Wall clock time and date at job start Tue Mar 31 2020 13:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00037 * 2 1 4 4 N 1.46495 * 109.47099 * 125.00077 * 3 2 1 5 5 C 1.46498 * 120.00024 * 269.99820 * 4 3 2 6 6 C 1.50693 * 109.47587 * 270.00160 * 5 4 3 7 7 H 1.08002 * 119.99779 * 0.02562 * 6 5 4 8 8 C 1.37884 * 120.00455 * 179.97438 * 6 5 4 9 9 N 1.31505 * 119.99630 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99838 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47874 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47136 * 119.99991 * 10 8 6 13 13 H 1.48504 * 109.47120 * 239.99658 * 10 8 6 14 14 C 1.34772 * 120.00322 * 90.00144 * 4 3 2 15 15 O 1.21278 * 120.00775 * 179.97438 * 14 4 3 16 16 C 1.50710 * 119.99638 * 359.97438 * 14 4 3 17 17 N 1.46503 * 109.46897 * 179.97438 * 16 14 4 18 18 C 1.36530 * 127.14435 * 270.14538 * 17 16 14 19 19 S 1.76200 * 126.48303 * 0.02562 * 18 17 16 20 20 N 1.31289 * 107.03454 * 180.23188 * 18 17 16 21 21 N 1.28526 * 109.85218 * 359.77532 * 20 18 17 22 22 C 1.30302 * 110.07912 * 359.97438 * 21 20 18 23 23 C 1.50697 * 126.33874 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47466 * 90.02582 * 23 22 21 25 25 C 1.53000 * 109.47060 * 180.02562 * 24 23 22 26 26 H 1.08002 * 120.00269 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00281 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99865 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47188 * 4.99869 * 3 2 1 30 30 H 1.09002 * 109.47163 * 245.00522 * 3 2 1 31 31 H 1.09004 * 109.46931 * 30.00389 * 5 4 3 32 32 H 1.08999 * 109.47216 * 150.00195 * 5 4 3 33 33 H 0.97004 * 119.99991 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.46847 * 60.00249 * 16 14 4 35 35 H 1.09001 * 109.46726 * 299.99740 * 16 14 4 36 36 H 1.40998 * 100.00142 * 270.24095 * 19 18 17 37 37 H 1.09002 * 109.47120 * 330.02335 * 23 22 21 38 38 H 1.08998 * 109.46862 * 210.03137 * 23 22 21 39 39 H 1.09002 * 109.47153 * 59.99773 * 24 23 22 40 40 H 1.09001 * 109.46832 * 299.99964 * 24 23 22 41 41 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 42 42 H 1.09001 * 109.47194 * 299.99650 * 25 24 23 43 43 H 1.08992 * 109.47399 * 59.99823 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3435 2.4804 7 1 3.3032 3.8370 1.6365 8 6 2.5184 4.0667 3.6083 9 7 1.9581 3.4661 4.6353 10 14 2.8715 5.8997 3.6768 11 1 3.5005 6.3307 2.4025 12 1 1.6008 6.6414 3.8778 13 1 3.7945 6.1842 4.8048 14 6 4.2496 0.8662 0.9824 15 8 5.0199 0.8887 1.9188 16 6 4.6968 0.3173 -0.3481 17 7 6.0915 -0.1206 -0.2517 18 6 7.2087 0.6263 -0.4926 19 16 7.2522 2.3181 -0.9831 20 7 8.2444 -0.1557 -0.2940 21 7 7.8465 -1.3267 0.0557 22 6 6.5447 -1.3617 0.1014 23 6 5.6958 -2.5515 0.4683 24 6 5.4457 -2.5536 1.9777 25 6 4.5842 -3.7619 2.3501 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 1.4887 1.6966 2.5459 32 1 3.0989 1.3603 3.2259 33 1 1.7292 3.9747 5.4289 34 1 4.6119 1.0937 -1.1084 35 1 4.0677 -0.5297 -0.6216 36 1 7.2228 2.1675 -2.3847 37 1 6.2127 -3.4681 0.1843 38 1 4.7429 -2.4939 -0.0579 39 1 4.9287 -1.6369 2.2616 40 1 6.3986 -2.6112 2.5037 41 1 4.4057 -3.7632 3.4255 42 1 3.6313 -3.7048 1.8241 43 1 5.1015 -4.6783 2.0663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293778632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:50 Heat of formation + Delta-G solvation = 65.342602 kcal Electronic energy + Delta-G solvation = -26107.138351 eV Core-core repulsion = 22509.071185 eV Total energy + Delta-G solvation = -3598.067166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.97204 -39.38976 -36.04265 -35.47277 -34.65126 -33.30985 -32.24827 -30.88641 -29.19622 -27.33674 -26.91028 -25.59805 -23.28805 -22.62038 -22.14816 -20.79598 -20.14603 -19.02399 -18.04073 -17.34662 -16.75488 -16.58531 -15.79824 -15.42893 -15.26497 -15.06643 -14.82770 -14.59290 -14.41250 -14.08747 -13.50522 -13.31908 -12.84387 -12.69325 -12.39474 -12.08584 -11.92193 -11.91937 -11.68091 -11.44679 -11.36675 -11.22971 -11.21346 -10.96609 -10.76230 -10.73194 -10.61553 -10.51273 -10.26187 -9.73825 -9.40102 -9.16509 -9.09206 -8.51129 -8.41815 -7.93395 -6.12406 -4.17397 0.99985 1.28749 2.22295 2.33419 2.44709 2.90592 2.97637 3.26076 3.35009 3.38248 3.67884 4.15854 4.38084 4.44944 4.59968 4.66137 4.77659 4.92277 5.03356 5.13490 5.17928 5.21376 5.23626 5.35344 5.43858 5.51629 5.67879 5.70060 5.82725 5.89197 5.97389 6.04184 6.14702 6.32062 6.55562 6.58652 6.70325 6.87942 7.26286 7.35002 7.83045 8.09015 8.12481 8.58815 8.65095 8.88169 9.48274 10.95902 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.004881 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.165110 B = 5734.905320 C = 6873.178228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.177 4.177 3 C 0.131 3.869 4 N -0.584 5.584 5 C 0.250 3.750 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.495 3.505 15 O -0.513 6.513 16 C 0.078 3.922 17 N -0.438 5.438 18 C 0.153 3.847 19 S 0.005 5.995 20 N -0.242 5.242 21 N -0.293 5.293 22 C 0.213 3.787 23 C -0.033 4.033 24 C -0.124 4.124 25 C -0.147 4.147 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -10.460 -14.031 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C 0.007 3.993 4 N -0.315 5.315 5 C 0.131 3.869 6 C -0.567 4.567 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.278 3.722 15 O -0.388 6.388 16 C -0.050 4.050 17 N -0.129 5.129 18 C -0.222 4.222 19 S 0.156 5.844 20 N -0.086 5.086 21 N -0.136 5.136 22 C -0.056 4.056 23 C -0.073 4.073 24 C -0.163 4.163 25 C -0.205 4.205 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.034 -9.895 -13.256 16.574 hybrid contribution -1.353 0.468 -0.574 1.543 sum -0.319 -9.427 -13.829 16.740 Atomic orbital electron populations 1.23864 0.95805 1.02020 0.99350 1.23362 0.96545 0.98649 1.01026 1.20676 0.93388 0.95932 0.89269 1.48211 1.09642 1.59607 1.14057 1.19345 0.95493 0.94003 0.78037 1.21427 1.40791 0.93043 1.01471 0.92193 1.24918 0.94893 0.98853 0.95276 1.69932 1.41852 1.36208 1.05207 0.86455 0.77932 0.84811 0.78344 1.19627 1.20967 1.20814 1.20028 0.83344 0.80054 0.88748 1.90779 1.52074 1.55262 1.40730 1.22035 0.79265 1.03173 1.00506 1.46537 1.07359 1.09893 1.49139 1.25793 0.84971 0.99643 1.11752 1.87524 1.96952 0.92347 1.07625 1.74720 1.23442 0.97033 1.13386 1.74069 1.07437 1.13646 1.18404 1.25129 0.92791 0.87554 1.00113 1.20192 0.97072 0.91908 0.98091 1.21550 1.01554 1.00084 0.93095 1.21729 0.99443 0.97354 1.01946 0.88598 0.88079 0.87897 0.88725 0.91026 0.94655 0.93815 0.92690 0.85870 0.86177 0.94589 0.88093 0.90150 0.90618 0.90991 0.92114 0.92732 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 14.32 29.02 0.42 -1.40 16 2 C -0.18 -1.99 9.74 -36.03 -0.35 -2.34 16 3 C 0.13 1.75 5.65 -5.20 -0.03 1.72 16 4 N -0.58 -10.75 2.44 -176.44 -0.43 -11.19 16 5 C 0.25 6.03 5.16 -5.20 -0.03 6.00 16 6 C -0.53 -14.16 9.39 -34.44 -0.32 -14.48 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 10 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.50 9.06 7.71 -10.98 -0.08 8.97 16 15 O -0.51 -12.03 15.30 5.56 0.09 -11.94 16 16 C 0.08 1.01 4.92 -5.19 -0.03 0.99 16 17 N -0.44 -6.71 2.30 -114.81 -0.26 -6.98 16 18 C 0.15 2.58 8.37 -88.34 -0.74 1.84 16 19 S 0.01 0.08 25.78 -107.50 -2.77 -2.69 16 20 N -0.24 -4.49 12.23 30.68 0.38 -4.12 16 21 N -0.29 -5.22 12.18 32.99 0.40 -4.82 16 22 C 0.21 3.23 7.32 -153.99 -1.13 2.11 16 23 C -0.03 -0.37 5.59 -27.89 -0.16 -0.52 16 24 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 25 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 26 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.10 1.06 7.84 -52.48 -0.41 0.65 16 28 H 0.10 1.02 7.83 -52.49 -0.41 0.61 16 29 H 0.09 1.34 7.72 -51.93 -0.40 0.94 16 30 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 31 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.12 1.32 7.12 -51.93 -0.37 0.96 16 35 H 0.12 1.13 6.88 -51.93 -0.36 0.77 16 36 H 0.09 0.92 9.55 96.90 0.93 1.85 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.70 7.26 -51.93 -0.38 0.32 16 39 H 0.08 1.21 7.40 -51.93 -0.38 0.82 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -34.53 382.25 -8.47 -43.00 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.01 Total: -0.04 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.33 Total: 1.71 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.82 Total: -52.08 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.77 Total: -2.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.53 -8.47 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293778632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.346 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds