Wall clock time and date at job start Tue Mar 31 2020 13:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 C 1.52995 * 109.46994 * 119.99769 * 2 1 3 5 5 C 1.53006 * 109.47111 * 64.99797 * 4 2 1 6 6 N 1.46502 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00171 * 270.00041 * 6 5 4 8 8 C 1.50696 * 109.47329 * 270.00120 * 7 6 5 9 9 H 1.08005 * 119.99794 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00064 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00071 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46878 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47089 * 119.99888 * 12 10 8 15 15 H 1.48496 * 109.47258 * 240.00000 * 12 10 8 16 16 C 1.34776 * 119.99587 * 89.99850 * 6 5 4 17 17 O 1.21285 * 119.99863 * 179.97438 * 16 6 5 18 18 C 1.50695 * 120.00456 * 0.02562 * 16 6 5 19 19 C 1.50694 * 109.47575 * 179.97438 * 18 16 6 20 20 C 1.38233 * 119.60308 * 124.99717 * 19 18 16 21 21 C 1.38613 * 119.17625 * 180.02562 * 20 19 18 22 22 C 1.38780 * 118.40577 * 0.25575 * 21 20 19 23 23 Cl 1.73608 * 120.42624 * 179.72626 * 22 21 20 24 24 C 1.38302 * 119.13930 * 359.50003 * 22 21 20 25 25 N 1.31846 * 119.60674 * 305.02221 * 19 18 16 26 26 H 1.09004 * 109.46919 * 60.00153 * 1 2 3 27 27 H 1.08993 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47065 * 300.00460 * 1 2 3 29 29 H 1.09007 * 109.47179 * 239.99834 * 2 1 3 30 30 H 1.09004 * 109.46842 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47046 * 299.99769 * 3 2 1 32 32 H 1.08994 * 109.47474 * 59.99790 * 3 2 1 33 33 H 1.09004 * 109.47440 * 305.00032 * 4 2 1 34 34 H 1.08996 * 109.47406 * 184.99514 * 4 2 1 35 35 H 1.09003 * 109.46594 * 60.00350 * 5 4 2 36 36 H 1.08996 * 109.47489 * 300.00003 * 5 4 2 37 37 H 1.09000 * 109.47142 * 30.00316 * 7 6 5 38 38 H 1.08998 * 109.47169 * 149.99849 * 7 6 5 39 39 H 0.97001 * 120.00236 * 180.02562 * 11 10 8 40 40 H 1.09004 * 109.47071 * 59.99079 * 18 16 6 41 41 H 1.08995 * 109.46890 * 299.99796 * 18 16 6 42 42 H 1.08002 * 120.41515 * 0.04798 * 20 19 18 43 43 H 1.08002 * 120.79267 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.62475 * 180.23223 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 7 2.1240 -2.8862 2.3840 7 6 3.4522 -3.5042 2.3815 8 6 3.3414 -4.9313 1.9102 9 1 2.3778 -5.3374 1.6400 10 6 4.4699 -5.7188 1.8250 11 7 5.6432 -5.2243 2.1545 12 14 4.3324 -7.4880 1.2415 13 1 2.9132 -7.7988 0.9338 14 1 5.1551 -7.6714 0.0189 15 1 4.8195 -8.4000 2.3074 16 6 1.3517 -2.9529 3.4865 17 8 1.7562 -3.5251 4.4764 18 6 -0.0148 -2.3177 3.4889 19 6 -0.6668 -2.5335 4.8303 20 6 -1.1277 -1.4460 5.5484 21 6 -1.7255 -1.6547 6.7815 22 6 -1.8332 -2.9562 7.2512 23 17 -2.5662 -3.2770 8.7918 24 6 -1.3532 -3.9945 6.4738 25 7 -0.7904 -3.7573 5.3050 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0699 -2.6550 0.3003 36 1 0.5489 -2.2724 1.1421 37 1 4.1095 -2.9502 1.7112 38 1 3.8635 -3.4857 3.3907 39 1 6.4372 -5.7782 2.0942 40 1 -0.6278 -2.7713 2.7101 41 1 0.0812 -1.2487 3.2991 42 1 -1.0236 -0.4462 5.1536 43 1 -2.0945 -0.8240 7.3647 44 1 -1.4364 -5.0107 6.8301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339928630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:30 Heat of formation + Delta-G solvation = -25.867184 kcal Electronic energy + Delta-G solvation = -25158.799885 eV Core-core repulsion = 21522.441109 eV Total energy + Delta-G solvation = -3636.358776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44925 -38.90815 -36.85993 -36.67102 -34.47125 -32.90218 -32.51083 -32.33807 -29.14912 -28.47052 -27.19164 -26.51273 -23.84040 -23.26707 -23.19456 -21.82534 -19.92819 -18.43294 -17.16571 -16.79587 -16.53733 -16.18007 -15.93732 -15.21821 -15.00279 -14.58558 -14.27675 -14.13820 -13.77150 -13.57946 -13.49647 -13.14977 -12.92133 -12.63802 -12.35617 -12.25602 -12.15094 -11.89003 -11.78850 -11.59833 -11.32106 -11.24079 -11.11159 -10.87437 -10.83388 -10.62660 -10.49884 -10.36036 -10.07291 -9.91031 -9.54785 -9.44814 -9.02196 -8.69490 -8.39560 -7.59889 -6.00307 -4.04251 0.85887 1.13695 1.90513 3.32786 3.40237 3.43326 3.48737 3.57843 3.99494 4.28112 4.47918 4.56473 4.63133 4.81946 4.87931 4.95118 4.98124 5.09903 5.27473 5.34397 5.37442 5.43027 5.51497 5.56116 5.62683 5.67927 5.74288 5.81078 5.82552 5.84177 5.92072 5.94379 6.09145 6.19825 6.25043 6.42641 6.43069 6.53371 7.10184 7.48609 7.59991 7.96045 7.97241 8.28482 8.46100 8.95856 9.15701 9.60878 11.07796 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008222 B = 0.004037 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.508072 B = 6933.341228 C = 9785.994328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.133 4.133 5 C 0.110 3.890 6 N -0.598 5.598 7 C 0.249 3.751 8 C -0.522 4.522 9 H 0.058 0.942 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.512 3.488 17 O -0.523 6.523 18 C -0.098 4.098 19 C 0.159 3.841 20 C -0.159 4.159 21 C -0.068 4.068 22 C -0.098 4.098 23 Cl -0.065 7.065 24 C 0.123 3.877 25 N -0.434 5.434 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.262 0.738 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 13.272 2.020 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.014 4.014 6 N -0.330 5.330 7 C 0.129 3.871 8 C -0.561 4.561 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.209 1.209 16 C 0.297 3.703 17 O -0.399 6.399 18 C -0.138 4.138 19 C 0.021 3.979 20 C -0.179 4.179 21 C -0.094 4.094 22 C -0.127 4.127 23 Cl -0.036 7.036 24 C -0.036 4.036 25 N -0.142 5.142 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.323 12.170 2.199 19.691 hybrid contribution -0.302 -0.277 0.290 0.502 sum -15.625 11.892 2.489 19.793 Atomic orbital electron populations 1.21915 0.95516 1.01899 1.01379 1.21078 0.95621 0.96042 0.98740 1.21828 1.01140 0.96085 1.01269 1.22122 1.02066 0.95776 0.97235 1.21540 0.98698 0.91324 0.89861 1.48197 1.19412 1.54025 1.11390 1.19239 0.76911 0.92320 0.98580 1.21486 0.93819 0.96760 1.44046 0.92384 1.24923 0.95186 0.98537 0.95457 1.69944 0.98401 1.36633 1.48560 0.86468 0.78090 0.84808 0.78219 1.19767 1.21050 1.20925 1.19837 0.85617 0.80969 0.83866 1.90709 1.73130 1.42695 1.33385 1.20788 0.96266 1.02818 0.93942 1.20867 0.93083 0.88439 0.95550 1.21945 1.00499 1.00455 0.94986 1.21423 0.96884 0.95492 0.95627 1.22114 1.04228 0.96194 0.90186 1.98365 1.81379 1.95849 1.28029 1.22836 0.92387 0.98953 0.89442 1.67696 1.10591 1.23491 1.12414 0.93040 0.92271 0.92848 0.90904 0.92652 0.93034 0.92925 0.92282 0.91206 0.90004 0.91591 0.95104 0.94045 0.92868 0.87346 0.87871 0.83958 0.83951 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.95 37.16 0.33 -0.95 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.34 9.19 37.16 0.34 -0.99 16 4 C -0.13 -1.68 5.01 -26.73 -0.13 -1.82 16 5 C 0.11 1.68 4.97 -4.04 -0.02 1.66 16 6 N -0.60 -12.32 2.46 -175.06 -0.43 -12.75 16 7 C 0.25 6.46 5.16 -5.20 -0.03 6.44 16 8 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 9 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 12 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 C 0.51 10.52 7.60 -10.99 -0.08 10.43 16 17 O -0.52 -13.37 14.91 5.55 0.08 -13.28 16 18 C -0.10 -1.40 4.65 -29.04 -0.14 -1.54 16 19 C 0.16 2.38 5.76 -82.59 -0.48 1.90 16 20 C -0.16 -1.82 9.71 -39.44 -0.38 -2.20 16 21 C -0.07 -0.73 9.98 -39.24 -0.39 -1.12 16 22 C -0.10 -1.20 6.34 -39.36 -0.25 -1.45 16 23 Cl -0.06 -0.69 28.99 -51.86 -1.50 -2.19 16 24 C 0.12 1.76 10.99 -17.51 -0.19 1.57 16 25 N -0.43 -7.47 9.22 -9.45 -0.09 -7.56 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.70 7.22 -51.93 -0.38 0.32 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 36 H 0.07 0.83 4.87 -51.93 -0.25 0.58 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.11 1.39 7.40 -51.93 -0.38 1.01 16 41 H 0.10 1.12 6.91 -51.93 -0.36 0.76 16 42 H 0.14 1.16 7.95 -52.49 -0.42 0.74 16 43 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -34.52 379.52 -9.31 -43.83 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.70 Total: -1.96 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.10 Total: -2.88 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.22 Total: -46.40 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.52 -9.31 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339928630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.962 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds