Wall clock time and date at job start Tue Mar 31 2020 13:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.53002 * 109.46957 * 240.00225 * 2 1 3 5 5 C 1.50704 * 109.47300 * 120.00702 * 2 1 3 6 6 N 1.29517 * 126.14546 * 59.96881 * 5 2 1 7 7 N 1.26249 * 116.57896 * 180.02562 * 6 5 2 8 8 C 1.29893 * 117.66245 * 0.02562 * 7 6 5 9 9 N 1.39075 * 125.65684 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99519 * 0.02562 * 9 8 7 11 11 O 1.21276 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.50705 * 119.99612 * 180.02562 * 10 9 8 13 13 N 1.46495 * 109.46958 * 180.02562 * 12 10 9 14 14 C 1.36944 * 119.99648 * 269.99412 * 13 12 10 15 15 H 1.08003 * 120.00136 * 192.62713 * 14 13 12 16 16 C 1.38810 * 119.99867 * 12.63826 * 14 13 12 17 17 N 1.31622 * 120.00055 * 25.30407 * 16 14 13 18 18 Si 1.86802 * 119.99967 * 205.30322 * 16 14 13 19 19 H 1.48497 * 109.46975 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46934 * 119.99713 * 18 16 14 21 21 H 1.48497 * 109.47483 * 239.99815 * 18 16 14 22 22 C 1.46498 * 120.00669 * 89.99768 * 13 12 10 23 23 C 1.52997 * 117.50084 * 194.11646 * 22 13 12 24 24 C 1.52997 * 117.49939 * 125.45302 * 22 13 12 25 25 S 1.71316 * 108.68914 * 0.23905 * 8 7 6 26 26 H 1.08998 * 109.46725 * 299.99645 * 1 2 3 27 27 H 1.08992 * 109.46939 * 59.99601 * 1 2 3 28 28 H 1.08999 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47145 * 300.00522 * 3 2 1 31 31 H 1.09001 * 109.46640 * 60.00043 * 3 2 1 32 32 H 1.09004 * 109.46996 * 300.00206 * 4 2 1 33 33 H 1.08995 * 109.46951 * 59.99818 * 4 2 1 34 34 H 1.08994 * 109.47273 * 180.02562 * 4 2 1 35 35 H 0.97001 * 119.99864 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47173 * 59.99596 * 12 10 9 37 37 H 1.08999 * 109.46833 * 299.99906 * 12 10 9 38 38 H 0.97004 * 119.99585 * 175.05803 * 17 16 14 39 39 H 1.08998 * 115.54672 * 339.79339 * 22 13 12 40 40 H 1.08994 * 117.50278 * 359.97438 * 23 22 13 41 41 H 1.09001 * 117.50028 * 145.02213 * 23 22 13 42 42 H 1.08997 * 117.50110 * 214.98445 * 24 22 13 43 43 H 1.08996 * 117.50047 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7106 1.2304 6 7 1.7936 -1.9421 1.5524 7 7 2.3072 -2.3542 2.6295 8 6 3.0235 -1.5154 3.3156 9 7 3.6625 -1.7907 4.5198 10 6 3.5652 -3.0175 5.0692 11 8 2.9208 -3.8815 4.5134 12 6 4.2572 -3.3156 6.3744 13 7 4.0006 -4.7064 6.7566 14 6 2.9114 -5.0148 7.5273 15 1 2.8286 -5.9925 7.9786 16 6 1.9137 -4.0709 7.7282 17 7 1.7258 -3.1136 6.8446 18 14 0.8376 -4.1593 9.2526 19 1 1.2493 -5.3199 10.0824 20 1 0.9909 -2.9094 10.0398 21 1 -0.5822 -4.3183 8.8478 22 6 4.9091 -5.7672 6.3145 23 6 4.4280 -7.2129 6.4537 24 6 5.5130 -6.6735 7.3892 25 16 3.0444 -0.0118 2.4950 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 4.1783 -1.0997 4.9642 36 1 3.8759 -2.6494 7.1482 37 1 5.3303 -3.1627 6.2598 38 1 0.9839 -2.4972 6.9478 39 1 5.5313 -5.5245 5.4531 40 1 3.4357 -7.3748 6.8746 41 1 4.7339 -7.9215 5.6840 42 1 6.5322 -7.0274 7.2345 43 1 5.2346 -6.4802 8.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268928492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:16 Heat of formation + Delta-G solvation = 90.127772 kcal Electronic energy + Delta-G solvation = -25548.095450 eV Core-core repulsion = 21951.103050 eV Total energy + Delta-G solvation = -3596.992400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76843 -38.73757 -37.18271 -36.73986 -34.14433 -33.40653 -30.68825 -29.57884 -27.55846 -27.35762 -27.11883 -25.47945 -23.90887 -22.09180 -21.46210 -20.30566 -19.89827 -19.25007 -17.97073 -17.04780 -16.24313 -15.88410 -15.75615 -15.46162 -14.74253 -14.42487 -14.22518 -13.96380 -13.93508 -13.36371 -13.13271 -12.94700 -12.49460 -12.46830 -12.40981 -11.96644 -11.80829 -11.74651 -11.37972 -11.22744 -11.12927 -10.88070 -10.79766 -10.73956 -10.43527 -10.32362 -10.05550 -9.99904 -9.89056 -9.61525 -9.45152 -9.26543 -8.66708 -8.44319 -8.01671 -6.93875 -5.97349 -3.23172 0.95262 1.01696 1.60251 3.13987 3.30432 3.40136 3.42265 3.47871 4.12260 4.24573 4.39708 4.67600 4.76978 4.82362 5.00995 5.07641 5.25147 5.35653 5.41227 5.48338 5.61307 5.63518 5.71810 5.77950 5.79947 5.88439 5.94054 5.98741 6.04305 6.06977 6.19016 6.23131 6.38071 6.41916 6.48567 6.78743 6.82713 6.90059 7.04833 7.70812 7.90786 8.15461 8.98380 9.18147 9.42105 9.67123 10.07784 11.12369 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.003476 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.211006 B = 8053.342729 C = 8767.756660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.025 3.975 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.009 4.009 6 N -0.221 5.221 7 N -0.280 5.280 8 C 0.269 3.731 9 N -0.634 5.634 10 C 0.510 3.490 11 O -0.444 6.444 12 C 0.175 3.825 13 N -0.534 5.534 14 C -0.255 4.255 15 H 0.085 0.915 16 C 0.004 3.996 17 N -0.896 5.896 18 Si 0.909 3.091 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.292 1.292 22 C 0.126 3.874 23 C -0.199 4.199 24 C -0.219 4.219 25 S 0.045 5.955 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.257 0.743 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 11.236 -10.367 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 C -0.208 4.208 4 C -0.194 4.194 5 C -0.292 4.292 6 N -0.056 5.056 7 N -0.125 5.125 8 C -0.102 4.102 9 N -0.287 5.287 10 C 0.293 3.707 11 O -0.307 6.307 12 C 0.043 3.957 13 N -0.248 5.248 14 C -0.384 4.384 15 H 0.102 0.898 16 C -0.195 4.195 17 N -0.540 5.540 18 Si 0.739 3.261 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.219 1.219 22 C 0.017 3.983 23 C -0.238 4.238 24 C -0.260 4.260 25 S 0.285 5.715 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.985 10.270 -10.513 15.519 hybrid contribution -0.681 0.355 1.036 1.289 sum 4.304 10.625 -9.477 14.874 Atomic orbital electron populations 1.21871 0.92415 1.03248 1.01969 1.19019 0.96260 0.93855 0.88842 1.22023 1.01583 0.94290 1.02879 1.21862 1.01210 1.01165 0.95163 1.29584 1.03899 0.94216 1.01524 1.71311 1.16296 1.09880 1.08100 1.71584 1.12384 1.26859 1.01668 1.26496 0.96794 0.92200 0.94689 1.44392 1.50097 1.16718 1.17477 1.23089 0.81565 0.79405 0.86649 1.90677 1.35370 1.44574 1.60063 1.20639 0.94655 0.87986 0.92439 1.43643 1.25945 0.99877 1.55348 1.19258 0.98937 0.99831 1.20330 0.89753 1.24794 0.97637 0.98573 0.98474 1.69750 1.30894 1.20890 1.32495 0.86101 0.79709 0.77481 0.82835 1.20211 1.21460 1.21865 1.20953 0.95967 0.85933 0.95462 1.23135 0.99445 0.98575 1.02596 1.23409 0.96347 1.08307 0.97904 1.84452 1.52762 1.14705 1.19581 0.92407 0.91687 0.91372 0.91923 0.91019 0.91898 0.91397 0.91688 0.92477 0.75422 0.87883 0.93158 0.93279 0.89138 0.88428 0.90508 0.90556 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.46 37.16 0.31 -1.14 16 2 C 0.03 0.28 0.99 -155.66 -0.15 0.13 16 3 C -0.15 -1.28 7.60 37.16 0.28 -1.00 16 4 C -0.14 -1.37 8.46 37.16 0.31 -1.05 16 5 C -0.01 -0.13 6.10 -13.25 -0.08 -0.21 16 6 N -0.22 -4.41 11.65 33.58 0.39 -4.02 16 7 N -0.28 -6.42 9.74 29.97 0.29 -6.12 16 8 C 0.27 5.23 8.14 -87.06 -0.71 4.52 16 9 N -0.63 -11.87 5.41 -12.91 -0.07 -11.94 16 10 C 0.51 11.72 5.75 -10.98 -0.06 11.65 16 11 O -0.44 -12.54 14.53 5.56 0.08 -12.46 16 12 C 0.17 3.75 5.48 -5.19 -0.03 3.72 16 13 N -0.53 -12.79 2.38 -167.03 -0.40 -13.19 16 14 C -0.25 -6.72 8.89 -15.06 -0.13 -6.86 16 15 H 0.08 2.23 6.28 -52.48 -0.33 1.90 16 16 C 0.00 0.10 4.83 -17.43 -0.08 0.01 16 17 N -0.90 -24.74 8.85 55.49 0.49 -24.25 16 18 Si 0.91 21.45 29.63 -169.99 -5.04 16.41 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C 0.13 2.65 6.60 -67.93 -0.45 2.21 16 23 C -0.20 -3.97 9.77 -26.69 -0.26 -4.23 16 24 C -0.22 -4.01 10.14 -26.69 -0.27 -4.28 16 25 S 0.05 0.65 21.97 -107.50 -2.36 -1.72 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.52 8.01 -51.93 -0.42 0.10 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.00 -51.93 -0.42 0.13 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 5.82 8.82 -40.82 -0.36 5.46 16 36 H 0.10 2.30 6.61 -51.93 -0.34 1.96 16 37 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 39 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.10 2.15 6.44 -51.93 -0.33 1.82 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -34.24 366.79 -8.81 -43.05 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.40 Total: 5.23 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.32 Total: 3.48 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.71 Total: -59.52 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.04 Total: 16.41 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.36 Total: -1.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.24 -8.81 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268928492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.180 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds