Wall clock time and date at job start Tue Mar 31 2020 14:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47429 * 2 1 4 4 H 1.08999 * 109.47122 * 55.00078 * 3 2 1 5 5 C 1.50699 * 109.47013 * 175.00093 * 3 2 1 6 6 H 1.08006 * 119.99529 * 120.00294 * 5 3 2 7 7 C 1.37874 * 120.00295 * 299.99753 * 5 3 2 8 8 N 1.31511 * 119.99771 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00148 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47438 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47441 * 119.99987 * 9 7 5 12 12 H 1.48503 * 109.46932 * 240.00210 * 9 7 5 13 13 N 1.46507 * 109.47168 * 295.00104 * 3 2 1 14 14 C 1.34772 * 119.99745 * 84.99745 * 13 3 2 15 15 O 1.21581 * 120.00233 * 359.97438 * 14 13 3 16 16 C 1.47668 * 120.00104 * 180.02562 * 14 13 3 17 17 C 1.41525 * 126.44656 * 180.02562 * 16 14 13 18 18 C 1.35354 * 105.55777 * 179.78137 * 17 16 14 19 19 N 1.35850 * 107.12278 * 0.37319 * 18 17 16 20 20 C 1.40145 * 124.95846 * 179.86644 * 19 18 17 21 21 C 1.38985 * 119.99322 * 359.93443 * 20 19 18 22 22 C 1.38214 * 120.23969 * 180.24906 * 21 20 19 23 23 C 1.38017 * 120.22224 * 359.79542 * 22 21 20 24 24 C 1.39639 * 119.98430 * 359.96930 * 23 22 21 25 25 C 1.43205 * 120.11963 * 179.97438 * 24 23 22 26 26 N 9.49714 * 109.74220 * 292.90950 * 2 1 3 27 27 C 1.38560 * 119.99389 * 179.71759 * 20 19 18 28 28 N 1.28471 * 110.08507 * 359.60869 * 19 18 17 29 29 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46972 * 300.00050 * 1 2 3 31 31 H 1.09000 * 109.47061 * 59.99721 * 1 2 3 32 32 H 1.09007 * 109.46972 * 239.99950 * 2 1 3 33 33 H 1.09000 * 109.47061 * 120.00279 * 2 1 3 34 34 H 0.97003 * 120.00137 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00077 * 265.00282 * 13 3 2 36 36 H 1.08002 * 127.22342 * 0.02562 * 17 16 14 37 37 H 1.08003 * 126.43646 * 180.21921 * 18 17 16 38 38 H 1.08006 * 119.88563 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.89381 * 179.76772 * 22 21 20 40 40 H 1.07998 * 120.00814 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.11564 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0049 0.8810 1.3817 10 1 6.5988 1.5459 0.1940 11 1 6.3992 1.6165 2.6100 12 1 6.4970 -0.5178 1.4628 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4321 16 6 0.0443 3.3242 -2.6289 17 6 -1.1914 3.9595 -2.8977 18 6 -1.0949 4.4188 -4.1673 19 7 0.1330 4.0648 -4.6284 20 6 0.6237 4.3532 -5.9091 21 6 -0.1664 5.0508 -6.8150 22 6 0.3105 5.3335 -8.0811 23 6 1.5763 4.9285 -8.4531 24 6 2.3799 4.2313 -7.5487 25 6 3.6936 3.8092 -7.9318 26 7 4.7380 3.4797 -8.2338 27 6 1.8981 3.9466 -6.2703 28 7 0.7807 3.4317 -3.7173 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8294 -0.0619 2.9494 35 1 2.2719 2.1231 -1.9979 36 1 -2.0332 4.0607 -2.2287 37 1 -1.8526 4.9621 -4.7123 38 1 -1.1580 5.3702 -6.5299 39 1 -0.3097 5.8727 -8.7818 40 1 1.9453 5.1509 -9.4434 41 1 2.5146 3.4071 -5.5666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282393699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:56 Heat of formation + Delta-G solvation = 105.082111 kcal Electronic energy + Delta-G solvation = -25744.051018 eV Core-core repulsion = 22012.263136 eV Total energy + Delta-G solvation = -3731.787883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.96763 -39.90994 -38.71643 -36.84767 -35.05628 -33.92709 -32.39877 -32.15737 -31.08704 -30.59872 -29.62174 -27.02571 -24.74411 -24.68203 -23.02527 -22.04104 -21.71089 -19.99743 -19.54594 -19.20807 -17.75191 -16.93315 -16.76046 -16.27313 -15.92812 -15.70460 -15.24839 -14.54260 -14.52943 -14.27609 -14.21199 -13.86642 -13.69639 -13.40490 -13.21109 -12.97053 -12.82800 -12.64056 -12.31366 -12.01529 -11.98307 -11.49697 -11.23125 -10.97652 -10.89290 -10.82458 -10.38954 -10.29122 -10.14700 -9.64438 -9.61332 -9.34665 -9.25969 -9.00857 -8.57975 -8.47639 -7.80145 -6.09738 -4.18484 0.05981 0.43267 1.77625 2.04596 2.16598 2.35728 2.57943 3.26513 3.34111 3.34541 3.35309 3.37934 3.97429 3.99966 4.10548 4.29023 4.37007 4.41888 4.47862 4.59996 4.81989 4.93220 5.21903 5.23693 5.40670 5.48548 5.61731 5.65680 5.66159 5.77788 5.99052 6.37306 6.42810 6.49822 6.68891 6.71855 7.08006 7.08413 7.21991 7.38094 7.44852 7.63590 7.71623 7.83566 7.94482 8.20141 8.69361 8.79749 9.11139 9.48485 10.95736 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.003274 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.996276 B = 8550.829688 C =10509.726629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.689 5.689 14 C 0.584 3.416 15 O -0.537 6.537 16 C 0.019 3.981 17 C -0.168 4.168 18 C -0.023 4.023 19 N -0.248 5.248 20 C 0.150 3.850 21 C -0.104 4.104 22 C -0.094 4.094 23 C -0.078 4.078 24 C -0.001 4.001 25 C 0.251 3.749 26 N -0.401 5.401 27 C -0.066 4.066 28 N -0.264 5.264 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.395 0.605 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 10.897 -21.283 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.337 5.337 14 C 0.366 3.634 15 O -0.414 6.414 16 C -0.144 4.144 17 C -0.195 4.195 18 C -0.161 4.161 19 N -0.030 5.030 20 C 0.059 3.941 21 C -0.125 4.125 22 C -0.112 4.112 23 C -0.099 4.099 24 C -0.005 4.005 25 C -0.065 4.065 26 N -0.076 5.076 27 C -0.089 4.089 28 N -0.096 5.096 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.228 0.772 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.101 9.965 -21.330 24.898 hybrid contribution 0.053 0.306 0.217 0.378 sum -8.048 10.271 -21.113 24.820 Atomic orbital electron populations 1.21849 0.98310 0.98133 1.01253 1.21942 0.92666 0.99660 1.02396 1.18874 0.94386 0.89272 0.80695 0.93020 1.21270 0.90645 1.38887 1.06296 0.91978 1.24867 0.98586 0.94800 0.95365 1.69901 1.35002 1.37701 1.09363 0.86410 0.84920 0.77772 0.78119 1.19739 1.20871 1.20874 1.46435 1.14022 1.54411 1.18783 1.16851 0.83243 0.79060 0.84289 1.90779 1.51826 1.60404 1.38385 1.22715 0.93693 1.03795 0.94211 1.21915 0.99396 1.02393 0.95770 1.22960 0.89748 1.06694 0.96706 1.42679 1.11261 1.39757 1.09273 1.17386 0.94134 1.00343 0.82277 1.21109 1.00274 0.97981 0.93166 1.20920 0.95414 0.99496 0.95410 1.21296 0.93577 0.95711 0.99286 1.15717 0.88041 1.02406 0.94357 1.25474 0.92690 0.94134 0.94181 1.81302 1.10997 1.07896 1.07411 1.21000 0.94102 0.98333 0.95433 1.73621 1.23824 1.14189 0.97919 0.95781 0.93031 0.94309 0.94963 0.88147 0.92627 0.77240 0.81376 0.79816 0.84014 0.83605 0.84171 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.87 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.69 -15.08 5.02 -55.93 -0.28 -15.36 16 14 C 0.58 12.16 6.39 -12.41 -0.08 12.08 16 15 O -0.54 -12.54 14.05 5.29 0.07 -12.47 16 16 C 0.02 0.32 7.13 -82.76 -0.59 -0.27 16 17 C -0.17 -2.22 10.80 -39.36 -0.42 -2.64 16 18 C -0.02 -0.22 10.78 -16.80 -0.18 -0.41 16 19 N -0.25 -2.89 3.52 -10.59 -0.04 -2.93 16 20 C 0.15 1.32 6.65 -83.66 -0.56 0.76 16 21 C -0.10 -0.53 9.43 -39.31 -0.37 -0.90 16 22 C -0.09 -0.32 10.02 -39.67 -0.40 -0.72 16 23 C -0.08 -0.36 9.75 -39.14 -0.38 -0.74 16 24 C 0.00 -0.01 5.73 -106.96 -0.61 -0.62 16 25 C 0.25 2.49 15.33 -22.47 -0.34 2.15 16 26 N -0.40 -5.06 18.54 41.84 0.78 -4.29 16 27 C -0.07 -0.61 9.30 -38.97 -0.36 -0.97 16 28 N -0.26 -4.01 10.84 33.42 0.36 -3.65 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.22 7.84 -51.92 -0.41 0.81 16 31 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 32 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.39 8.00 8.26 -40.82 -0.34 7.66 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.18 0.91 6.95 -52.48 -0.36 0.54 16 38 H 0.14 0.37 6.63 -52.48 -0.35 0.02 16 39 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 40 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 41 H 0.15 1.63 7.64 -52.49 -0.40 1.23 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -33.16 358.64 -7.28 -40.45 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.51 Total: 5.60 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.68 Total: -4.54 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 1.45 Total: -50.39 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.16 -7.28 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282393699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.531 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds