Wall clock time and date at job start Tue Mar 31 2020 14:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 N 1.46496 * 109.47421 * 60.00300 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21579 * 119.99978 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99898 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99962 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47341 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47331 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00042 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00130 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00039 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46867 * 90.00143 * 15 13 11 17 17 H 1.48498 * 109.47506 * 210.00048 * 15 13 11 18 18 H 1.48501 * 109.47216 * 330.00286 * 15 13 11 19 19 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 20 20 C 1.38240 * 119.98824 * 119.72953 * 19 2 1 21 21 C 1.38214 * 120.00943 * 179.72617 * 20 19 2 22 22 C 1.38349 * 119.99017 * 0.54602 * 21 20 19 23 23 Cl 1.73599 * 120.01664 * 179.70575 * 22 21 20 24 24 C 1.38361 * 119.97123 * 359.72270 * 22 21 20 25 25 C 1.38214 * 119.98667 * 0.02562 * 24 22 21 26 26 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 32 32 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 34 34 H 0.97008 * 119.99406 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00054 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.47290 * 299.99863 * 9 8 6 37 37 H 1.09002 * 109.47352 * 59.99612 * 9 8 6 38 38 H 1.09005 * 109.47089 * 300.00131 * 10 9 8 39 39 H 1.09002 * 109.46787 * 59.99789 * 10 9 8 40 40 H 0.97000 * 120.00465 * 179.97438 * 14 13 11 41 41 H 1.07998 * 119.99492 * 359.97438 * 20 19 2 42 42 H 1.08002 * 120.00519 * 180.26657 * 21 20 19 43 43 H 1.07998 * 120.00288 * 179.97438 * 24 22 21 44 44 H 1.07996 * 119.99198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0307 -2.4454 6 6 1.8769 -0.4915 -3.6695 7 8 2.5759 -1.4800 -3.7811 8 7 1.4281 0.1442 -4.7700 9 6 1.7821 -0.3563 -6.1005 10 6 1.1489 0.5392 -7.1674 11 6 1.5135 0.0247 -8.5361 12 1 2.1343 -0.8535 -8.6352 13 6 1.0545 0.6750 -9.6619 14 7 1.3722 0.2257 -10.8563 15 14 -0.0199 2.1935 -9.4905 16 1 0.8384 3.4044 -9.4440 17 1 -0.9396 2.2830 -10.6530 18 1 -0.8126 2.1003 -8.2382 19 6 2.0323 -0.7105 1.2305 20 6 2.8224 -1.8377 1.1033 21 6 3.2881 -2.4863 2.2315 22 6 2.9540 -2.0139 3.4882 23 17 3.5321 -2.8326 4.9057 24 6 2.1585 -0.8890 3.6148 25 6 1.6978 -0.2381 2.4859 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7490 -1.2492 34 1 0.9938 0.7578 -2.3564 35 1 0.8708 0.9331 -4.6810 36 1 2.8659 -0.3482 -6.2154 37 1 1.4122 -1.3752 -6.2157 38 1 0.0650 0.5306 -7.0524 39 1 1.5184 1.5582 -7.0523 40 1 1.0490 0.6830 -11.6483 41 1 3.0792 -2.2092 0.1223 42 1 3.9089 -3.3644 2.1321 43 1 1.8971 -0.5200 4.5956 44 1 1.0766 0.6398 2.5846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273200721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:42 Heat of formation + Delta-G solvation = -50.876323 kcal Electronic energy + Delta-G solvation = -24142.288247 eV Core-core repulsion = 20504.844993 eV Total energy + Delta-G solvation = -3637.443254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42400 -40.57065 -38.24903 -37.15968 -36.52180 -34.83917 -34.35501 -32.22090 -31.82011 -30.45777 -28.14240 -27.91729 -26.29764 -23.91109 -23.46544 -22.61107 -21.98113 -20.38473 -19.49425 -18.90954 -18.13459 -17.22516 -16.81909 -16.42025 -16.20674 -16.11574 -15.67762 -15.46773 -15.24803 -14.92117 -14.89161 -14.55924 -14.40576 -14.35124 -14.20237 -13.46648 -13.32413 -13.26408 -13.02908 -12.75499 -12.67935 -12.40309 -12.16649 -12.13874 -11.96297 -11.90579 -11.77875 -11.74051 -11.52345 -11.46150 -11.28144 -10.77045 -10.35515 -10.00569 -9.70861 -9.53686 -8.28023 -6.35364 0.14279 0.32728 1.16719 1.40609 1.43618 1.54792 1.75138 2.19022 2.38727 2.63206 3.07025 3.34753 3.51513 3.65990 3.94784 3.95532 3.96220 4.15856 4.36196 4.37727 4.47464 4.47969 4.67670 4.69090 4.71438 4.78224 4.84626 4.91999 4.98423 4.99572 5.03598 5.17408 5.21380 5.27394 5.36580 5.41042 5.44106 5.47157 5.52444 5.56945 5.68920 5.82863 6.05528 6.25228 6.72100 7.16418 7.29051 7.62814 8.88771 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.001880 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.929587 B =14888.824261 C =15499.092898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.140 4.140 4 C 0.147 3.853 5 N -0.726 5.726 6 C 0.697 3.303 7 O -0.642 6.642 8 N -0.731 5.731 9 C 0.165 3.835 10 C -0.011 4.011 11 C -0.539 4.539 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.951 5.951 15 Si 0.961 3.039 16 H -0.265 1.265 17 H -0.288 1.288 18 H -0.235 1.235 19 C -0.064 4.064 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.051 4.051 23 Cl -0.078 7.078 24 C -0.111 4.111 25 C -0.095 4.095 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.410 0.590 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.150 0.850 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 4.613 35.354 35.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.197 4.197 4 C 0.023 3.977 5 N -0.384 5.384 6 C 0.397 3.603 7 O -0.524 6.524 8 N -0.387 5.387 9 C 0.040 3.960 10 C -0.049 4.049 11 C -0.578 4.578 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.591 5.591 15 Si 0.783 3.217 16 H -0.190 1.190 17 H -0.214 1.214 18 H -0.158 1.158 19 C -0.065 4.065 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.078 4.078 23 Cl -0.050 7.050 24 C -0.129 4.129 25 C -0.113 4.113 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.249 0.751 35 H 0.247 0.753 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.168 0.832 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.645 3.665 35.206 35.495 hybrid contribution -0.233 0.372 -0.593 0.738 sum -2.878 4.037 34.613 34.967 Atomic orbital electron populations 1.21940 0.91636 1.02556 1.03611 1.19647 0.97198 0.95916 0.89710 1.21940 1.01225 0.92962 1.03612 1.21341 0.98394 0.95497 0.82480 1.44910 1.56782 1.33697 1.03023 1.16163 0.80151 0.82577 0.81452 1.90882 1.44940 1.29828 1.86769 1.45094 1.56070 1.33012 1.04498 1.20857 0.98384 0.97128 0.79638 1.19644 0.97194 0.96019 0.92053 1.21263 1.32254 1.13032 0.91236 0.95412 1.26103 0.97529 1.01435 0.94377 1.70079 1.47402 1.42805 0.98829 0.85515 0.78795 0.78339 0.79060 1.19003 1.21391 1.15785 1.19851 0.96846 0.94984 0.94838 1.21298 0.98018 0.95863 0.98794 1.21188 1.00623 1.00948 0.90715 1.21116 1.01733 0.97046 0.87868 1.98371 1.87938 1.78777 1.39866 1.21293 0.96900 0.93922 1.00788 1.21158 0.99548 1.00455 0.90174 0.89984 0.91207 0.93021 0.93020 0.91196 0.89993 0.92582 0.92583 0.75086 0.75340 0.94193 0.94200 0.94380 0.94526 0.92374 0.85074 0.84585 0.83234 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.11 71.98 0.58 -0.72 16 2 C -0.02 -0.28 0.61 -52.93 -0.03 -0.32 16 3 C -0.14 -1.30 8.11 71.98 0.58 -0.72 16 4 C 0.15 2.79 3.22 86.38 0.28 3.07 16 5 N -0.73 -14.94 4.96 -478.54 -2.37 -17.31 16 6 C 0.70 22.14 8.57 179.06 1.53 23.67 16 7 O -0.64 -27.03 16.34 -3.96 -0.06 -27.09 16 8 N -0.73 -22.60 5.56 -478.55 -2.66 -25.26 16 9 C 0.16 6.74 5.61 86.38 0.48 7.23 16 10 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 11 C -0.54 -30.75 9.66 25.60 0.25 -30.51 16 12 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 13 C 0.00 0.14 5.47 84.66 0.46 0.61 16 14 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 15 Si 0.96 41.81 27.47 68.60 1.88 43.70 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 19 C -0.06 -0.84 4.76 -19.86 -0.09 -0.93 16 20 C -0.12 -1.94 8.97 22.26 0.20 -1.74 16 21 C -0.12 -1.84 9.83 22.29 0.22 -1.62 16 22 C -0.05 -0.76 6.32 22.33 0.14 -0.62 16 23 Cl -0.08 -1.17 28.96 -2.72 -0.08 -1.25 16 24 C -0.11 -1.28 9.83 22.29 0.22 -1.06 16 25 C -0.10 -0.96 8.71 22.27 0.19 -0.77 16 26 H 0.08 0.46 7.39 -2.39 -0.02 0.45 16 27 H 0.07 0.57 6.86 -2.39 -0.02 0.55 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.57 6.86 -2.39 -0.02 0.55 16 31 H 0.08 0.46 7.39 -2.39 -0.02 0.45 16 32 H 0.06 1.23 7.52 -2.38 -0.02 1.21 16 33 H 0.06 1.23 7.50 -2.39 -0.02 1.21 16 34 H 0.41 5.57 6.18 -92.70 -0.57 4.99 16 35 H 0.41 9.47 8.49 -92.71 -0.79 8.69 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.56 7.20 -2.38 -0.02 1.55 16 39 H 0.04 1.48 7.57 -2.39 -0.02 1.47 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.13 2.24 5.89 -2.91 -0.02 2.23 16 42 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 44 H 0.16 0.73 7.10 -2.91 -0.02 0.71 16 Total: -1.00 -74.87 370.89 1.76 -73.11 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.39 Total: 17.85 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.15 Total: -4.81 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -4.74 Total: -101.52 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.70 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -74.87 1.76 -73.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273200721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.237 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds