Wall clock time and date at job start Tue Mar 31 2020 13:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00352 * 5 4 3 7 7 H 1.08004 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00031 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46723 * 60.00877 * 10 8 6 12 12 H 1.48505 * 109.47172 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47468 * 300.00982 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21583 * 119.99947 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00097 * 0.26801 * 14 4 3 17 17 C 1.38774 * 120.00277 * 179.72744 * 16 14 4 18 18 N 1.31555 * 127.49988 * 180.02562 * 17 16 14 19 19 C 1.31250 * 116.82233 * 179.97438 * 18 17 16 20 20 C 1.50697 * 121.07091 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46727 * 59.99913 * 20 19 18 22 22 C 1.52998 * 109.47473 * 180.02562 * 20 19 18 23 23 C 1.53004 * 109.46771 * 300.00546 * 20 19 18 24 24 N 1.30166 * 117.86566 * 0.02562 * 19 18 17 25 25 S 1.69958 * 105.74515 * 359.73430 * 24 19 18 26 26 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00480 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 30 30 H 1.09001 * 109.47407 * 244.99820 * 3 2 1 31 31 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 32 32 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 33 33 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 34 34 H 0.97000 * 120.00112 * 359.73180 * 16 14 4 35 35 H 1.09009 * 109.46789 * 60.00420 * 21 20 19 36 36 H 1.09002 * 109.47123 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47530 * 300.00280 * 21 20 19 38 38 H 1.09003 * 109.46903 * 60.00117 * 22 20 19 39 39 H 1.08996 * 109.46824 * 179.97438 * 22 20 19 40 40 H 1.08995 * 109.46987 * 300.00260 * 22 20 19 41 41 H 1.09000 * 109.47382 * 59.99784 * 23 20 19 42 42 H 1.09005 * 109.46609 * 179.97438 * 23 20 19 43 43 H 1.08993 * 109.47085 * 299.99144 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5185 4.0667 3.6082 9 7 1.9591 3.4660 4.6357 10 14 2.8730 5.8995 3.6773 11 1 2.1380 6.5872 2.5855 12 1 2.4320 6.4399 4.9884 13 1 4.3310 6.1283 3.5131 14 6 4.2497 0.8661 0.9824 15 8 5.0218 0.8887 1.9213 16 7 4.6515 0.3808 -0.2090 17 6 5.9464 -0.0935 -0.3640 18 7 6.4908 -0.5949 -1.4516 19 6 7.7418 -0.9822 -1.3633 20 6 8.4594 -1.5708 -2.5505 21 6 8.4840 -0.5493 -3.6893 22 6 9.8933 -1.9281 -2.1541 23 6 7.7290 -2.8331 -3.0134 24 7 8.3424 -0.8425 -0.2169 25 16 7.1930 -0.1473 0.8243 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 1.4888 1.6967 2.5459 32 1 3.0989 1.3603 3.2260 33 1 1.7302 3.9747 5.4293 34 1 4.0356 0.3631 -0.9581 35 1 9.0043 0.3500 -3.3594 36 1 9.0035 -0.9748 -4.5479 37 1 7.4623 -0.2951 -3.9716 38 1 9.8753 -2.6560 -1.3429 39 1 10.4121 -2.3543 -3.0127 40 1 10.4137 -1.0291 -1.8240 41 1 6.7074 -2.5789 -3.2957 42 1 8.2479 -3.2586 -3.8724 43 1 7.7115 -3.5608 -2.2022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292994075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:44 Heat of formation + Delta-G solvation = 48.260383 kcal Electronic energy + Delta-G solvation = -25146.642617 eV Core-core repulsion = 21547.834711 eV Total energy + Delta-G solvation = -3598.807906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66239 -40.00451 -36.59538 -36.06081 -34.69198 -33.31300 -32.32824 -31.25685 -27.90357 -27.39925 -27.25771 -25.98966 -25.16460 -23.28805 -21.63741 -20.84457 -20.05333 -18.65625 -18.13800 -17.47769 -17.13295 -16.64259 -15.77423 -15.46543 -15.16517 -14.95787 -14.68368 -14.33730 -13.95800 -13.91838 -13.43039 -13.08397 -12.51669 -12.45553 -12.32416 -12.16729 -11.99714 -11.76500 -11.53805 -11.49752 -11.38131 -11.22985 -11.12576 -11.01143 -10.98091 -10.93355 -10.70406 -10.29418 -9.89040 -9.79188 -9.42935 -9.41664 -9.37932 -8.55894 -8.53378 -7.95852 -6.15265 -4.21097 0.73396 1.18574 1.99363 2.24042 2.52819 2.65891 3.26232 3.31544 3.33934 3.45236 3.95267 4.20992 4.37678 4.72080 4.83062 4.90518 4.99420 5.18716 5.20062 5.29879 5.38313 5.49608 5.51365 5.68622 5.70036 5.78001 5.78340 5.83351 5.92934 5.96824 6.01456 6.16341 6.22685 6.25360 6.34300 6.62890 6.74377 7.04441 7.19217 7.33161 7.76023 7.80130 8.06372 8.12246 8.62381 8.83800 9.44478 10.92749 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003364 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.426611 B = 8321.311844 C = 9394.548352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.178 4.178 3 C 0.132 3.868 4 N -0.586 5.586 5 C 0.261 3.739 6 C -0.535 4.535 7 H 0.058 0.942 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.693 3.307 15 O -0.543 6.543 16 N -0.626 5.626 17 C 0.312 3.688 18 N -0.562 5.562 19 C 0.295 3.705 20 C 0.022 3.978 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.135 4.135 24 N -0.523 5.523 25 S 0.322 5.678 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.266 0.734 34 H 0.417 0.583 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 -10.329 -15.923 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.008 3.992 4 N -0.319 5.319 5 C 0.142 3.858 6 C -0.573 4.573 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.393 3.607 15 O -0.416 6.416 16 N -0.280 5.280 17 C -0.066 4.066 18 N -0.295 5.295 19 C 0.004 3.996 20 C 0.016 3.984 21 C -0.193 4.193 22 C -0.190 4.190 23 C -0.193 4.193 24 N -0.357 5.357 25 S 0.460 5.540 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.257 0.743 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.508 -10.181 -13.998 18.492 hybrid contribution -0.914 0.973 -1.111 1.737 sum 5.594 -9.208 -15.109 18.557 Atomic orbital electron populations 1.23861 0.95726 1.02057 0.99175 1.23379 0.96640 0.98625 1.01119 1.20670 0.93308 0.96358 0.88860 1.47634 1.07826 1.61532 1.14918 1.19399 0.95694 0.93842 0.76828 1.21359 1.41343 0.93066 1.01570 0.92351 1.24904 0.94810 0.98885 0.95188 1.69912 1.41480 1.36437 1.05171 0.86541 0.78945 0.84606 0.77254 1.20206 1.21086 1.20076 1.15924 0.84293 0.79293 0.81165 1.90926 1.52100 1.60742 1.37848 1.42211 1.08744 1.62017 1.15050 1.24769 0.92454 0.94201 0.95150 1.67202 1.11800 1.23401 1.27111 1.22814 0.86451 0.96031 0.94311 1.19182 0.94430 0.95492 0.89262 1.21832 1.02917 0.98020 0.96575 1.21757 0.93625 1.02385 1.01223 1.21829 1.00937 0.95504 1.01032 1.77316 1.26339 1.26093 1.05941 1.86071 0.96365 1.54731 1.16875 0.88033 0.88507 0.87669 0.88255 0.91236 0.94128 0.93318 0.92463 0.74263 0.92654 0.91720 0.91444 0.91964 0.92142 0.91943 0.91464 0.91726 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 14.32 29.02 0.42 -1.53 16 2 C -0.18 -2.25 9.85 -36.02 -0.35 -2.60 16 3 C 0.13 1.89 5.62 -5.19 -0.03 1.86 16 4 N -0.59 -11.30 2.44 -182.19 -0.44 -11.74 16 5 C 0.26 6.30 5.16 -5.19 -0.03 6.28 16 6 C -0.53 -14.26 9.39 -34.44 -0.32 -14.59 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 10 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.69 13.55 8.24 -86.92 -0.72 12.83 16 15 O -0.54 -12.58 13.67 5.29 0.07 -12.50 16 16 N -0.63 -9.85 5.26 -16.81 -0.09 -9.94 16 17 C 0.31 5.15 8.51 -85.98 -0.73 4.42 16 18 N -0.56 -8.59 10.30 -14.47 -0.15 -8.74 16 19 C 0.29 4.33 6.07 -159.04 -0.97 3.36 16 20 C 0.02 0.24 0.95 -155.66 -0.15 0.09 16 21 C -0.13 -1.31 8.39 37.16 0.31 -1.00 16 22 C -0.13 -1.33 7.73 37.16 0.29 -1.04 16 23 C -0.13 -1.28 8.39 37.16 0.31 -0.97 16 24 N -0.52 -8.46 11.01 29.54 0.33 -8.13 16 25 S 0.32 5.64 21.17 -107.50 -2.28 3.37 16 26 H 0.10 1.12 7.84 -52.48 -0.41 0.71 16 27 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 29 H 0.10 1.47 7.72 -51.93 -0.40 1.06 16 30 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 31 H 0.04 0.99 8.07 -51.93 -0.42 0.58 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.42 5.30 6.55 -40.82 -0.27 5.03 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -30.71 375.33 -9.65 -40.36 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.40 Total: 1.42 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -2.07 Total: 8.80 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.38 Total: -63.17 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -2.28 Total: 3.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.71 -9.65 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292994075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.619 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds