Wall clock time and date at job start Tue Mar 31 2020 14:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 N 1.46496 * 109.47421 * 60.00300 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21579 * 119.99978 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99898 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99962 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47341 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47331 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00042 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00130 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00039 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46867 * 90.00143 * 15 13 11 17 17 H 1.48498 * 109.47506 * 210.00048 * 15 13 11 18 18 H 1.48501 * 109.47216 * 330.00286 * 15 13 11 19 19 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 20 20 C 1.38240 * 119.98824 * 119.72953 * 19 2 1 21 21 C 1.38214 * 120.00943 * 179.72617 * 20 19 2 22 22 C 1.38349 * 119.99017 * 0.54602 * 21 20 19 23 23 Cl 1.73599 * 120.01664 * 179.70575 * 22 21 20 24 24 C 1.38361 * 119.97123 * 359.72270 * 22 21 20 25 25 C 1.38214 * 119.98667 * 0.02562 * 24 22 21 26 26 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 32 32 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 34 34 H 0.97008 * 119.99406 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00054 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.47290 * 299.99863 * 9 8 6 37 37 H 1.09002 * 109.47352 * 59.99612 * 9 8 6 38 38 H 1.09005 * 109.47089 * 300.00131 * 10 9 8 39 39 H 1.09002 * 109.46787 * 59.99789 * 10 9 8 40 40 H 0.97000 * 120.00465 * 179.97438 * 14 13 11 41 41 H 1.07998 * 119.99492 * 359.97438 * 20 19 2 42 42 H 1.08002 * 120.00519 * 180.26657 * 21 20 19 43 43 H 1.07998 * 120.00288 * 179.97438 * 24 22 21 44 44 H 1.07996 * 119.99198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0307 -2.4454 6 6 1.8769 -0.4915 -3.6695 7 8 2.5759 -1.4800 -3.7811 8 7 1.4281 0.1442 -4.7700 9 6 1.7821 -0.3563 -6.1005 10 6 1.1489 0.5392 -7.1674 11 6 1.5135 0.0247 -8.5361 12 1 2.1343 -0.8535 -8.6352 13 6 1.0545 0.6750 -9.6619 14 7 1.3722 0.2257 -10.8563 15 14 -0.0199 2.1935 -9.4905 16 1 0.8384 3.4044 -9.4440 17 1 -0.9396 2.2830 -10.6530 18 1 -0.8126 2.1003 -8.2382 19 6 2.0323 -0.7105 1.2305 20 6 2.8224 -1.8377 1.1033 21 6 3.2881 -2.4863 2.2315 22 6 2.9540 -2.0139 3.4882 23 17 3.5321 -2.8326 4.9057 24 6 2.1585 -0.8890 3.6148 25 6 1.6978 -0.2381 2.4859 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7490 -1.2492 34 1 0.9938 0.7578 -2.3564 35 1 0.8708 0.9331 -4.6810 36 1 2.8659 -0.3482 -6.2154 37 1 1.4122 -1.3752 -6.2157 38 1 0.0650 0.5306 -7.0524 39 1 1.5184 1.5582 -7.0523 40 1 1.0490 0.6830 -11.6483 41 1 3.0792 -2.2092 0.1223 42 1 3.9089 -3.3644 2.1321 43 1 1.8971 -0.5200 4.5956 44 1 1.0766 0.6398 2.5846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273200721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:43 Heat of formation + Delta-G solvation = -29.828498 kcal Electronic energy + Delta-G solvation = -24141.375545 eV Core-core repulsion = 20504.844993 eV Total energy + Delta-G solvation = -3636.530552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63367 -39.50238 -37.53546 -36.46224 -34.93027 -33.47780 -32.70015 -31.61713 -30.19977 -29.77126 -27.67236 -26.88250 -24.65396 -23.26550 -22.80860 -20.84551 -20.69069 -19.69765 -18.32176 -17.49728 -16.87437 -16.23150 -15.60782 -15.54478 -15.47309 -14.64163 -14.62054 -14.41613 -14.09077 -13.93145 -13.88829 -13.62815 -13.48769 -13.38887 -12.78314 -12.71024 -12.59697 -12.18066 -12.13640 -11.84681 -11.47907 -11.37087 -11.35821 -11.23634 -11.18803 -10.87662 -10.38639 -10.27175 -9.98197 -9.77990 -9.46254 -9.32291 -9.08730 -8.97058 -8.62658 -8.38510 -6.10730 -4.10696 0.70944 0.87560 1.74545 2.93628 3.18694 3.24741 3.32251 3.33545 3.51929 4.11561 4.16234 4.37557 4.46953 4.51683 4.55836 4.57987 4.72137 4.89462 5.01301 5.21842 5.22147 5.25328 5.34993 5.38320 5.47335 5.52464 5.55084 5.64603 5.71407 5.82944 5.88840 5.89631 6.08399 6.12343 6.25245 6.36661 6.51227 6.59688 6.81641 7.03119 7.24835 7.28995 7.67768 8.28665 8.46120 8.89912 8.94476 9.49337 11.02318 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.001880 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.929587 B =14888.824261 C =15499.092898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C -0.140 4.140 4 C 0.148 3.852 5 N -0.751 5.751 6 C 0.699 3.301 7 O -0.594 6.594 8 N -0.742 5.742 9 C 0.148 3.852 10 C -0.022 4.022 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.267 1.267 19 C -0.060 4.060 20 C -0.107 4.107 21 C -0.105 4.105 22 C -0.039 4.039 23 Cl -0.075 7.075 24 C -0.109 4.109 25 C -0.101 4.101 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.393 0.607 35 H 0.391 0.609 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.264 0.736 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 1.517 32.829 32.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.197 4.197 4 C 0.023 3.977 5 N -0.409 5.409 6 C 0.399 3.601 7 O -0.473 6.473 8 N -0.396 5.396 9 C 0.026 3.974 10 C -0.059 4.059 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.061 4.061 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.066 4.066 23 Cl -0.046 7.046 24 C -0.128 4.128 25 C -0.119 4.119 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.227 0.773 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.416 0.531 32.611 32.618 hybrid contribution -0.999 1.446 0.171 1.766 sum -1.415 1.977 32.782 32.873 Atomic orbital electron populations 1.21914 0.92753 1.02806 1.02265 1.19750 0.96531 0.95798 0.91689 1.21914 1.01842 0.93711 1.02264 1.21254 0.99014 0.95601 0.81783 1.45144 1.57690 1.33603 1.04470 1.16011 0.80601 0.83153 0.80346 1.90904 1.42817 1.27606 1.85953 1.45516 1.55701 1.32365 1.06024 1.21372 0.99898 0.98332 0.77836 1.19797 0.96250 0.95219 0.94679 1.20920 1.32863 1.14232 0.88032 0.90582 1.25001 0.95833 0.97323 0.95158 1.69900 1.45541 1.40601 0.97617 0.86746 0.80862 0.83541 0.77867 1.20264 1.21301 1.19126 1.19760 0.96964 0.95238 0.94148 1.21274 0.97123 0.95038 0.99085 1.21101 1.00236 1.00590 0.90456 1.20969 1.01121 0.96416 0.88085 1.98376 1.87823 1.78597 1.39825 1.21023 0.97601 0.94503 0.99677 1.20909 0.99904 1.00007 0.91058 0.92023 0.91834 0.91934 0.91932 0.91828 0.92031 0.91326 0.91332 0.77256 0.77645 0.92165 0.92150 0.96049 0.96488 0.92565 0.84207 0.84789 0.84996 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.11 37.16 0.30 -0.57 16 2 C -0.04 -0.26 0.61 -155.66 -0.10 -0.35 16 3 C -0.14 -0.87 8.11 37.16 0.30 -0.57 16 4 C 0.15 1.46 3.22 -4.04 -0.01 1.45 16 5 N -0.75 -8.39 4.96 -65.23 -0.32 -8.72 16 6 C 0.70 11.39 8.57 -86.92 -0.74 10.65 16 7 O -0.59 -12.27 16.34 5.30 0.09 -12.18 16 8 N -0.74 -12.08 5.56 -65.23 -0.36 -12.45 16 9 C 0.15 3.04 5.61 -4.04 -0.02 3.01 16 10 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 11 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 12 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 15 Si 0.88 20.90 27.47 -169.99 -4.67 16.24 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -5.94 6.54 56.52 0.37 -5.58 16 19 C -0.06 -0.44 4.76 -104.62 -0.50 -0.94 16 20 C -0.11 -0.86 8.97 -39.59 -0.36 -1.21 16 21 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 22 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 23 Cl -0.08 -0.58 28.96 -51.86 -1.50 -2.09 16 24 C -0.11 -0.75 9.83 -39.54 -0.39 -1.14 16 25 C -0.10 -0.65 8.71 -39.59 -0.34 -0.99 16 26 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 27 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 31 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 32 H 0.07 0.75 7.52 -51.93 -0.39 0.36 16 33 H 0.07 0.75 7.50 -51.93 -0.39 0.36 16 34 H 0.39 3.30 6.18 -40.82 -0.25 3.05 16 35 H 0.39 5.18 8.49 -40.82 -0.35 4.84 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.14 1.11 5.89 -52.49 -0.31 0.80 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.60 7.10 -52.49 -0.37 0.23 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -33.12 370.89 -9.88 -43.00 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.43 Total: 3.22 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -3.04 Total: -6.13 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.09 Total: -47.65 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.12 -9.88 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273200721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.172 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds