Wall clock time and date at job start Tue Mar 31 2020 13:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00183 * 2 1 4 4 N 1.46506 * 109.46706 * 125.00251 * 3 2 1 5 5 C 1.46499 * 119.99925 * 269.99864 * 4 3 2 6 6 C 1.50697 * 109.47340 * 270.00235 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99650 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99850 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46846 * 90.00279 * 10 8 6 12 12 H 1.48502 * 109.47123 * 209.99843 * 10 8 6 13 13 H 1.48493 * 109.47547 * 329.99926 * 10 8 6 14 14 C 1.34777 * 119.99880 * 90.00613 * 4 3 2 15 15 O 1.21583 * 119.99947 * 179.97438 * 14 4 3 16 16 N 1.34777 * 119.99726 * 0.26799 * 14 4 3 17 17 C 1.39079 * 119.99724 * 179.72728 * 16 14 4 18 18 N 1.29892 * 125.65786 * 0.02562 * 17 16 14 19 19 N 1.26242 * 117.66405 * 179.97438 * 18 17 16 20 20 C 1.29504 * 116.58371 * 0.02562 * 19 18 17 21 21 C 1.50696 * 126.14597 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47174 * 89.97277 * 21 20 19 23 23 C 1.53008 * 109.47268 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47187 * 180.02562 * 23 22 21 25 25 S 1.71313 * 125.65689 * 179.72106 * 17 16 14 26 26 H 1.08002 * 119.99558 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.00483 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99855 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47130 * 5.00824 * 3 2 1 30 30 H 1.09001 * 109.47582 * 245.00264 * 3 2 1 31 31 H 1.08994 * 109.47013 * 30.00340 * 5 4 3 32 32 H 1.09005 * 109.46881 * 150.00475 * 5 4 3 33 33 H 0.97004 * 119.99666 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00483 * 359.73178 * 16 14 4 35 35 H 1.09008 * 109.47342 * 209.97588 * 21 20 19 36 36 H 1.09003 * 109.47523 * 329.97599 * 21 20 19 37 37 H 1.08995 * 109.47602 * 300.00368 * 22 21 20 38 38 H 1.09001 * 109.46837 * 60.00284 * 22 21 20 39 39 H 1.09003 * 109.46807 * 300.00376 * 23 22 21 40 40 H 1.08993 * 109.47035 * 60.00060 * 23 22 21 41 41 H 1.09001 * 109.47192 * 60.00065 * 24 23 22 42 42 H 1.09000 * 109.47387 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.46964 * 300.00105 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1315 5 6 2.5590 1.8647 2.4249 6 6 2.8444 3.3434 2.4806 7 1 3.3035 3.8369 1.6367 8 6 2.5196 4.0662 3.6089 9 7 1.9602 3.4653 4.6362 10 14 2.8741 5.8990 3.6781 11 1 1.7014 6.6498 3.1619 12 1 3.1386 6.2993 5.0834 13 1 4.0640 6.2049 2.8440 14 6 4.2498 0.8660 0.9823 15 8 5.0220 0.8885 1.9212 16 7 4.6515 0.3808 -0.2092 17 6 5.9492 -0.0945 -0.3646 18 7 6.8610 -0.1233 0.5601 19 7 7.9932 -0.5893 0.2526 20 6 8.1398 -0.9979 -0.9675 21 6 9.3918 -1.5890 -1.5625 22 6 9.3783 -3.1073 -1.3744 23 6 10.6497 -3.7075 -1.9780 24 6 10.6359 -5.2258 -1.7904 25 16 6.6083 -0.7460 -1.8055 26 1 -0.5399 0.9354 0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6213 1.4027 -0.9314 31 1 1.4889 1.6964 2.5460 32 1 3.0991 1.3600 3.2260 33 1 1.7313 3.9740 5.4299 34 1 4.0355 0.3631 -0.9583 35 1 9.4341 -1.3550 -2.6264 36 1 10.2649 -1.1689 -1.0632 37 1 9.3360 -3.3413 -0.3107 38 1 8.5052 -3.5275 -1.8738 39 1 10.6924 -3.4735 -3.0417 40 1 11.5225 -3.2872 -1.4783 41 1 9.7631 -5.6458 -2.2904 42 1 11.5414 -5.6534 -2.2207 43 1 10.5929 -5.4601 -0.7266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292907952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:27 Heat of formation + Delta-G solvation = 57.983875 kcal Electronic energy + Delta-G solvation = -24418.338748 eV Core-core repulsion = 20819.952484 eV Total energy + Delta-G solvation = -3598.386264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16011 -39.71380 -36.44818 -35.92668 -34.90441 -33.20029 -32.32827 -31.95621 -29.12600 -27.64369 -26.26085 -25.49602 -24.07342 -22.96493 -21.49066 -21.03038 -20.06018 -19.82394 -18.38247 -17.68630 -16.85491 -16.53372 -15.90745 -15.73572 -15.25763 -14.83867 -14.56186 -14.47759 -14.14515 -14.05052 -13.54779 -13.35731 -13.23492 -12.90645 -12.65286 -12.32813 -11.92906 -11.78788 -11.69756 -11.39707 -11.34695 -11.20842 -10.99658 -10.91767 -10.87414 -10.63259 -10.44245 -10.20669 -10.03680 -9.70036 -9.58216 -9.32954 -9.28396 -8.56887 -8.44553 -7.79932 -6.05718 -4.10551 0.57530 0.58362 1.22427 2.28850 2.76404 2.83422 3.29825 3.37428 3.42240 3.77569 4.03377 4.21964 4.45313 4.57555 4.63069 4.77073 4.86596 5.01873 5.10694 5.20494 5.25766 5.29190 5.29317 5.36164 5.43582 5.55085 5.61274 5.65276 5.81525 5.86752 5.93802 6.01964 6.02845 6.22028 6.44626 6.67154 6.80389 7.19675 7.39684 7.50051 7.90595 8.19044 8.32481 8.81556 8.90082 9.09181 9.54501 11.02359 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002779 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.794124 B =10072.148207 C =11136.299362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.177 4.177 3 C 0.134 3.866 4 N -0.597 5.597 5 C 0.262 3.738 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.689 3.311 15 O -0.515 6.515 16 N -0.640 5.640 17 C 0.269 3.731 18 N -0.271 5.271 19 N -0.220 5.220 20 C -0.006 4.006 21 C -0.031 4.031 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.154 4.154 25 S 0.074 5.926 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.415 0.585 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.956 -13.841 -19.683 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C 0.010 3.990 4 N -0.333 5.333 5 C 0.144 3.856 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.388 3.612 15 O -0.384 6.384 16 N -0.296 5.296 17 C -0.102 4.102 18 N -0.115 5.115 19 N -0.056 5.056 20 C -0.289 4.289 21 C -0.073 4.073 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.211 4.211 25 S 0.312 5.688 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.365 -13.601 -18.315 24.298 hybrid contribution -0.451 1.082 -0.275 1.204 sum 7.914 -12.520 -18.590 23.769 Atomic orbital electron populations 1.23848 0.95740 1.01973 0.99510 1.23433 0.96635 0.98775 1.00843 1.20592 0.93330 0.96056 0.88985 1.47649 1.08234 1.62890 1.14512 1.19309 0.95397 0.93699 0.77232 1.21423 1.40780 0.93223 1.01379 0.92431 1.24918 0.95001 0.98826 0.95246 1.69928 1.41882 1.36192 1.05164 0.86486 0.78562 0.84874 0.77441 1.20654 1.21023 1.19906 1.16030 0.83823 0.79544 0.81798 1.91072 1.51819 1.58144 1.37348 1.42647 1.08202 1.63633 1.15163 1.25696 0.92430 0.99048 0.93041 1.71613 0.95045 1.19388 1.25427 1.71424 1.12660 1.08708 1.12807 1.29776 0.98873 1.07404 0.92840 1.20158 0.91142 0.95414 1.00564 1.21670 0.98560 0.92955 1.02419 1.21516 0.97690 0.95869 1.00991 1.21773 1.01640 0.95737 1.01968 1.84543 1.09977 1.60573 1.13704 0.88072 0.88606 0.87809 0.88547 0.91725 0.94428 0.93541 0.92645 0.74611 0.89472 0.88287 0.90970 0.91584 0.91828 0.91602 0.92729 0.92721 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 14.32 29.01 0.42 -1.64 16 2 C -0.18 -2.34 9.85 -36.03 -0.35 -2.69 16 3 C 0.13 2.04 5.62 -5.19 -0.03 2.01 16 4 N -0.60 -12.48 2.44 -182.19 -0.44 -12.93 16 5 C 0.26 6.81 5.16 -5.20 -0.03 6.78 16 6 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 10 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.69 15.00 8.24 -86.92 -0.72 14.28 16 15 O -0.51 -13.96 14.60 5.29 0.08 -13.88 16 16 N -0.64 -10.57 5.27 -17.32 -0.09 -10.66 16 17 C 0.27 4.53 8.14 -87.05 -0.71 3.82 16 18 N -0.27 -5.52 9.73 29.97 0.29 -5.22 16 19 N -0.22 -3.85 11.65 33.58 0.39 -3.46 16 20 C -0.01 -0.07 7.05 -13.26 -0.09 -0.17 16 21 C -0.03 -0.25 5.84 -27.89 -0.16 -0.42 16 22 C -0.12 -0.87 5.20 -26.73 -0.14 -1.01 16 23 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 24 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 25 S 0.07 0.84 23.31 -107.50 -2.51 -1.67 16 26 H 0.10 1.18 7.84 -52.49 -0.41 0.76 16 27 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.10 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.10 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 31 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.41 5.07 6.55 -40.82 -0.27 4.80 16 35 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -36.11 380.73 -9.27 -45.38 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.41 Total: -0.49 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -2.03 Total: 5.98 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.88 Total: -58.09 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.11 -9.27 -45.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292907952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.362 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds