Wall clock time and date at job start Tue Mar 31 2020 13:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46954 * 2 1 4 4 C 1.52999 * 109.47250 * 119.99637 * 2 1 3 5 5 C 1.50698 * 109.47416 * 240.00184 * 2 1 3 6 6 N 1.29861 * 125.54575 * 60.02330 * 5 2 1 7 7 N 1.26256 * 117.78783 * 179.97438 * 6 5 2 8 8 C 1.30756 * 116.24620 * 359.97438 * 7 6 5 9 9 C 1.47314 * 126.18907 * 179.97438 * 8 7 6 10 10 O 1.21609 * 120.00399 * 187.26370 * 9 8 7 11 11 N 1.34781 * 119.99898 * 7.26513 * 9 8 7 12 12 C 1.46971 * 120.58885 * 6.72293 * 11 9 8 13 13 C 1.53814 * 108.39715 * 124.75981 * 12 11 9 14 14 N 1.46966 * 108.57927 * 49.63265 * 13 12 11 15 15 C 1.36933 * 120.59317 * 124.67039 * 14 13 12 16 16 H 1.07994 * 120.00463 * 223.11631 * 15 14 13 17 17 C 1.38819 * 119.99971 * 43.11170 * 15 14 13 18 18 N 1.31620 * 120.00032 * 9.33682 * 17 15 14 19 19 Si 1.86800 * 120.00040 * 189.33298 * 17 15 14 20 20 H 1.48493 * 109.47363 * 60.00360 * 19 17 15 21 21 H 1.48501 * 109.47221 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47164 * 300.00308 * 19 17 15 23 23 C 1.46957 * 118.81357 * 304.64689 * 14 13 12 24 24 C 1.46954 * 120.59736 * 187.00162 * 11 9 8 25 25 S 1.71277 * 125.54255 * 239.71488 * 5 2 1 26 26 H 1.09003 * 109.47431 * 60.00430 * 1 2 3 27 27 H 1.09007 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47485 * 299.99738 * 1 2 3 29 29 H 1.09005 * 109.46811 * 59.99849 * 3 2 1 30 30 H 1.08996 * 109.47031 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46814 * 300.00236 * 3 2 1 32 32 H 1.09007 * 109.46857 * 60.00407 * 4 2 1 33 33 H 1.08995 * 109.47202 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47386 * 300.00685 * 4 2 1 35 35 H 1.09008 * 109.60589 * 244.53835 * 12 11 9 36 36 H 1.08999 * 109.61124 * 5.05186 * 12 11 9 37 37 H 1.09002 * 109.73957 * 289.84544 * 13 12 11 38 38 H 1.09000 * 109.53140 * 169.30486 * 13 12 11 39 39 H 0.96997 * 120.00465 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.61315 * 295.48309 * 23 14 13 41 41 H 1.09002 * 109.60938 * 174.96979 * 23 14 13 42 42 H 1.09000 * 109.61336 * 354.94855 * 24 11 9 43 43 H 1.08997 * 109.61515 * 115.45995 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7103 -1.2304 6 7 1.7863 -0.3615 -2.4569 7 7 2.2841 -1.0646 -3.3799 8 6 3.0073 -2.0865 -3.0025 9 6 3.6863 -3.0466 -3.8898 10 8 4.2215 -4.0333 -3.4221 11 7 3.7144 -2.8314 -5.2200 12 6 3.2028 -1.5749 -5.7853 13 6 4.3149 -0.9364 -6.6347 14 7 4.8520 -1.9564 -7.5462 15 6 4.8805 -1.7378 -8.8977 16 1 4.5910 -2.5247 -9.5783 17 6 5.2815 -0.5045 -9.3930 18 7 5.8072 0.3904 -8.5836 19 14 5.0751 -0.1151 -11.2082 20 1 3.6377 -0.1974 -11.5719 21 1 5.5772 1.2557 -11.4807 22 1 5.8468 -1.0940 -12.0154 23 6 5.3584 -3.2151 -6.9814 24 6 4.2514 -3.8513 -6.1316 25 16 3.0269 -2.1048 -1.2388 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 -1.7489 1.2493 33 1 3.1299 -0.7208 1.2495 34 1 1.6766 -0.2074 2.1393 35 1 2.3344 -1.7821 -6.4108 36 1 2.9224 -0.8981 -4.9783 37 1 5.1103 -0.5710 -5.9851 38 1 3.9025 -0.1095 -7.2129 39 1 6.0877 1.2520 -8.9296 40 1 6.2282 -3.0119 -6.3565 41 1 5.6353 -3.8931 -7.7887 42 1 4.6638 -4.6782 -5.5533 43 1 3.4561 -4.2168 -6.7811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343456021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:07 Heat of formation + Delta-G solvation = 60.553360 kcal Electronic energy + Delta-G solvation = -25579.829535 eV Core-core repulsion = 21981.554692 eV Total energy + Delta-G solvation = -3598.274843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41814 -39.54911 -37.46291 -36.81189 -33.92021 -31.92129 -30.82249 -30.02723 -27.88959 -27.67187 -27.64352 -26.52479 -23.92919 -22.89172 -22.53297 -21.20219 -19.89464 -19.07888 -18.59742 -17.08255 -16.19530 -16.07131 -15.75883 -15.20267 -14.84098 -14.70845 -14.35527 -14.20348 -14.09390 -13.69153 -13.38101 -13.29081 -13.11015 -12.78679 -12.68606 -12.44066 -12.09284 -12.08177 -11.62023 -11.50025 -11.45623 -11.40576 -10.85218 -10.79093 -10.67603 -10.55516 -10.42233 -10.25528 -10.04677 -9.93118 -9.86664 -9.82595 -9.37938 -8.54458 -8.34860 -6.49420 -5.84388 -3.47113 -0.06883 0.60793 1.17263 2.11358 3.14281 3.18009 3.35219 3.40562 3.41577 3.67830 4.21925 4.29750 4.44139 4.44733 4.69932 4.87119 5.02686 5.15458 5.20990 5.33871 5.35323 5.43970 5.45466 5.49645 5.54317 5.68016 5.84131 5.88368 5.89867 5.92942 5.99413 6.12224 6.30608 6.43331 6.57713 6.79750 6.91636 7.18456 7.38346 7.68170 7.77743 8.14655 8.38993 8.48480 9.14990 9.71647 10.38965 11.21382 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.003234 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.197311 B = 8655.768084 C = 9619.852049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.137 4.137 4 C -0.157 4.157 5 C 0.000 4.000 6 N -0.267 5.267 7 N -0.205 5.205 8 C -0.041 4.041 9 C 0.587 3.413 10 O -0.544 6.544 11 N -0.561 5.561 12 C 0.051 3.949 13 C 0.166 3.834 14 N -0.588 5.588 15 C -0.270 4.270 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.133 3.867 24 C 0.094 3.906 25 S 0.217 5.783 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.024 0.976 38 H 0.083 0.917 39 H 0.257 0.743 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -1.379 20.071 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 C -0.196 4.196 4 C -0.215 4.215 5 C -0.277 4.277 6 N -0.105 5.105 7 N -0.048 5.048 8 C -0.320 4.320 9 C 0.369 3.631 10 O -0.422 6.422 11 N -0.291 5.291 12 C -0.073 4.073 13 C 0.040 3.960 14 N -0.311 5.311 15 C -0.400 4.400 16 H 0.078 0.922 17 C -0.182 4.182 18 N -0.535 5.535 19 Si 0.733 3.267 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.006 3.994 24 C -0.030 4.030 25 S 0.463 5.537 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.042 0.958 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.789 -1.560 20.005 21.906 hybrid contribution -0.056 0.422 -1.187 1.261 sum -8.845 -1.138 18.818 20.824 Atomic orbital electron populations 1.21879 0.91675 1.02659 1.03299 1.19252 0.96964 0.95370 0.87401 1.21889 1.01493 0.92916 1.03321 1.22109 1.01934 1.00785 0.96687 1.29528 1.00497 0.98590 0.99086 1.71281 1.19371 1.23942 0.95949 1.72075 1.06894 1.01444 1.24348 1.29908 1.04637 1.00961 0.96469 1.16610 0.80463 0.83824 0.82168 1.90806 1.47067 1.29276 1.75077 1.47926 1.57791 1.19326 1.04046 1.23663 0.98911 0.84606 1.00116 1.21140 0.91876 0.91852 0.91158 1.43839 1.69863 1.14310 1.03077 1.18989 1.40276 0.98879 0.81827 0.92237 1.25496 0.96501 0.98463 0.97701 1.69966 1.42120 1.06853 1.34596 0.86379 0.78131 0.77251 0.84949 1.20657 1.21541 1.20618 1.21333 0.92675 0.90035 0.95404 1.22446 0.98485 0.90321 0.91757 1.84714 1.43113 1.23246 1.02601 0.91081 0.92331 0.91129 0.91133 0.92192 0.91014 0.91633 0.91575 0.90240 0.91528 0.86386 0.95773 0.89864 0.93329 0.95766 0.91156 0.89688 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.46 37.16 0.31 -0.67 16 2 C 0.01 0.12 0.99 -155.66 -0.15 -0.04 16 3 C -0.14 -1.05 8.46 37.16 0.31 -0.74 16 4 C -0.16 -0.94 7.56 37.16 0.28 -0.66 16 5 C 0.00 0.00 5.89 -13.11 -0.08 -0.08 16 6 N -0.27 -3.97 11.59 32.65 0.38 -3.59 16 7 N -0.21 -3.45 8.14 32.94 0.27 -3.18 16 8 C -0.04 -0.68 7.30 -14.32 -0.10 -0.78 16 9 C 0.59 11.00 7.68 -12.57 -0.10 10.90 16 10 O -0.54 -10.85 16.40 5.27 0.09 -10.76 16 11 N -0.56 -10.88 2.94 -173.52 -0.51 -11.39 16 12 C 0.05 1.03 6.32 -3.36 -0.02 1.00 16 13 C 0.17 3.98 5.46 -3.36 -0.02 3.96 16 14 N -0.59 -14.75 2.87 -171.76 -0.49 -15.24 16 15 C -0.27 -7.31 9.42 -15.06 -0.14 -7.45 16 16 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 17 C 0.02 0.54 5.04 -17.43 -0.09 0.45 16 18 N -0.89 -25.81 11.88 55.49 0.66 -25.16 16 19 Si 0.90 21.33 29.56 -169.99 -5.03 16.31 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C 0.13 2.84 6.67 -3.60 -0.02 2.82 16 24 C 0.09 1.75 6.60 -3.60 -0.02 1.73 16 25 S 0.22 2.66 21.62 -107.50 -2.32 0.34 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.38 7.96 -51.93 -0.41 -0.04 16 33 H 0.07 0.40 7.95 -51.93 -0.41 -0.02 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.12 2.29 4.10 -81.09 -0.33 1.95 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 2.16 6.91 -51.93 -0.36 1.80 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.43 7.93 -51.93 -0.41 1.02 16 42 H 0.08 1.50 6.99 -51.93 -0.36 1.13 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -31.51 359.73 -7.87 -39.38 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.49 Total: -2.58 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 0.16 Total: 10.46 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.30 Total: -58.56 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.32 Total: 0.34 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.51 -7.87 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343456021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.937 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds