6.28 -83.70 -0.53 1.84 16 22 C -0.15 -1.62 9.96 -39.39 -0.39 -2.02 16 23 C -0.09 -0.90 10.04 -39.62 -0.40 -1.30 16 24 C -0.14 -1.62 9.83 -39.52 -0.39 -2.01 16 25 C -0.01 -0.17 6.32 -39.52 -0.25 -0.42 16 26 Cl -0.07 -1.02 28.95 -51.86 -1.50 -2.52 16 27 C -0.12 -1.82 8.44 -39.36 -0.33 -2.15 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.59 6.38 -51.93 -0.33 0.26 16 31 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.31 5.83 6.16 -39.29 -0.24 5.59 16 35 H 0.06 1.02 7.38 -51.93 -0.38 0.64 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 3.16 8.82 -40.82 -0.36 2.80 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.15 2.70 6.41 -52.49 -0.34 2.36 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -33.01 369.83 -9.84 -42.85 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.39 Total: 7.57 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.61 Total: -13.58 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.05 Total: -48.74 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.06 Total: -9.50 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.01 -9.84 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184080971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.323 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds