Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47429 * 2 1 4 4 C 1.50701 * 109.47079 * 239.99888 * 2 1 3 5 5 H 1.07999 * 120.00064 * 239.99944 * 4 2 1 6 6 C 1.37882 * 119.99948 * 60.00191 * 4 2 1 7 7 N 1.31511 * 119.99623 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99873 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46879 * 90.00523 * 8 6 4 10 10 H 1.48498 * 109.46794 * 210.00002 * 8 6 4 11 11 H 1.48498 * 109.47583 * 330.00432 * 8 6 4 12 12 C 1.53006 * 109.46966 * 120.00423 * 2 1 3 13 13 N 1.46497 * 109.46844 * 299.99537 * 12 2 1 14 14 C 1.34774 * 120.00140 * 179.97438 * 13 12 2 15 15 O 1.21583 * 119.99691 * 5.02133 * 14 13 12 16 16 N 1.34778 * 120.00427 * 185.01760 * 14 13 12 17 17 C 1.46531 * 124.97560 * 354.97075 * 16 14 13 18 18 C 1.53735 * 105.20319 * 179.75489 * 17 16 14 19 19 C 1.51227 * 104.58434 * 0.33428 * 18 17 16 20 20 C 1.38578 * 108.55538 * 359.65378 * 19 18 17 21 21 C 1.39570 * 119.08554 * 180.24667 * 20 19 18 22 22 C 1.38118 * 120.31670 * 359.97438 * 21 20 19 23 23 F 1.35096 * 119.89713 * 180.02562 * 22 21 20 24 24 C 1.38441 * 120.19977 * 0.02562 * 22 21 20 25 25 C 1.38375 * 130.94734 * 179.97438 * 19 18 17 26 26 F 1.35108 * 119.93754 * 359.69012 * 25 19 18 27 27 H 1.09001 * 109.46990 * 300.00207 * 1 2 3 28 28 H 1.09004 * 109.47011 * 59.99817 * 1 2 3 29 29 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46855 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47252 * 300.00313 * 3 2 1 32 32 H 1.09001 * 109.47203 * 59.99923 * 3 2 1 33 33 H 0.97005 * 119.99860 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46810 * 180.02562 * 12 2 1 35 35 H 1.09000 * 109.47264 * 59.99752 * 12 2 1 36 36 H 0.97001 * 120.00350 * 0.02562 * 13 12 2 37 37 H 1.09001 * 110.29935 * 298.90932 * 17 16 14 38 38 H 1.09006 * 110.30099 * 60.94703 * 17 16 14 39 39 H 1.09003 * 110.49554 * 241.52106 * 18 17 16 40 40 H 1.09001 * 110.33884 * 119.07060 * 18 17 16 41 41 H 1.07999 * 119.83864 * 180.02562 * 21 20 19 42 42 H 1.07992 * 120.11324 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.6485 -1.4242 3.7827 16 7 1.3465 0.0816 4.7681 17 6 0.4921 1.2720 4.7652 18 6 0.1448 1.5226 6.2417 19 6 0.8602 0.4224 6.9932 20 6 1.5308 -0.3730 6.0777 21 6 2.2654 -1.4665 6.5389 22 6 2.3216 -1.7489 7.8897 23 9 3.0357 -2.8091 8.3268 24 6 1.6485 -0.9487 8.7970 25 6 0.9170 0.1368 8.3459 26 9 0.2581 0.9194 9.2285 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7096 1.1619 -3.4844 34 1 3.1300 -0.7210 1.2495 35 1 1.6766 -1.7490 1.2492 36 1 0.9938 0.7578 2.3564 37 1 1.0313 2.1236 4.3503 38 1 -0.4158 1.0844 4.1917 39 1 -0.9317 1.4518 6.3979 40 1 0.5121 2.4992 6.5568 41 1 2.7930 -2.0942 5.8361 42 1 1.6931 -1.1710 9.8529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335589961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -88.326529 kcal Electronic energy + Delta-G solvation = -27373.274063 eV Core-core repulsion = 23182.410166 eV Total energy + Delta-G solvation = -4190.863897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.22322 -49.14017 -41.33482 -38.97846 -36.63418 -36.23373 -33.50263 -32.33870 -31.10503 -29.90956 -28.89021 -25.84810 -25.82563 -25.15732 -23.61651 -23.37715 -22.01733 -20.40677 -19.10765 -18.55500 -17.81928 -16.81683 -16.75858 -16.34859 -15.94797 -15.91136 -15.76484 -15.49743 -15.38862 -14.77940 -14.69638 -14.52970 -13.99718 -13.60610 -13.16393 -13.12746 -12.94832 -12.50737 -12.42155 -12.30242 -12.13757 -12.03638 -11.86110 -11.49092 -11.28477 -10.94346 -10.75281 -10.49529 -10.33201 -10.29394 -10.06014 -9.74090 -9.44287 -8.88828 -8.87985 -8.69814 -8.44420 -8.05650 -6.09339 -4.19604 0.72998 0.82105 2.29236 2.94184 3.24358 3.31701 3.35610 3.41213 3.67863 3.80380 4.10646 4.17066 4.27042 4.37651 4.67018 4.71529 4.80598 5.01898 5.17956 5.19649 5.36542 5.50440 5.54541 5.63009 5.73869 5.89455 6.04218 6.11752 6.21429 6.38232 6.58414 6.65047 6.71066 6.77867 6.85050 6.91887 6.98626 7.25568 7.46079 7.62272 7.91799 7.95326 8.07077 8.29762 8.58211 8.81013 9.46737 10.92221 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.002734 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.470876 B =10240.785329 C =11141.933843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.146 3.854 13 N -0.718 5.718 14 C 0.708 3.292 15 O -0.570 6.570 16 N -0.567 5.567 17 C 0.095 3.905 18 C -0.073 4.073 19 C -0.199 4.199 20 C 0.242 3.758 21 C -0.185 4.185 22 C 0.161 3.839 23 F -0.128 7.128 24 C -0.225 4.225 25 C 0.174 3.826 26 F -0.130 7.130 27 H 0.004 0.996 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.004 0.996 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 3.051 19.287 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.024 3.976 13 N -0.372 5.372 14 C 0.410 3.590 15 O -0.446 6.446 16 N -0.292 5.292 17 C -0.027 4.027 18 C -0.110 4.110 19 C -0.204 4.204 20 C 0.142 3.858 21 C -0.208 4.208 22 C 0.141 3.859 23 F -0.106 7.106 24 C -0.246 4.246 25 C 0.154 3.846 26 F -0.108 7.108 27 H 0.023 0.977 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.179 0.821 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.613 2.456 18.956 19.292 hybrid contribution 0.046 -0.117 -0.680 0.692 sum -2.567 2.340 18.276 18.603 Atomic orbital electron populations 1.21839 0.97698 0.99266 1.00043 1.18374 0.92842 0.92821 0.90351 1.21835 0.98711 0.98258 1.00036 1.20961 1.31685 1.12214 0.89754 0.92311 1.24873 0.94790 0.94881 0.98891 1.69794 1.36621 1.22655 1.23347 0.86552 0.79371 0.79385 0.82471 1.20671 1.21232 1.19846 1.21772 0.98392 0.95538 0.81932 1.45607 1.54760 1.32763 1.04080 1.15764 0.80892 0.82349 0.80022 1.90892 1.37978 1.30702 1.85066 1.45218 1.50648 1.29688 1.03645 1.22241 0.95047 0.87305 0.98095 1.20965 1.01174 0.97367 0.91480 1.19834 1.06840 1.02065 0.91702 1.17386 0.92906 0.92197 0.83314 1.20881 1.04982 1.00233 0.94666 1.16758 0.92664 0.85261 0.91266 1.91538 1.75569 1.53539 1.89947 1.20765 1.04624 0.97927 1.01307 1.16277 0.93883 0.89976 0.84495 1.91517 1.78487 1.72946 1.67863 0.97692 0.89470 0.95334 0.95307 0.89466 0.97695 0.92928 0.92332 0.92485 0.76674 0.89294 0.89287 0.88650 0.88687 0.82072 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.85 8.01 -34.44 -0.28 -13.13 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -22.87 9.35 55.43 0.52 -22.35 16 8 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.15 2.95 4.51 -4.04 -0.02 2.93 16 13 N -0.72 -12.14 4.91 -65.22 -0.32 -12.46 16 14 C 0.71 12.12 8.42 -86.92 -0.73 11.39 16 15 O -0.57 -11.58 14.53 5.29 0.08 -11.50 16 16 N -0.57 -7.73 3.13 -118.27 -0.37 -8.10 16 17 C 0.10 0.89 6.34 -3.64 -0.02 0.87 16 18 C -0.07 -0.59 6.93 -27.24 -0.19 -0.77 16 19 C -0.20 -2.17 6.21 -104.19 -0.65 -2.81 16 20 C 0.24 3.21 6.62 -83.58 -0.55 2.66 16 21 C -0.19 -2.56 9.43 -39.13 -0.37 -2.93 16 22 C 0.16 1.93 7.28 -39.55 -0.29 1.64 16 23 F -0.13 -1.56 17.26 2.25 0.04 -1.53 16 24 C -0.23 -2.30 10.02 -39.43 -0.39 -2.70 16 25 C 0.17 1.82 7.29 -39.45 -0.29 1.53 16 26 F -0.13 -1.30 17.26 2.25 0.04 -1.26 16 27 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 33 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 5.93 5.10 -40.82 -0.21 5.73 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.16 2.54 6.29 -52.49 -0.33 2.21 16 42 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -27.77 346.64 -8.39 -36.16 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.23 Total: 4.12 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.35 Total: -3.51 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.17 Total: -42.91 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.77 -8.39 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335589961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.166 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds