Wall clock time and date at job start Tue Mar 31 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 C 1.53001 * 109.46771 * 119.99643 * 2 1 3 5 5 H 1.08999 * 109.47538 * 296.02680 * 4 2 1 6 6 C 1.53011 * 109.46768 * 176.03271 * 4 2 1 7 7 N 1.46497 * 109.46853 * 176.73374 * 6 4 2 8 8 C 1.34773 * 119.99887 * 183.72204 * 7 6 4 9 9 O 1.21586 * 120.00311 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00049 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99711 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46863 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00082 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99824 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00421 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99755 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47168 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47160 * 119.99940 * 16 14 12 19 19 H 1.48505 * 109.46964 * 239.99624 * 16 14 12 20 20 C 1.50700 * 109.47505 * 56.03472 * 4 2 1 21 21 C 1.38237 * 119.98588 * 240.00150 * 20 4 2 22 22 C 1.38219 * 120.01457 * 179.97438 * 21 20 4 23 23 C 1.38355 * 119.98416 * 0.02562 * 22 21 20 24 24 Cl 1.73593 * 120.01152 * 180.02562 * 23 22 21 25 25 C 1.38353 * 119.97303 * 0.27067 * 23 22 21 26 26 C 1.38214 * 119.98715 * 359.40978 * 25 23 22 27 27 H 1.08996 * 109.47674 * 300.00271 * 1 2 3 28 28 H 1.08996 * 109.47269 * 60.00634 * 1 2 3 29 29 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47674 * 239.99729 * 2 1 3 31 31 H 1.09005 * 109.47117 * 186.15397 * 3 2 1 32 32 H 1.08995 * 109.47500 * 306.15176 * 3 2 1 33 33 H 1.09002 * 109.47549 * 66.15433 * 3 2 1 34 34 H 1.08997 * 109.46834 * 296.72659 * 6 4 2 35 35 H 1.09001 * 109.46935 * 56.73126 * 6 4 2 36 36 H 0.97002 * 120.00554 * 3.72346 * 7 6 4 37 37 H 0.96993 * 120.00217 * 0.02562 * 10 8 7 38 38 H 1.08993 * 109.47524 * 300.00574 * 11 10 8 39 39 H 1.08997 * 109.47060 * 60.01125 * 11 10 8 40 40 H 0.97000 * 120.00385 * 180.02562 * 15 14 12 41 41 H 1.08000 * 119.99698 * 359.97438 * 21 20 4 42 42 H 1.07995 * 120.00789 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00560 * 179.72652 * 25 23 22 44 44 H 1.08002 * 119.99795 * 180.31986 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7359 -0.1679 2.1379 6 6 3.5667 -0.8082 1.2004 7 7 4.0601 -1.4288 2.4323 8 6 5.3860 -1.5418 2.6457 9 8 6.1728 -1.1282 1.8160 10 7 5.8400 -2.1122 3.7793 11 6 7.2813 -2.2355 4.0109 12 6 7.5211 -2.9037 5.3403 13 1 6.6837 -3.2066 5.9512 14 6 8.8096 -3.1283 5.7765 15 7 9.8294 -2.7590 5.0327 16 14 9.1068 -3.9572 7.4239 17 1 7.8033 -4.2716 8.0621 18 1 9.8721 -5.2127 7.2155 19 1 9.8813 -3.0457 8.3041 20 6 1.4589 -2.1108 1.2996 21 6 0.6750 -2.4935 2.3719 22 6 0.1414 -3.7677 2.4183 23 6 0.3925 -4.6604 1.3915 24 17 -0.2778 -6.2606 1.4488 25 6 1.1823 -4.2787 0.3216 26 6 1.7098 -3.0021 0.2730 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1243 1.4445 -0.1102 32 1 1.5895 1.9871 -0.8297 33 1 1.7693 1.9236 0.9399 34 1 3.8690 -1.4107 0.3439 35 1 3.9849 0.1939 1.1056 36 1 3.4326 -1.7584 3.0945 37 1 5.2125 -2.4418 4.4414 38 1 7.7269 -2.8354 3.2175 39 1 7.7347 -1.2443 4.0152 40 1 10.7359 -2.9173 5.3394 41 1 0.4793 -1.7968 3.1736 42 1 -0.4714 -4.0665 3.2559 43 1 1.3823 -4.9765 -0.4781 44 1 2.3221 -2.7024 -0.5646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355634892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:59 Heat of formation + Delta-G solvation = -39.180627 kcal Electronic energy + Delta-G solvation = -24810.326245 eV Core-core repulsion = 21173.390154 eV Total energy + Delta-G solvation = -3636.936090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.33978 -38.97993 -37.41799 -36.34160 -34.28323 -33.77850 -32.26140 -31.38162 -31.30380 -28.69021 -27.20807 -26.73360 -23.92550 -23.21859 -22.36457 -21.75916 -20.23849 -19.72078 -17.99006 -17.50705 -16.26964 -16.05346 -15.81553 -15.31628 -14.90926 -14.73401 -14.64299 -14.38554 -14.02480 -13.79151 -13.61007 -13.43140 -13.05232 -12.87090 -12.85182 -12.41332 -12.15241 -11.95027 -11.79152 -11.76348 -11.69018 -11.46228 -11.09197 -11.04869 -10.91669 -10.89001 -10.83189 -10.71396 -10.27878 -9.37401 -9.32155 -9.28372 -8.76561 -8.74005 -8.63313 -7.71135 -6.12883 -4.19094 0.88916 1.04921 1.91818 3.25719 3.31424 3.34495 3.36039 3.43540 4.00457 4.28041 4.34406 4.41114 4.61845 4.65022 4.68332 4.86737 5.05271 5.06378 5.16469 5.19665 5.23328 5.27909 5.39790 5.43747 5.44790 5.61645 5.66390 5.69274 5.77595 5.85192 5.90464 5.97430 5.99104 6.06000 6.14197 6.33604 6.54378 6.90606 7.15947 7.56061 7.59120 7.60832 7.94450 8.07968 8.80263 8.98750 9.37566 9.52066 10.97449 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.003124 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.791195 B = 8959.546945 C =11058.866489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.153 4.153 4 C -0.058 4.058 5 H 0.088 0.912 6 C 0.148 3.852 7 N -0.756 5.756 8 C 0.693 3.307 9 O -0.602 6.602 10 N -0.730 5.730 11 C 0.267 3.733 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.063 4.063 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.039 4.039 24 Cl -0.076 7.076 25 C -0.106 4.106 26 C -0.097 4.097 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.390 0.610 37 H 0.385 0.615 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.265 0.735 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.666 1.956 -9.336 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.210 4.210 4 C -0.077 4.077 5 H 0.106 0.894 6 C 0.023 3.977 7 N -0.413 5.413 8 C 0.393 3.607 9 O -0.482 6.482 10 N -0.382 5.382 11 C 0.146 3.854 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.063 4.063 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.066 4.066 24 Cl -0.048 7.048 25 C -0.125 4.125 26 C -0.115 4.115 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.223 0.777 37 H 0.217 0.783 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.724 2.196 -10.100 25.878 hybrid contribution -0.359 -1.034 1.542 1.891 sum -24.083 1.162 -8.558 25.584 Atomic orbital electron populations 1.21847 0.94775 1.01975 1.01731 1.21068 0.96004 0.96254 0.96876 1.21931 1.01752 0.95307 1.01997 1.20607 0.94721 0.92244 1.00134 0.89413 1.21160 0.90726 0.98641 0.87172 1.45113 1.05926 1.67400 1.22868 1.16141 0.81705 0.79608 0.83289 1.90866 1.55049 1.55778 1.46463 1.45707 1.11019 1.62577 1.18890 1.18965 0.73110 0.97170 0.96163 1.21270 0.92627 1.40420 1.03544 0.91937 1.24942 0.95785 0.95562 0.97757 1.69988 0.98765 1.46195 1.37370 0.86373 0.78326 0.79101 0.83160 1.19669 1.20821 1.20827 1.19875 0.96529 0.95690 0.94207 1.21040 0.97566 0.95692 0.98245 1.21023 1.00582 0.93143 0.97815 1.20928 1.00788 0.87059 0.97783 1.98372 1.84390 1.23574 1.98415 1.21046 0.96971 0.96884 0.97560 1.20972 0.99120 0.92487 0.98942 0.92658 0.92654 0.92448 0.90621 0.91869 0.92472 0.92451 0.92095 0.91001 0.77737 0.78260 0.95814 0.95776 0.92551 0.85105 0.85050 0.85061 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.89 37.16 0.33 -0.63 16 2 C -0.08 -0.61 2.27 -90.62 -0.21 -0.81 16 3 C -0.15 -1.12 8.77 37.16 0.33 -0.80 16 4 C -0.06 -0.49 1.71 -91.77 -0.16 -0.65 16 5 H 0.09 0.69 7.88 -51.93 -0.41 0.28 16 6 C 0.15 1.81 4.77 -4.04 -0.02 1.79 16 7 N -0.76 -11.17 5.36 -65.22 -0.35 -11.52 16 8 C 0.69 14.43 8.57 -86.92 -0.74 13.69 16 9 O -0.60 -15.16 16.34 5.29 0.09 -15.08 16 10 N -0.73 -15.91 5.55 -66.42 -0.37 -16.28 16 11 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 12 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 13 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.06 -0.55 2.71 -104.62 -0.28 -0.83 16 21 C -0.11 -0.88 9.67 -39.59 -0.38 -1.27 16 22 C -0.11 -0.95 9.83 -39.55 -0.39 -1.33 16 23 C -0.04 -0.38 6.32 -39.50 -0.25 -0.63 16 24 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 25 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 26 C -0.10 -0.90 8.71 -39.59 -0.34 -1.25 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 7.10 -51.93 -0.37 0.05 16 30 H 0.08 0.56 7.53 -51.93 -0.39 0.17 16 31 H 0.06 0.53 6.78 -51.93 -0.35 0.18 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.80 7.28 -51.93 -0.38 0.42 16 35 H 0.07 0.95 6.52 -51.93 -0.34 0.61 16 36 H 0.39 4.81 8.12 -40.82 -0.33 4.48 16 37 H 0.39 7.25 8.33 -40.82 -0.34 6.91 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 0.84 7.95 -52.49 -0.42 0.42 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.13 1.11 7.12 -52.49 -0.37 0.74 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -33.09 378.03 -10.29 -43.37 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.62 Total: 6.08 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.95 Total: -0.44 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.02 Total: -53.45 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.09 Total: -15.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.09 -10.29 -43.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355634892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.194 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds