Wall clock time and date at job start Tue Mar 31 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47127 * 2 1 4 4 C 1.50701 * 109.47072 * 239.99739 * 2 1 3 5 5 H 1.08002 * 119.99664 * 239.99718 * 4 2 1 6 6 C 1.37871 * 120.00149 * 60.00350 * 4 2 1 7 7 N 1.31518 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00189 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47239 * 89.99842 * 8 6 4 10 10 H 1.48504 * 109.46836 * 209.99827 * 8 6 4 11 11 H 1.48498 * 109.46959 * 329.99748 * 8 6 4 12 12 C 1.53001 * 109.46897 * 119.99677 * 2 1 3 13 13 N 1.46902 * 109.47362 * 300.00188 * 12 2 1 14 14 C 1.46895 * 110.99966 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.47605 * 325.00033 * 14 13 12 16 16 C 1.53001 * 109.47188 * 204.99573 * 14 13 12 17 17 C 1.50706 * 109.46678 * 65.00445 * 16 14 13 18 18 C 1.38244 * 119.98773 * 89.99943 * 17 16 14 19 19 C 1.38217 * 120.01084 * 180.02562 * 18 17 16 20 20 C 1.38351 * 119.98541 * 0.25893 * 19 18 17 21 21 Cl 1.73604 * 120.00786 * 179.69323 * 20 19 18 22 22 C 1.38349 * 119.97465 * 359.42086 * 20 19 18 23 23 C 1.38212 * 119.98525 * 0.59771 * 22 20 19 24 24 C 1.50699 * 109.47208 * 85.00164 * 14 13 12 25 25 N 1.34777 * 120.00381 * 180.02562 * 24 14 13 26 26 O 1.21279 * 119.99735 * 359.97438 * 24 14 13 27 27 H 1.08998 * 109.47587 * 300.00262 * 1 2 3 28 28 H 1.09002 * 109.47278 * 60.00218 * 1 2 3 29 29 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47389 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.47279 * 300.00004 * 3 2 1 32 32 H 1.08999 * 109.47735 * 59.99846 * 3 2 1 33 33 H 0.97000 * 120.00037 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46994 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47093 * 59.99981 * 12 2 1 36 36 H 1.00894 * 110.99557 * 303.95465 * 13 12 2 37 37 H 1.08992 * 109.47474 * 305.00455 * 16 14 13 38 38 H 1.09001 * 109.47495 * 184.99868 * 16 14 13 39 39 H 1.07999 * 119.99331 * 0.02562 * 18 17 16 40 40 H 1.08002 * 120.00169 * 179.97438 * 19 18 17 41 41 H 1.08008 * 120.00633 * 180.29755 * 22 20 19 42 42 H 1.08000 * 119.99226 * 179.67843 * 23 22 20 43 43 H 0.96994 * 119.99723 * 359.97438 * 25 24 14 44 44 H 0.96998 * 119.99748 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0207 -0.6951 3.6703 15 1 2.0598 -1.7717 3.5049 16 6 1.0587 -0.3904 4.8204 17 6 -0.2866 -1.0023 4.5253 18 6 -0.5654 -2.2912 4.9400 19 6 -1.7988 -2.8531 4.6692 20 6 -2.7526 -2.1271 3.9783 21 17 -4.2992 -2.8351 3.6309 22 6 -2.4754 -0.8348 3.5694 23 6 -1.2415 -0.2742 3.8404 24 6 3.3970 -0.1903 4.0197 25 7 4.0323 -0.6648 5.1096 26 8 3.9333 0.6423 3.3197 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7082 1.1608 -3.4844 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 1.8197 0.9436 2.4401 37 1 0.9512 0.6889 4.9279 38 1 1.4537 -0.8102 5.7455 39 1 0.1808 -2.8593 5.4757 40 1 -2.0163 -3.8602 4.9929 41 1 -3.2214 -0.2659 3.0342 42 1 -1.0232 0.7327 3.5167 43 1 3.6035 -1.3310 5.6692 44 1 4.9180 -0.3396 5.3346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419351077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:59 Heat of formation + Delta-G solvation = -52.720351 kcal Electronic energy + Delta-G solvation = -25872.707196 eV Core-core repulsion = 22235.183979 eV Total energy + Delta-G solvation = -3637.523217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09564 -39.98776 -38.30495 -37.40614 -35.94180 -34.72944 -33.60047 -32.13711 -31.82175 -29.15653 -27.47745 -27.22156 -25.76951 -24.78136 -23.58975 -22.12580 -21.08593 -20.35938 -18.76035 -17.88997 -17.83554 -17.68111 -16.80490 -16.50493 -16.24569 -15.71611 -15.71134 -15.33970 -14.95591 -14.52401 -14.36317 -14.28181 -14.20334 -14.10892 -13.82540 -13.22245 -13.01491 -13.00408 -12.66669 -12.52363 -12.42546 -12.27680 -12.15753 -12.11208 -12.04410 -11.99643 -11.60748 -11.33988 -11.10085 -10.89858 -10.60544 -10.58144 -10.32848 -9.79457 -9.38995 -9.18559 -7.95325 -6.11681 0.32756 0.54839 1.29154 1.41000 1.42582 1.51083 1.64909 2.46512 2.61981 2.88121 3.26551 3.36246 3.87234 3.99360 4.12369 4.16599 4.24474 4.36993 4.53049 4.57495 4.60279 4.72029 4.84516 4.88438 4.91217 5.05411 5.09280 5.20787 5.22495 5.32734 5.41976 5.46004 5.48354 5.57122 5.70900 5.79154 5.80358 5.92699 6.05074 6.14145 6.24210 6.34007 6.46222 6.54156 6.61923 6.97420 7.39643 7.55230 9.02718 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.004525 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.665880 B = 6186.516794 C = 8513.889415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.063 3.937 3 C -0.112 4.112 4 C -0.525 4.525 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.096 3.904 13 N -0.650 5.650 14 C 0.071 3.929 15 H 0.112 0.888 16 C -0.054 4.054 17 C -0.064 4.064 18 C -0.103 4.103 19 C -0.121 4.121 20 C -0.052 4.052 21 Cl -0.087 7.087 22 C -0.127 4.127 23 C -0.082 4.082 24 C 0.486 3.514 25 N -0.831 5.831 26 O -0.590 6.590 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.008 0.992 30 H 0.004 0.996 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.257 0.743 34 H -0.003 1.003 35 H 0.051 0.949 36 H 0.341 0.659 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.419 0.581 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 -6.609 22.408 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 C -0.170 4.170 4 C -0.564 4.564 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.033 4.033 13 N -0.282 5.282 14 C -0.044 4.044 15 H 0.130 0.870 16 C -0.092 4.092 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.078 4.078 21 Cl -0.058 7.058 22 C -0.146 4.146 23 C -0.101 4.101 24 C 0.270 3.730 25 N -0.396 5.396 26 O -0.470 6.470 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.015 0.985 35 H 0.070 0.930 36 H 0.162 0.838 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.181 0.819 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.251 0.749 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.495 -6.361 21.678 22.861 hybrid contribution 1.239 -0.207 -1.268 1.785 sum -2.256 -6.568 20.410 21.559 Atomic orbital electron populations 1.21381 0.97093 0.97578 0.99378 1.18089 0.93131 0.91860 0.90643 1.21584 0.96676 0.99249 0.99516 1.21422 1.31022 1.11804 0.92132 0.94089 1.25513 0.95386 0.95665 1.01077 1.69969 1.37446 1.23578 1.23165 0.85812 0.78660 0.78525 0.80118 1.20330 1.21060 1.20006 1.21757 0.94492 0.96886 0.90183 1.60877 1.60408 1.06821 1.00056 1.21900 0.88654 1.00985 0.92823 0.87023 1.20567 0.90334 1.02037 0.96248 1.19801 0.95176 0.94423 0.97032 1.21308 0.96399 0.94467 0.99945 1.21219 0.93118 1.00657 0.98925 1.21085 0.88144 0.94944 1.03651 1.98349 1.29245 1.84042 1.94162 1.21146 0.98499 0.94117 1.00822 1.21081 0.91875 1.00851 0.96273 1.22172 0.89596 0.80792 0.80476 1.43756 1.22016 1.45927 1.27897 1.90784 1.68878 1.35222 1.52106 0.94299 0.93685 0.97266 0.97723 0.92694 0.95198 0.93391 0.98472 0.93028 0.83791 0.90411 0.86396 0.81949 0.83710 0.85670 0.85537 0.74874 0.76520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.71 8.09 71.98 0.58 -4.12 16 2 C 0.06 3.14 0.57 -52.93 -0.03 3.11 16 3 C -0.11 -5.67 7.92 71.98 0.57 -5.10 16 4 C -0.53 -29.32 8.01 25.60 0.21 -29.11 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 6 C 0.02 1.26 5.15 84.65 0.44 1.69 16 7 N -0.90 -51.73 9.35 21.45 0.20 -51.53 16 8 Si 0.94 44.67 29.54 68.60 2.03 46.70 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 C 0.10 4.02 4.28 86.30 0.37 4.39 16 13 N -0.65 -21.32 4.69 -495.46 -2.32 -23.65 16 14 C 0.07 1.63 2.38 44.17 0.11 1.73 16 15 H 0.11 2.38 7.80 -2.39 -0.02 2.36 16 16 C -0.05 -0.85 4.97 29.85 0.15 -0.70 16 17 C -0.06 -1.23 4.95 -19.86 -0.10 -1.33 16 18 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 19 C -0.12 -2.31 9.83 22.29 0.22 -2.09 16 20 C -0.05 -1.22 6.32 22.32 0.14 -1.08 16 21 Cl -0.09 -2.01 28.96 -2.72 -0.08 -2.09 16 22 C -0.13 -3.19 9.83 22.29 0.22 -2.97 16 23 C -0.08 -1.98 9.31 22.26 0.21 -1.77 16 24 C 0.49 11.96 7.26 87.66 0.64 12.59 16 25 N -0.83 -10.99 8.74 -173.53 -1.52 -12.51 16 26 O -0.59 -21.61 16.14 -3.03 -0.05 -21.66 16 27 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 28 H 0.04 2.44 6.07 -2.39 -0.01 2.43 16 29 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.05 3.05 6.07 -2.38 -0.01 3.03 16 32 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.00 -0.14 7.62 -2.39 -0.02 -0.16 16 35 H 0.05 2.15 8.05 -2.38 -0.02 2.13 16 36 H 0.34 12.40 5.79 -89.70 -0.52 11.88 16 37 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 38 H 0.12 0.85 7.37 -2.39 -0.02 0.84 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.42 2.10 8.19 -92.71 -0.76 1.34 16 44 H 0.40 4.90 8.93 -92.71 -0.83 4.07 16 Total: -1.00 -70.79 370.03 1.12 -69.67 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -1.07 Total: 21.27 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 3.93 Total: -26.21 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -3.64 Total: -87.68 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.09 kcal Total: -70.79 1.12 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419351077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.950 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds