Wall clock time and date at job start Tue Mar 31 2020 13:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.53002 * 109.46957 * 240.00225 * 2 1 3 5 5 C 1.50704 * 109.47300 * 120.00702 * 2 1 3 6 6 N 1.29517 * 126.14546 * 59.96881 * 5 2 1 7 7 N 1.26249 * 116.57896 * 180.02562 * 6 5 2 8 8 C 1.29893 * 117.66245 * 0.02562 * 7 6 5 9 9 N 1.39075 * 125.65684 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99519 * 0.02562 * 9 8 7 11 11 O 1.21276 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.50705 * 119.99612 * 180.02562 * 10 9 8 13 13 N 1.46495 * 109.46958 * 180.02562 * 12 10 9 14 14 C 1.36944 * 119.99648 * 269.99412 * 13 12 10 15 15 H 1.08003 * 120.00136 * 192.62713 * 14 13 12 16 16 C 1.38810 * 119.99867 * 12.63826 * 14 13 12 17 17 N 1.31622 * 120.00055 * 25.30407 * 16 14 13 18 18 Si 1.86802 * 119.99967 * 205.30322 * 16 14 13 19 19 H 1.48497 * 109.46975 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46934 * 119.99713 * 18 16 14 21 21 H 1.48497 * 109.47483 * 239.99815 * 18 16 14 22 22 C 1.46498 * 120.00669 * 89.99768 * 13 12 10 23 23 C 1.52997 * 117.50084 * 194.11646 * 22 13 12 24 24 C 1.52997 * 117.49939 * 125.45302 * 22 13 12 25 25 S 1.71316 * 108.68914 * 0.23905 * 8 7 6 26 26 H 1.08998 * 109.46725 * 299.99645 * 1 2 3 27 27 H 1.08992 * 109.46939 * 59.99601 * 1 2 3 28 28 H 1.08999 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47145 * 300.00522 * 3 2 1 31 31 H 1.09001 * 109.46640 * 60.00043 * 3 2 1 32 32 H 1.09004 * 109.46996 * 300.00206 * 4 2 1 33 33 H 1.08995 * 109.46951 * 59.99818 * 4 2 1 34 34 H 1.08994 * 109.47273 * 180.02562 * 4 2 1 35 35 H 0.97001 * 119.99864 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47173 * 59.99596 * 12 10 9 37 37 H 1.08999 * 109.46833 * 299.99906 * 12 10 9 38 38 H 0.97004 * 119.99585 * 175.05803 * 17 16 14 39 39 H 1.08998 * 115.54672 * 339.79339 * 22 13 12 40 40 H 1.08994 * 117.50278 * 359.97438 * 23 22 13 41 41 H 1.09001 * 117.50028 * 145.02213 * 23 22 13 42 42 H 1.08997 * 117.50110 * 214.98445 * 24 22 13 43 43 H 1.08996 * 117.50047 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7106 1.2304 6 7 1.7936 -1.9421 1.5524 7 7 2.3072 -2.3542 2.6295 8 6 3.0235 -1.5154 3.3156 9 7 3.6625 -1.7907 4.5198 10 6 3.5652 -3.0175 5.0692 11 8 2.9208 -3.8815 4.5134 12 6 4.2572 -3.3156 6.3744 13 7 4.0006 -4.7064 6.7566 14 6 2.9114 -5.0148 7.5273 15 1 2.8286 -5.9925 7.9786 16 6 1.9137 -4.0709 7.7282 17 7 1.7258 -3.1136 6.8446 18 14 0.8376 -4.1593 9.2526 19 1 1.2493 -5.3199 10.0824 20 1 0.9909 -2.9094 10.0398 21 1 -0.5822 -4.3183 8.8478 22 6 4.9091 -5.7672 6.3145 23 6 4.4280 -7.2129 6.4537 24 6 5.5130 -6.6735 7.3892 25 16 3.0444 -0.0118 2.4950 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 4.1783 -1.0997 4.9642 36 1 3.8759 -2.6494 7.1482 37 1 5.3303 -3.1627 6.2598 38 1 0.9839 -2.4972 6.9478 39 1 5.5313 -5.5245 5.4531 40 1 3.4357 -7.3748 6.8746 41 1 4.7339 -7.9215 5.6840 42 1 6.5322 -7.0274 7.2345 43 1 5.2346 -6.4802 8.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268928492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:15 Heat of formation + Delta-G solvation = 67.853066 kcal Electronic energy + Delta-G solvation = -25549.061354 eV Core-core repulsion = 21951.103050 eV Total energy + Delta-G solvation = -3597.958304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20122 -40.39069 -38.62489 -37.93136 -35.75513 -35.22750 -32.55180 -31.02903 -28.84082 -28.26694 -28.18352 -26.98334 -25.66227 -23.51452 -22.99850 -21.78840 -21.42159 -20.65933 -19.35126 -18.64436 -17.88506 -17.59689 -17.24093 -16.90392 -16.18497 -15.88974 -15.79854 -15.31063 -14.90919 -14.82650 -14.77657 -14.27487 -14.21453 -13.67569 -13.26542 -13.15779 -13.12636 -12.75491 -12.73184 -12.61389 -12.53283 -12.35084 -12.20127 -12.16721 -12.00145 -11.90701 -11.76596 -11.70818 -11.31017 -11.04224 -11.02774 -10.50345 -10.48159 -10.28117 -9.52259 -8.76661 -7.96569 -5.22785 -0.37603 -0.28761 0.28073 1.40909 1.45202 1.54695 1.69017 2.05621 2.39335 2.55506 3.08870 3.16320 3.36990 3.43490 3.78113 3.88723 3.95278 4.18883 4.23619 4.39111 4.45345 4.46962 4.53133 4.75368 4.76571 4.83426 4.84588 4.89084 4.94877 4.97281 4.97661 5.05462 5.11932 5.23847 5.28556 5.35148 5.36515 5.42109 5.48899 5.66992 6.18146 6.46727 7.04084 7.61291 7.80572 7.92030 8.15852 9.09727 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.003476 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.211006 B = 8053.342729 C = 8767.756660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.019 3.981 3 C -0.148 4.148 4 C -0.133 4.133 5 C 0.001 3.999 6 N -0.268 5.268 7 N -0.337 5.337 8 C 0.227 3.773 9 N -0.626 5.626 10 C 0.516 3.484 11 O -0.507 6.507 12 C 0.174 3.826 13 N -0.553 5.553 14 C -0.256 4.256 15 H 0.076 0.924 16 C -0.045 4.045 17 N -0.914 5.914 18 Si 0.965 3.035 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.308 1.308 22 C 0.100 3.900 23 C -0.208 4.208 24 C -0.184 4.184 25 S 0.151 5.849 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.430 0.570 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.245 0.755 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 13.627 -11.383 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 C -0.206 4.206 4 C -0.191 4.191 5 C -0.283 4.283 6 N -0.102 5.102 7 N -0.182 5.182 8 C -0.144 4.144 9 N -0.281 5.281 10 C 0.301 3.699 11 O -0.375 6.375 12 C 0.043 3.957 13 N -0.268 5.268 14 C -0.386 4.386 15 H 0.094 0.906 16 C -0.240 4.240 17 N -0.560 5.560 18 Si 0.794 3.206 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.237 1.237 22 C -0.008 4.008 23 C -0.247 4.247 24 C -0.224 4.224 25 S 0.392 5.608 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.270 0.730 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.645 12.699 -11.521 18.389 hybrid contribution -1.158 -0.275 1.160 1.662 sum 5.487 12.424 -10.361 17.083 Atomic orbital electron populations 1.21883 0.91954 1.02106 1.03429 1.19412 0.96652 0.95331 0.87241 1.22064 1.01982 0.92037 1.04533 1.21866 1.01277 1.00124 0.95874 1.30659 1.01673 0.93460 1.02489 1.71281 1.18402 1.12272 1.08291 1.71525 1.13656 1.29943 1.03031 1.26587 0.97580 0.95033 0.95163 1.43808 1.50285 1.16314 1.17685 1.23121 0.80397 0.79799 0.86596 1.90644 1.38099 1.46846 1.61902 1.20722 0.96827 0.86844 0.91308 1.43800 1.25699 1.01397 1.55892 1.19385 0.99575 0.99330 1.20286 0.90645 1.25400 0.99168 0.98995 1.00463 1.69937 1.30993 1.21538 1.33551 0.85242 0.77208 0.77748 0.80370 1.19475 1.20738 1.23668 1.21254 0.96471 0.85743 0.97309 1.23131 0.98955 0.98635 1.03991 1.23361 0.97447 1.05245 0.96340 1.83942 1.50607 1.09687 1.16577 0.92960 0.88191 0.93870 0.91315 0.87933 0.91816 0.93784 0.88314 0.92364 0.73032 0.89065 0.88864 0.94551 0.87882 0.91309 0.88419 0.86845 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.46 71.98 0.61 -2.03 16 2 C 0.02 0.38 0.99 -52.92 -0.05 0.32 16 3 C -0.15 -1.92 7.60 71.98 0.55 -1.37 16 4 C -0.13 -2.40 8.46 71.98 0.61 -1.79 16 5 C 0.00 0.04 6.10 88.45 0.54 0.58 16 6 N -0.27 -11.06 11.65 -47.67 -0.56 -11.61 16 7 N -0.34 -16.09 9.74 -59.09 -0.58 -16.66 16 8 C 0.23 8.94 8.14 179.10 1.46 10.40 16 9 N -0.63 -23.72 5.41 -313.16 -1.69 -25.42 16 10 C 0.52 24.36 5.75 87.66 0.50 24.87 16 11 O -0.51 -29.97 14.53 -3.02 -0.04 -30.02 16 12 C 0.17 7.52 5.48 85.64 0.47 7.99 16 13 N -0.55 -26.81 2.38 -682.36 -1.62 -28.44 16 14 C -0.26 -13.86 8.89 84.03 0.75 -13.11 16 15 H 0.08 4.11 6.28 -2.91 -0.02 4.10 16 16 C -0.04 -2.46 4.83 84.86 0.41 -2.05 16 17 N -0.91 -52.27 8.85 21.65 0.19 -52.08 16 18 Si 0.96 45.39 29.63 68.60 2.03 47.42 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.31 -15.24 7.11 99.48 0.71 -14.54 16 22 C 0.10 4.17 6.60 44.99 0.30 4.47 16 23 C -0.21 -8.29 9.77 30.62 0.30 -7.99 16 24 C -0.18 -6.39 10.14 30.62 0.31 -6.08 16 25 S 0.15 4.02 21.97 -56.49 -1.24 2.78 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 0.83 8.01 -2.39 -0.02 0.81 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.84 8.00 -2.39 -0.02 0.82 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.43 11.94 8.82 -92.71 -0.82 11.12 16 36 H 0.09 4.14 6.61 -2.39 -0.02 4.12 16 37 H 0.09 3.13 8.07 -2.39 -0.02 3.11 16 38 H 0.24 14.09 8.32 -92.71 -0.77 13.32 16 39 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 40 H 0.07 3.13 6.44 -2.39 -0.02 3.11 16 41 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -80.32 366.79 3.45 -76.87 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.21 Total: 22.95 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.75 Total: 14.21 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -4.26 Total: -134.21 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.04 Total: -30.02 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.24 Total: 2.78 kcal Total: -80.32 3.45 -76.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268928492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.721 kcal (2) G-P(sol) polarization free energy of solvation -80.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds