Wall clock time and date at job start Tue Mar 31 2020 13:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53002 * 109.47014 * 119.99972 * 2 1 3 5 5 C 1.50699 * 109.47052 * 299.99911 * 4 2 1 6 6 C 1.38237 * 120.00455 * 99.99936 * 5 4 2 7 7 C 1.38224 * 120.01313 * 179.74163 * 6 5 4 8 8 C 1.38264 * 120.02445 * 0.26351 * 7 6 5 9 9 C 1.38190 * 120.01695 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.01174 * 280.27671 * 5 4 2 11 11 Cl 1.73603 * 120.01189 * 0.02562 * 10 5 4 12 12 N 1.46497 * 109.46963 * 240.00036 * 2 1 3 13 13 C 1.34777 * 120.00212 * 60.00506 * 12 2 1 14 14 O 1.21583 * 119.99771 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99770 * 179.97438 * 13 12 2 16 16 C 1.46507 * 119.99603 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46834 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46821 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00400 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99804 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99865 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46936 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47064 * 119.99829 * 22 20 18 25 25 H 1.48500 * 109.46931 * 239.99595 * 22 20 18 26 26 H 1.09004 * 109.47045 * 299.99789 * 1 2 3 27 27 H 1.08996 * 109.47165 * 60.00218 * 1 2 3 28 28 H 1.09002 * 109.46585 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47173 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47069 * 300.00051 * 3 2 1 31 31 H 1.09004 * 109.47307 * 59.99737 * 3 2 1 32 32 H 1.08996 * 109.46910 * 180.02562 * 4 2 1 33 33 H 1.08991 * 109.47239 * 59.99853 * 4 2 1 34 34 H 1.08002 * 119.99593 * 0.02780 * 6 5 4 35 35 H 1.07996 * 119.98813 * 180.23496 * 7 6 5 36 36 H 1.08004 * 119.98845 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00844 * 180.02562 * 9 8 7 38 38 H 0.96997 * 119.99601 * 239.99259 * 12 2 1 39 39 H 0.97001 * 120.00262 * 359.97438 * 15 13 12 40 40 H 1.08993 * 109.47566 * 300.00136 * 16 15 13 41 41 H 1.09006 * 109.46728 * 60.00595 * 16 15 13 42 42 H 1.08999 * 109.47763 * 300.00285 * 17 16 15 43 43 H 1.08994 * 109.47104 * 60.00664 * 17 16 15 44 44 H 0.96990 * 120.00538 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0108 2.4797 6 6 0.4426 -0.5041 3.1641 7 6 -0.0150 0.1443 4.2958 8 6 0.6188 1.2898 4.7407 9 6 1.7099 1.7873 4.0540 10 6 2.1687 1.1383 2.9212 11 17 3.5391 1.7628 2.0577 12 7 2.0183 -0.6906 -1.1962 13 6 1.6928 -0.2301 -2.4203 14 8 0.9935 0.7582 -2.5318 15 7 2.1425 -0.8652 -3.5207 16 6 1.7882 -0.3649 -4.8513 17 6 2.4225 -1.2597 -5.9181 18 6 2.0586 -0.7447 -7.2867 19 1 1.4374 0.1331 -7.3859 20 6 2.5187 -1.3943 -8.4125 21 7 3.2756 -2.4631 -8.2919 22 14 2.0682 -0.7556 -10.1092 23 1 1.2138 0.4514 -9.9729 24 1 3.3060 -0.4053 -10.8510 25 1 1.3261 -1.8055 -10.8523 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7488 1.2493 34 1 -0.0526 -1.3990 2.8172 35 1 -0.8682 -0.2436 4.8323 36 1 0.2605 1.7962 5.6248 37 1 2.2051 2.6818 4.4019 38 1 2.5761 -1.4792 -1.1071 39 1 2.7007 -1.6535 -3.4317 40 1 0.7044 -0.3743 -4.9663 41 1 2.1571 0.6544 -4.9663 42 1 3.5064 -1.2499 -5.8030 43 1 2.0541 -2.2790 -5.8032 44 1 3.5996 -2.9199 -9.0838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273219340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:20 Heat of formation + Delta-G solvation = -14.500565 kcal Electronic energy + Delta-G solvation = -24869.070260 eV Core-core repulsion = 21233.204377 eV Total energy + Delta-G solvation = -3635.865883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52176 -39.46330 -36.93164 -36.63514 -34.62955 -33.05222 -32.61497 -31.16118 -30.66057 -28.97732 -27.27825 -27.11340 -24.69740 -22.99840 -22.55501 -21.14840 -20.53497 -19.47580 -18.06820 -17.27212 -16.32663 -16.08710 -16.03631 -15.59941 -15.14778 -14.81109 -14.49943 -14.29263 -14.04462 -13.97304 -13.58380 -13.33194 -13.17229 -13.06286 -12.37248 -12.26418 -12.09899 -11.91698 -11.85424 -11.69384 -11.37954 -11.16538 -11.11495 -11.04700 -10.98382 -10.59039 -10.32221 -10.08226 -9.66607 -9.45298 -9.24272 -9.18449 -8.93443 -8.84160 -8.45740 -8.18237 -6.07118 -4.09391 0.77933 0.87892 1.86640 3.03725 3.28829 3.30007 3.37633 3.43330 3.68546 4.31904 4.36986 4.43178 4.58447 4.64107 4.79351 4.84946 4.96098 5.03913 5.08096 5.29874 5.30051 5.46512 5.48968 5.60884 5.78788 5.83466 5.85272 5.96821 6.01250 6.04657 6.11167 6.33158 6.41158 6.44320 6.46277 6.56215 6.80640 6.84324 7.09606 7.33618 7.61143 7.66934 7.92722 8.29716 8.53158 8.96431 9.10727 9.55240 11.04627 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.002194 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.667896 B =12761.130447 C =13034.741485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.204 3.796 3 C -0.172 4.172 4 C -0.089 4.089 5 C -0.060 4.060 6 C -0.102 4.102 7 C -0.115 4.115 8 C -0.113 4.113 9 C -0.111 4.111 10 C -0.032 4.032 11 Cl -0.058 7.058 12 N -0.747 5.747 13 C 0.702 3.298 14 O -0.592 6.592 15 N -0.741 5.741 16 C 0.141 3.859 17 C 0.012 3.988 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.391 0.609 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 3.288 29.630 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.117 3.883 3 C -0.230 4.230 4 C -0.127 4.127 5 C -0.061 4.061 6 C -0.120 4.120 7 C -0.133 4.133 8 C -0.131 4.131 9 C -0.129 4.129 10 C -0.059 4.059 11 Cl -0.029 7.029 12 N -0.404 5.404 13 C 0.402 3.598 14 O -0.471 6.471 15 N -0.394 5.394 16 C 0.019 3.981 17 C -0.025 4.025 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.225 0.775 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.028 4.150 29.294 29.741 hybrid contribution 0.509 -0.502 -0.925 1.169 sum -2.519 3.648 28.369 28.714 Atomic orbital electron populations 1.22283 0.94452 1.01880 1.03553 1.19901 0.94059 0.92262 0.82030 1.22974 1.01178 0.95485 1.03381 1.20913 1.01899 0.99072 0.90792 1.19515 0.95643 0.94224 0.96726 1.21081 0.95373 1.00393 0.95139 1.21250 0.99942 0.95623 0.96477 1.21118 0.95489 0.96514 1.00004 1.21077 0.97402 1.00323 0.94147 1.20868 0.92951 0.96466 0.95603 1.98389 1.43203 1.86450 1.74811 1.45265 1.57483 1.33298 1.04321 1.16011 0.80476 0.83087 0.80224 1.90819 1.42884 1.27552 1.85824 1.45565 1.55478 1.32429 1.05941 1.21552 0.99472 0.98452 0.78663 1.19325 0.96271 0.94788 0.92121 1.21098 1.31731 1.12537 0.90370 0.92183 1.25005 0.94997 0.94912 0.99480 1.69963 1.34816 1.19137 1.29476 0.86462 0.78263 0.78953 0.83922 1.19568 1.20965 1.20969 0.92316 0.89806 0.93046 0.91996 0.90490 0.91892 0.89656 0.89928 0.85013 0.85396 0.85228 0.84981 0.77528 0.77541 0.92878 0.92887 0.96022 0.96022 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 7.99 37.16 0.30 -1.74 16 2 C 0.20 2.40 0.83 -131.82 -0.11 2.29 16 3 C -0.17 -2.27 6.43 37.16 0.24 -2.03 16 4 C -0.09 -0.79 4.34 -27.88 -0.12 -0.91 16 5 C -0.06 -0.52 3.99 -104.59 -0.42 -0.94 16 6 C -0.10 -0.75 8.71 -39.59 -0.34 -1.09 16 7 C -0.11 -0.73 10.05 -39.58 -0.40 -1.13 16 8 C -0.11 -0.72 10.05 -39.59 -0.40 -1.12 16 9 C -0.11 -0.84 9.83 -39.55 -0.39 -1.23 16 10 C -0.03 -0.29 4.99 -39.50 -0.20 -0.49 16 11 Cl -0.06 -0.56 22.38 -51.86 -1.16 -1.72 16 12 N -0.75 -9.66 5.11 -52.42 -0.27 -9.93 16 13 C 0.70 12.25 7.98 -86.92 -0.69 11.55 16 14 O -0.59 -12.34 12.55 5.29 0.07 -12.27 16 15 N -0.74 -13.25 5.56 -65.22 -0.36 -13.61 16 16 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 27 H 0.08 1.33 6.16 -51.93 -0.32 1.01 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 30 H 0.08 1.28 6.16 -51.93 -0.32 0.96 16 31 H 0.06 0.76 5.03 -51.93 -0.26 0.50 16 32 H 0.08 0.74 7.37 -51.93 -0.38 0.36 16 33 H 0.08 0.61 8.00 -51.93 -0.42 0.19 16 34 H 0.13 0.78 8.04 -52.49 -0.42 0.35 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.39 3.97 8.49 -40.82 -0.35 3.63 16 39 H 0.39 6.06 8.49 -40.82 -0.35 5.71 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -32.42 361.50 -10.06 -42.48 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.39 Total: 5.58 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -3.11 Total: -6.93 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.11 Total: -49.14 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.16 Total: -1.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.42 -10.06 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273219340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.983 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds