Wall clock time and date at job start Tue Mar 31 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47127 * 2 1 4 4 C 1.50701 * 109.47072 * 239.99739 * 2 1 3 5 5 H 1.08002 * 119.99664 * 239.99718 * 4 2 1 6 6 C 1.37871 * 120.00149 * 60.00350 * 4 2 1 7 7 N 1.31518 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00189 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47239 * 89.99842 * 8 6 4 10 10 H 1.48504 * 109.46836 * 209.99827 * 8 6 4 11 11 H 1.48498 * 109.46959 * 329.99748 * 8 6 4 12 12 C 1.53001 * 109.46897 * 119.99677 * 2 1 3 13 13 N 1.46902 * 109.47362 * 300.00188 * 12 2 1 14 14 C 1.46895 * 110.99966 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.47605 * 325.00033 * 14 13 12 16 16 C 1.53001 * 109.47188 * 204.99573 * 14 13 12 17 17 C 1.50706 * 109.46678 * 65.00445 * 16 14 13 18 18 C 1.38244 * 119.98773 * 89.99943 * 17 16 14 19 19 C 1.38217 * 120.01084 * 180.02562 * 18 17 16 20 20 C 1.38351 * 119.98541 * 0.25893 * 19 18 17 21 21 Cl 1.73604 * 120.00786 * 179.69323 * 20 19 18 22 22 C 1.38349 * 119.97465 * 359.42086 * 20 19 18 23 23 C 1.38212 * 119.98525 * 0.59771 * 22 20 19 24 24 C 1.50699 * 109.47208 * 85.00164 * 14 13 12 25 25 N 1.34777 * 120.00381 * 180.02562 * 24 14 13 26 26 O 1.21279 * 119.99735 * 359.97438 * 24 14 13 27 27 H 1.08998 * 109.47587 * 300.00262 * 1 2 3 28 28 H 1.09002 * 109.47278 * 60.00218 * 1 2 3 29 29 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47389 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.47279 * 300.00004 * 3 2 1 32 32 H 1.08999 * 109.47735 * 59.99846 * 3 2 1 33 33 H 0.97000 * 120.00037 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46994 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47093 * 59.99981 * 12 2 1 36 36 H 1.00894 * 110.99557 * 303.95465 * 13 12 2 37 37 H 1.08992 * 109.47474 * 305.00455 * 16 14 13 38 38 H 1.09001 * 109.47495 * 184.99868 * 16 14 13 39 39 H 1.07999 * 119.99331 * 0.02562 * 18 17 16 40 40 H 1.08002 * 120.00169 * 179.97438 * 19 18 17 41 41 H 1.08008 * 120.00633 * 180.29755 * 22 20 19 42 42 H 1.08000 * 119.99226 * 179.67843 * 23 22 20 43 43 H 0.96994 * 119.99723 * 359.97438 * 25 24 14 44 44 H 0.96998 * 119.99748 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0207 -0.6951 3.6703 15 1 2.0598 -1.7717 3.5049 16 6 1.0587 -0.3904 4.8204 17 6 -0.2866 -1.0023 4.5253 18 6 -0.5654 -2.2912 4.9400 19 6 -1.7988 -2.8531 4.6692 20 6 -2.7526 -2.1271 3.9783 21 17 -4.2992 -2.8351 3.6309 22 6 -2.4754 -0.8348 3.5694 23 6 -1.2415 -0.2742 3.8404 24 6 3.3970 -0.1903 4.0197 25 7 4.0323 -0.6648 5.1096 26 8 3.9333 0.6423 3.3197 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7082 1.1608 -3.4844 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 1.8197 0.9436 2.4401 37 1 0.9512 0.6889 4.9279 38 1 1.4537 -0.8102 5.7455 39 1 0.1808 -2.8593 5.4757 40 1 -2.0163 -3.8602 4.9929 41 1 -3.2214 -0.2659 3.0342 42 1 -1.0232 0.7327 3.5167 43 1 3.6035 -1.3310 5.6692 44 1 4.9180 -0.3396 5.3346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419351077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:59 Heat of formation + Delta-G solvation = -32.239665 kcal Electronic energy + Delta-G solvation = -25871.819087 eV Core-core repulsion = 22235.183979 eV Total energy + Delta-G solvation = -3636.635108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04524 -39.07622 -36.70548 -36.39138 -34.64530 -33.63184 -32.15737 -30.97717 -30.57943 -28.00372 -25.45657 -25.15966 -24.56580 -23.37201 -22.70451 -21.24615 -20.07760 -18.46545 -17.77143 -17.01896 -16.71790 -15.81276 -15.59220 -15.39007 -14.87811 -14.62744 -14.36698 -13.90721 -13.77472 -13.46838 -13.34210 -13.15314 -12.87607 -12.53459 -12.13187 -11.84186 -11.67444 -11.43433 -11.27381 -11.16587 -11.06927 -10.91701 -10.73766 -10.61056 -10.54578 -10.15718 -10.00860 -9.93594 -9.71276 -9.30845 -9.03287 -8.93277 -8.55984 -8.45964 -8.22831 -7.80219 -5.84942 -3.94580 1.20747 1.40462 2.18994 2.67215 3.35412 3.42089 3.45248 3.50875 3.74878 4.44503 4.56854 4.71120 4.84615 4.94118 5.05612 5.22399 5.25306 5.38650 5.40753 5.42855 5.63607 5.75038 5.87342 6.05345 6.25693 6.34488 6.35571 6.50966 6.65675 6.71496 6.81107 6.89674 6.99310 7.14541 7.23553 7.29331 7.42135 7.51380 7.71774 7.84292 7.88045 7.94611 8.26842 8.29812 8.41023 8.62696 9.06224 9.69790 11.15565 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.004525 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.665880 B = 6186.516794 C = 8513.889415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.072 3.928 3 C -0.128 4.128 4 C -0.504 4.504 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.075 3.925 13 N -0.654 5.654 14 C 0.071 3.929 15 H 0.101 0.899 16 C -0.064 4.064 17 C -0.060 4.060 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.037 4.037 21 Cl -0.083 7.083 22 C -0.108 4.108 23 C -0.066 4.066 24 C 0.486 3.514 25 N -0.860 5.860 26 O -0.531 6.531 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.080 0.920 32 H 0.009 0.991 33 H 0.257 0.743 34 H 0.019 0.981 35 H 0.053 0.947 36 H 0.350 0.650 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.398 0.602 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 -5.001 20.075 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.068 0.932 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.053 4.053 13 N -0.286 5.286 14 C -0.045 4.045 15 H 0.119 0.881 16 C -0.102 4.102 17 C -0.060 4.060 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.064 4.064 21 Cl -0.054 7.054 22 C -0.127 4.127 23 C -0.084 4.084 24 C 0.269 3.731 25 N -0.424 5.424 26 O -0.406 6.406 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.099 0.901 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.226 0.774 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.124 -4.708 19.277 20.268 hybrid contribution 1.433 -0.680 -0.635 1.708 sum -2.692 -5.388 18.642 19.591 Atomic orbital electron populations 1.21618 0.97381 0.98410 0.99928 1.18049 0.93036 0.92043 0.89724 1.21781 0.98000 0.98888 0.99897 1.21089 1.30908 1.11726 0.90532 0.93192 1.24860 0.95098 0.94959 0.98588 1.69837 1.36918 1.22792 1.22783 0.86687 0.79164 0.79460 0.83185 1.20851 1.21353 1.20172 1.22195 0.96164 0.97223 0.89695 1.60958 1.60417 1.07456 0.99805 1.21776 0.87989 1.00989 0.93700 0.88085 1.20557 0.91797 1.01779 0.96068 1.19632 0.95042 0.93937 0.97371 1.20905 0.96156 0.94938 1.00934 1.20894 0.93106 0.99906 0.99580 1.20896 0.87754 0.94803 1.02903 1.98356 1.28881 1.84101 1.94064 1.21078 0.98137 0.93527 0.99949 1.21006 0.91321 1.00779 0.95330 1.22199 0.89518 0.81415 0.79990 1.44045 1.22045 1.46765 1.29559 1.90793 1.67639 1.32346 1.49810 0.96227 0.90859 0.96458 0.96078 0.90092 0.97208 0.93279 0.96253 0.92883 0.82826 0.90179 0.90780 0.85678 0.85537 0.85173 0.84698 0.77362 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.09 37.16 0.30 -2.49 16 2 C 0.07 1.76 0.57 -155.66 -0.09 1.67 16 3 C -0.13 -3.15 7.92 37.15 0.29 -2.86 16 4 C -0.50 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.87 9.35 55.43 0.52 -24.36 16 8 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.08 1.58 4.28 -3.82 -0.02 1.57 16 13 N -0.65 -11.01 4.69 -107.96 -0.51 -11.52 16 14 C 0.07 0.90 2.38 -68.87 -0.16 0.74 16 15 H 0.10 1.25 7.80 -51.93 -0.40 0.85 16 16 C -0.06 -0.62 4.97 -27.88 -0.14 -0.76 16 17 C -0.06 -0.66 4.95 -104.62 -0.52 -1.18 16 18 C -0.11 -1.12 9.70 -39.59 -0.38 -1.50 16 19 C -0.12 -1.27 9.83 -39.55 -0.39 -1.66 16 20 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 21 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.49 16 22 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 23 C -0.07 -0.83 9.31 -39.59 -0.37 -1.19 16 24 C 0.49 6.51 7.26 -10.99 -0.08 6.43 16 25 N -0.86 -7.23 8.74 31.22 0.27 -6.96 16 26 O -0.53 -9.86 16.14 5.56 0.09 -9.77 16 27 H 0.02 0.42 7.60 -51.93 -0.39 0.02 16 28 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 2.19 6.07 -51.92 -0.32 1.88 16 32 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.02 0.44 7.62 -51.93 -0.40 0.04 16 35 H 0.05 1.12 8.05 -51.93 -0.42 0.70 16 36 H 0.35 6.42 5.79 -39.30 -0.23 6.19 16 37 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.07 0.48 7.37 -51.93 -0.38 0.10 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 42 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.40 2.00 8.19 -40.82 -0.33 1.66 16 44 H 0.40 3.04 8.93 -40.82 -0.36 2.67 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -31.51 370.03 -9.52 -41.03 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.39 Total: 8.00 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.56 Total: -16.09 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.28 Total: -42.83 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -9.52 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419351077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.790 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds