Wall clock time and date at job start Tue Mar 31 2020 14:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99878 * 2 1 4 4 N 1.46906 * 109.46900 * 124.13352 * 3 2 1 5 5 C 1.46898 * 111.00193 * 300.07244 * 4 3 2 6 6 C 1.50693 * 109.47332 * 288.29124 * 5 4 3 7 7 H 1.07997 * 120.00425 * 355.14042 * 6 5 4 8 8 C 1.37884 * 120.00256 * 175.14349 * 6 5 4 9 9 N 1.31515 * 119.99982 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99550 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47391 * 90.00088 * 10 8 6 12 12 H 1.48506 * 109.46955 * 210.00146 * 10 8 6 13 13 H 1.48501 * 109.47660 * 329.99737 * 10 8 6 14 14 C 1.46895 * 111.00138 * 64.03068 * 4 3 2 15 15 C 1.50706 * 109.47382 * 66.04431 * 14 4 3 16 16 N 1.30451 * 126.18079 * 89.97493 * 15 14 4 17 17 N 1.28670 * 109.51769 * 180.02562 * 16 15 14 18 18 C 1.31277 * 109.23392 * 0.02562 * 17 16 15 19 19 C 1.47730 * 126.38142 * 180.02562 * 18 17 16 20 20 C 1.39713 * 119.99339 * 179.70416 * 19 18 17 21 21 C 1.37610 * 120.00495 * 179.72115 * 20 19 18 22 22 C 1.39783 * 119.98992 * 0.52209 * 21 20 19 23 23 C 1.43204 * 120.00695 * 179.76650 * 22 21 20 24 24 N 8.90297 * 103.11580 * 97.08080 * 15 1 2 25 25 C 1.39785 * 119.98452 * 359.74842 * 22 21 20 26 26 C 1.37598 * 119.99427 * 359.97438 * 25 22 21 27 27 O 1.34362 * 126.18123 * 270.02414 * 15 14 4 28 28 H 1.08004 * 120.00235 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00227 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00227 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47272 * 4.13779 * 3 2 1 32 32 H 1.09000 * 109.47040 * 244.13109 * 3 2 1 33 33 H 1.09003 * 109.46429 * 48.28763 * 5 4 3 34 34 H 1.09002 * 109.47229 * 168.28497 * 5 4 3 35 35 H 0.97002 * 119.99520 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46857 * 306.04821 * 14 4 3 37 37 H 1.09000 * 109.47633 * 186.04505 * 14 4 3 38 38 H 1.08001 * 120.00104 * 359.97438 * 20 19 18 39 39 H 1.07997 * 120.00146 * 180.26775 * 21 20 19 40 40 H 1.08004 * 120.00293 * 179.97438 * 25 22 21 41 41 H 1.07997 * 119.99311 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9813 1.3405 1.1465 5 6 2.2469 1.2190 2.4129 6 6 1.4884 2.4939 2.6780 7 1 1.6074 3.3403 2.0179 8 6 0.6424 2.5798 3.7634 9 7 -0.0192 3.6926 3.9951 10 14 0.4360 1.1155 4.9048 11 1 1.4404 1.1929 5.9959 12 1 -0.9299 1.1306 5.4873 13 1 0.6334 -0.1412 4.1386 14 6 4.0082 0.2965 1.0312 15 6 4.8970 0.5941 -0.1490 16 7 5.9898 1.3063 -0.1299 17 7 6.4926 1.3539 -1.3133 18 6 5.7314 0.6687 -2.1345 19 6 5.9565 0.4741 -3.5815 20 6 5.0589 -0.2901 -4.3314 21 6 5.2653 -0.4668 -5.6804 22 6 6.3789 0.1094 -6.2983 23 6 6.5967 -0.0784 -7.7012 24 7 6.7690 -0.2268 -8.8141 25 6 7.2798 0.8692 -5.5465 26 6 7.0698 1.0502 -4.1988 27 8 4.7065 0.1747 -1.4111 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3574 2.1322 0.0741 32 1 2.6334 1.3955 -0.9247 33 1 1.5465 0.3863 2.3481 34 1 2.9509 1.0394 3.2254 35 1 -0.6146 3.7528 4.7585 36 1 3.5278 -0.6715 0.8891 37 1 4.6079 0.2746 1.9411 38 1 4.2009 -0.7388 -3.8531 39 1 4.5691 -1.0539 -6.2609 40 1 8.1406 1.3142 -6.0235 41 1 7.7655 1.6376 -3.6181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292073124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:19 Heat of formation + Delta-G solvation = 133.457672 kcal Electronic energy + Delta-G solvation = -25535.756582 eV Core-core repulsion = 21805.199156 eV Total energy + Delta-G solvation = -3730.557426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.18113 -39.96201 -37.88923 -36.94856 -36.20257 -33.53545 -32.93361 -32.43377 -31.78936 -30.62832 -28.32359 -27.00215 -25.28883 -24.50658 -23.34167 -22.46799 -21.96584 -21.04719 -19.52032 -19.19083 -17.96257 -17.46984 -16.86067 -16.44430 -15.88557 -15.56949 -15.10684 -14.95971 -14.54868 -14.54424 -14.20493 -14.16412 -14.04218 -13.97481 -13.27699 -13.03025 -12.84289 -12.64185 -12.47786 -12.42439 -12.16983 -11.90204 -11.70449 -11.62487 -11.25053 -11.02706 -10.98549 -10.77733 -10.60833 -10.35597 -10.03579 -9.69153 -9.48575 -9.02135 -8.89120 -8.63726 -7.71540 -6.11792 -4.10076 -0.26671 0.72718 1.23464 2.03173 2.16819 2.21349 2.60359 2.65255 3.22668 3.29299 3.29510 3.31027 3.32709 3.55501 4.11606 4.24664 4.34591 4.39411 4.59249 4.60526 4.72774 5.01717 5.05495 5.16059 5.18609 5.24096 5.25922 5.38706 5.45831 5.56302 5.63546 5.65096 5.66172 5.78682 5.81935 6.07894 6.18800 6.37589 6.60977 6.77419 6.92351 6.96870 7.07405 7.38761 7.59715 7.73466 8.24829 8.53088 8.97262 9.48321 11.01093 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.002460 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.120670 B =11379.068786 C =11932.984534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.192 4.192 3 C 0.086 3.914 4 N -0.512 5.512 5 C 0.161 3.839 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.071 3.929 9 N -0.897 5.897 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.136 3.864 15 C 0.205 3.795 16 N -0.272 5.272 17 N -0.262 5.262 18 C 0.176 3.824 19 C 0.020 3.980 20 C -0.088 4.088 21 C -0.069 4.069 22 C -0.013 4.013 23 C 0.253 3.747 24 N -0.410 5.410 25 C -0.069 4.069 26 C -0.072 4.072 27 O -0.218 6.218 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.007 0.993 34 H 0.027 0.973 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.161 -11.163 -16.376 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.211 4.211 3 C -0.042 4.042 4 N -0.236 5.236 5 C 0.036 3.964 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.006 3.994 15 C -0.005 4.005 16 N -0.119 5.119 17 N -0.110 5.110 18 C -0.031 4.031 19 C 0.017 3.983 20 C -0.107 4.107 21 C -0.089 4.089 22 C -0.017 4.017 23 C -0.063 4.063 24 N -0.085 5.085 25 C -0.089 4.089 26 C -0.091 4.091 27 O -0.096 6.096 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.504 -10.100 -17.461 23.222 hybrid contribution -1.708 -2.142 0.823 2.860 sum 9.796 -12.242 -16.639 22.862 Atomic orbital electron populations 1.23835 0.95975 1.01686 0.99192 1.23476 0.96888 0.99339 1.01432 1.21359 0.94905 0.95416 0.92531 1.62322 1.13901 1.42612 1.04731 1.20306 0.92724 0.98376 0.84965 1.20895 1.23703 0.98095 1.11867 0.90066 1.24857 0.95310 0.95624 0.97271 1.69883 1.28506 1.25948 1.29207 0.86934 0.77809 0.83798 0.81676 1.20077 1.21168 1.19116 1.20742 0.92992 0.95800 0.89821 1.28311 0.95533 0.92976 0.83688 1.74526 1.08037 1.16001 1.13337 1.74728 1.23792 1.16361 0.96156 1.25217 0.85638 0.97215 0.95062 1.17442 0.96771 0.99575 0.84507 1.21222 0.98935 0.97127 0.93448 1.21086 0.95731 0.97887 0.94203 1.16191 0.97867 1.02288 0.85336 1.25634 0.93999 0.94001 0.92621 1.81290 1.07464 1.07930 1.11823 1.21120 0.98426 0.96291 0.93057 1.21142 0.95961 0.97888 0.94132 1.84851 1.43993 1.60162 1.20640 0.89333 0.87880 0.88474 0.88363 0.92290 0.97526 0.95496 0.92567 0.91702 0.86126 0.83772 0.83950 0.83765 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 14.32 29.02 0.42 -2.13 16 2 C -0.19 -2.94 7.42 -36.03 -0.27 -3.21 16 3 C 0.09 1.48 5.49 -4.97 -0.03 1.46 16 4 N -0.51 -9.68 4.65 -238.96 -1.11 -10.79 16 5 C 0.16 3.53 3.68 -4.98 -0.02 3.51 16 6 C -0.51 -13.51 9.08 -34.44 -0.31 -13.82 16 7 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 10 Si 0.87 20.29 27.57 -169.99 -4.69 15.60 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -5.87 6.40 56.52 0.36 -5.51 16 14 C 0.14 2.05 5.43 -4.98 -0.03 2.03 16 15 C 0.20 3.11 7.04 -12.86 -0.09 3.02 16 16 N -0.27 -4.55 12.22 32.58 0.40 -4.15 16 17 N -0.26 -3.92 11.91 32.05 0.38 -3.54 16 18 C 0.18 2.20 7.98 -13.91 -0.11 2.09 16 19 C 0.02 0.17 5.88 -104.91 -0.62 -0.44 16 20 C -0.09 -0.59 9.70 -39.26 -0.38 -0.97 16 21 C -0.07 -0.37 9.74 -39.23 -0.38 -0.75 16 22 C -0.01 -0.08 5.74 -106.81 -0.61 -0.69 16 23 C 0.25 1.95 15.32 -22.47 -0.34 1.61 16 24 N -0.41 -4.22 18.54 41.84 0.78 -3.44 16 25 C -0.07 -0.36 9.73 -39.24 -0.38 -0.75 16 26 C -0.07 -0.50 9.68 -39.26 -0.38 -0.88 16 27 O -0.22 -2.91 9.95 4.09 0.04 -2.87 16 28 H 0.09 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.10 1.65 7.84 -52.49 -0.41 1.24 16 30 H 0.10 1.32 6.79 -52.49 -0.36 0.97 16 31 H 0.10 1.93 7.02 -51.93 -0.36 1.57 16 32 H 0.06 0.95 6.61 -51.93 -0.34 0.61 16 33 H 0.01 0.15 5.43 -51.93 -0.28 -0.13 16 34 H 0.03 0.58 7.48 -51.93 -0.39 0.19 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 0.85 6.33 -51.93 -0.33 0.52 16 37 H 0.12 1.71 7.86 -51.93 -0.41 1.30 16 38 H 0.14 0.86 7.92 -52.49 -0.42 0.45 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.15 1.01 7.85 -52.49 -0.41 0.59 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -31.92 362.61 -6.17 -38.09 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.57 Total: -0.64 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.63 Total: -8.06 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 1.22 Total: -47.59 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.69 Total: 15.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.92 -6.17 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292073124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.549 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds