Wall clock time and date at job start Tue Mar 31 2020 14:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99730 * 2 1 4 4 N 1.46504 * 109.46962 * 124.99740 * 3 2 1 5 5 C 1.46503 * 119.99935 * 269.99532 * 4 3 2 6 6 C 1.50697 * 109.47112 * 270.00326 * 5 4 3 7 7 H 1.08001 * 120.00270 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99423 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00097 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47873 * 89.99615 * 10 8 6 12 12 H 1.48499 * 109.46916 * 209.99727 * 10 8 6 13 13 H 1.48506 * 109.47327 * 329.99086 * 10 8 6 14 14 C 1.34776 * 119.99896 * 90.00162 * 4 3 2 15 15 O 1.21589 * 120.00079 * 179.97438 * 14 4 3 16 16 N 1.34772 * 120.00321 * 359.97438 * 14 4 3 17 17 C 1.46500 * 120.00341 * 179.97438 * 16 14 4 18 18 H 1.09003 * 109.46756 * 35.00840 * 17 16 14 19 19 C 1.50702 * 109.47266 * 154.99966 * 17 16 14 20 20 C 1.38234 * 120.00271 * 220.00163 * 19 17 16 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 17 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 39.98291 * 19 17 16 25 25 C 1.52993 * 109.47545 * 275.00706 * 17 16 14 26 26 F 1.39903 * 109.47106 * 304.99541 * 25 17 16 27 27 F 1.39901 * 109.47671 * 64.99280 * 25 17 16 28 28 H 1.07998 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00085 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00341 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47364 * 4.99881 * 3 2 1 32 32 H 1.09003 * 109.47030 * 244.99505 * 3 2 1 33 33 H 1.08996 * 109.46780 * 30.00636 * 5 4 3 34 34 H 1.09002 * 109.46670 * 150.00176 * 5 4 3 35 35 H 0.97001 * 119.99582 * 180.02562 * 9 8 6 36 36 H 0.96999 * 120.00011 * 0.02562 * 16 14 4 37 37 H 1.08001 * 119.99769 * 359.97438 * 20 19 17 38 38 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00489 * 0.02562 * 24 19 17 42 42 H 1.08999 * 109.47670 * 184.99752 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5587 1.8651 2.4249 6 6 2.8440 3.3438 2.4803 7 1 3.3038 3.8371 1.6367 8 6 2.5190 4.0668 3.6085 9 7 1.9596 3.4659 4.6360 10 14 2.8721 5.8998 3.6770 11 1 1.6988 6.6496 3.1610 12 1 3.1368 6.3007 5.0822 13 1 4.0616 6.2064 2.8425 14 6 4.2496 0.8663 0.9825 15 8 5.0218 0.8890 1.9214 16 7 4.6497 0.3755 -0.2072 17 6 6.0150 -0.1301 -0.3693 18 1 6.3381 -0.6071 0.5561 19 6 6.0483 -1.1361 -1.4909 20 6 6.8136 -2.2810 -1.3702 21 6 6.8436 -3.2039 -2.3988 22 6 6.1081 -2.9823 -3.5480 23 6 5.3420 -1.8379 -3.6684 24 6 5.3133 -0.9141 -2.6404 25 6 6.9537 1.0322 -0.6987 26 9 6.4746 1.7146 -1.8221 27 9 7.0105 1.9088 0.3902 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4886 1.6967 2.5459 34 1 3.0988 1.3605 3.2260 35 1 1.7306 3.9746 5.4296 36 1 4.0338 0.3577 -0.9564 37 1 7.3879 -2.4543 -0.4721 38 1 7.4411 -4.0986 -2.3043 39 1 6.1350 -3.7012 -4.3536 40 1 4.7676 -1.6645 -4.5664 41 1 4.7155 -0.0196 -2.7349 42 1 7.9515 0.6459 -0.9065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296924176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:36 Heat of formation + Delta-G solvation = -73.237936 kcal Electronic energy + Delta-G solvation = -28132.506352 eV Core-core repulsion = 23942.296745 eV Total energy + Delta-G solvation = -4190.209606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.64941 -46.63342 -40.01520 -39.05060 -35.88382 -34.99554 -33.10659 -32.15804 -31.43666 -31.02430 -28.47874 -27.20750 -25.41756 -23.83459 -23.06191 -22.55454 -21.01860 -19.98734 -19.35631 -17.95795 -17.37002 -16.89393 -16.74859 -16.55110 -16.31165 -15.78337 -15.20466 -15.00868 -14.68686 -14.36523 -14.05861 -13.81792 -13.61375 -13.48712 -13.25190 -13.07290 -13.00607 -12.80752 -12.54469 -12.34117 -12.09029 -11.70523 -11.46784 -11.28035 -11.22982 -11.18434 -11.02045 -10.82677 -10.52837 -10.10990 -9.58804 -9.31140 -9.19822 -9.17959 -9.06758 -8.77369 -8.35655 -7.59792 -5.96636 -4.00321 0.97746 1.12685 2.44058 3.19149 3.35693 3.42249 3.43933 3.49342 3.89362 4.04098 4.19069 4.42702 4.48529 4.59790 4.61299 4.73957 4.84340 4.92883 5.12095 5.20547 5.23780 5.30879 5.37357 5.40840 5.52800 5.58786 5.65495 5.77144 6.00482 6.15363 6.19384 6.23061 6.24269 6.67716 6.72100 6.76878 6.82470 6.96807 7.43491 7.60782 7.75799 8.02391 8.32254 8.69647 9.01098 9.37176 9.65006 11.11293 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.003998 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.798060 B = 7002.158076 C = 8050.123512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C 0.139 3.861 4 N -0.605 5.605 5 C 0.264 3.736 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.702 3.298 15 O -0.571 6.571 16 N -0.748 5.748 17 C 0.162 3.838 18 H 0.122 0.878 19 C -0.098 4.098 20 C -0.101 4.101 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.098 4.098 25 C 0.251 3.749 26 F -0.205 7.205 27 F -0.183 7.183 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.395 0.605 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 -13.566 -18.191 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.014 3.986 4 N -0.340 5.340 5 C 0.144 3.856 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.403 3.597 15 O -0.447 6.447 16 N -0.408 5.408 17 C 0.054 3.946 18 H 0.140 0.860 19 C -0.099 4.099 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.116 4.116 25 C 0.196 3.804 26 F -0.186 7.186 27 F -0.164 7.164 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.232 0.768 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.720 -13.424 -17.223 22.848 hybrid contribution -0.231 1.121 -0.307 1.185 sum 6.489 -12.303 -17.531 22.379 Atomic orbital electron populations 1.23804 0.95807 1.01736 1.00529 1.23461 0.96470 0.99010 0.99930 1.20485 0.93166 0.95476 0.89432 1.47498 1.08948 1.63542 1.13963 1.19187 0.95053 0.93524 0.77805 1.21484 1.40040 0.93469 1.01191 0.92479 1.24914 0.95178 0.98658 0.95332 1.69941 1.42382 1.36042 1.05185 0.86516 0.78587 0.85167 0.77284 1.20751 1.21150 1.19869 1.15898 0.83054 0.78425 0.82283 1.90914 1.52831 1.61756 1.39211 1.45305 1.12506 1.69388 1.13581 1.20566 0.84022 0.91202 0.98840 0.85979 1.19679 0.99447 0.95784 0.94968 1.21054 0.98502 0.93087 0.99278 1.21136 0.99659 0.99276 0.93708 1.21226 0.96748 0.97448 0.97856 1.21156 0.99315 0.94252 0.98838 1.21033 0.98433 0.99277 0.92864 1.22385 0.98878 0.85599 0.73577 1.92944 1.90512 1.82311 1.52857 1.93122 1.97351 1.71302 1.54593 0.88254 0.88826 0.87876 0.89221 0.91732 0.94959 0.93821 0.92835 0.76820 0.85379 0.85717 0.85959 0.85719 0.85738 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 14.32 29.02 0.42 -1.96 16 2 C -0.17 -2.45 9.85 -36.02 -0.35 -2.81 16 3 C 0.14 2.33 5.61 -5.19 -0.03 2.30 16 4 N -0.61 -13.21 2.44 -182.18 -0.44 -13.65 16 5 C 0.26 7.06 5.16 -5.19 -0.03 7.04 16 6 C -0.52 -15.24 9.39 -34.44 -0.32 -15.56 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.78 5.46 -17.81 -0.10 1.68 16 9 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 10 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.70 15.19 7.93 -86.92 -0.69 14.50 16 15 O -0.57 -14.79 14.49 5.29 0.08 -14.71 16 16 N -0.75 -12.04 4.73 -59.82 -0.28 -12.33 16 17 C 0.16 2.21 2.46 -69.08 -0.17 2.04 16 18 H 0.12 1.76 7.44 -51.93 -0.39 1.37 16 19 C -0.10 -1.05 4.93 -104.62 -0.52 -1.56 16 20 C -0.10 -0.91 9.67 -39.59 -0.38 -1.29 16 21 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 22 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.10 -0.97 8.44 -39.58 -0.33 -1.31 16 25 C 0.25 3.54 4.95 37.15 0.18 3.72 16 26 F -0.20 -3.02 16.36 2.25 0.04 -2.98 16 27 F -0.18 -3.52 15.85 2.25 0.04 -3.48 16 28 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 29 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.10 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.09 1.56 7.72 -51.93 -0.40 1.16 16 32 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.39 5.45 4.60 -40.82 -0.19 5.26 16 37 H 0.13 0.96 8.04 -52.49 -0.42 0.54 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.12 1.22 6.82 -52.49 -0.36 0.87 16 42 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -35.44 365.18 -8.26 -43.70 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.38 Total: 4.03 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -3.52 Total: 2.81 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.01 Total: -52.37 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.07 Total: -6.46 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.44 -8.26 -43.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296924176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.537 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds