Wall clock time and date at job start Tue Mar 31 2020 14:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47406 * 2 1 4 4 H 1.09000 * 109.47072 * 305.00157 * 3 2 1 5 5 N 1.46505 * 109.46828 * 64.99885 * 3 2 1 6 6 C 1.34774 * 119.99851 * 275.00004 * 5 3 2 7 7 O 1.21284 * 120.00251 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99845 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47120 * 40.00254 * 8 6 5 10 10 N 1.46906 * 109.46922 * 160.00022 * 8 6 5 11 11 C 1.52993 * 109.47029 * 280.00155 * 8 6 5 12 12 C 1.53009 * 109.47000 * 175.00321 * 11 8 6 13 13 C 1.50702 * 109.47075 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99647 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99647 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47051 * 89.99981 * 17 15 13 19 19 H 1.48499 * 109.46860 * 209.99264 * 17 15 13 20 20 H 1.48491 * 109.47422 * 329.99851 * 17 15 13 21 21 C 1.50703 * 109.47336 * 184.99938 * 3 2 1 22 22 C 1.38246 * 119.98383 * 279.73062 * 21 3 2 23 23 C 1.38217 * 120.01045 * 179.72957 * 22 21 3 24 24 C 1.38348 * 119.98473 * 0.53689 * 23 22 21 25 25 Cl 1.73599 * 120.01360 * 179.70545 * 24 23 22 26 26 C 1.38349 * 119.97632 * 359.73585 * 24 23 22 27 27 C 1.38216 * 119.98696 * 359.97438 * 26 24 23 28 28 H 1.09008 * 109.46865 * 59.99968 * 1 2 3 29 29 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47271 * 300.00348 * 1 2 3 31 31 H 1.09006 * 109.47178 * 239.99996 * 2 1 3 32 32 H 1.08998 * 109.47193 * 120.00463 * 2 1 3 33 33 H 0.96997 * 119.99995 * 94.99997 * 5 3 2 34 34 H 1.00902 * 111.00068 * 296.04469 * 10 8 6 35 35 H 1.00897 * 110.99706 * 59.99883 * 10 8 6 36 36 H 1.09003 * 109.47360 * 294.99247 * 11 8 6 37 37 H 1.09000 * 109.47744 * 55.00041 * 11 8 6 38 38 H 1.09007 * 109.46734 * 300.00132 * 12 11 8 39 39 H 1.09000 * 109.47100 * 59.99327 * 12 11 8 40 40 H 0.97005 * 119.99669 * 180.02562 * 16 15 13 41 41 H 1.08000 * 119.99290 * 359.97438 * 22 21 3 42 42 H 1.08000 * 120.00409 * 180.27213 * 23 22 21 43 43 H 1.07998 * 120.01009 * 179.97438 * 26 24 23 44 44 H 1.07995 * 119.99652 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4352 2.6644 1.3669 7 8 -0.3396 2.6319 0.4344 8 6 0.0362 3.3376 2.6549 9 1 0.8858 3.8921 3.0533 10 7 -1.0761 4.2627 2.3997 11 6 -0.4029 2.2793 3.6687 12 6 -0.6887 2.9496 5.0142 13 6 -1.1206 1.9071 6.0131 14 1 -1.1852 0.8703 5.7177 15 6 -1.4342 2.2772 7.3037 16 7 -1.3560 3.5398 7.6631 17 14 -1.9703 0.9851 8.5416 18 1 -0.7780 0.4522 9.2486 19 1 -2.8969 1.5980 9.5269 20 1 -2.6618 -0.1220 7.8337 21 6 3.5420 1.4443 -0.1238 22 6 4.3272 1.2085 0.9893 23 6 5.7047 1.2045 0.8752 24 6 6.2977 1.4474 -0.3509 25 17 8.0278 1.4501 -0.4934 26 6 5.5114 1.6889 -1.4633 27 6 4.1339 1.6867 -1.3493 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2719 2.1231 1.9978 34 1 -0.7917 5.0086 1.7826 35 1 -1.8764 3.7723 2.0295 36 1 -1.3058 1.7850 3.3102 37 1 0.3906 1.5421 3.7914 38 1 0.2142 3.4440 5.3728 39 1 -1.4822 3.6868 4.8916 40 1 -1.5763 3.8001 8.5712 41 1 3.8642 1.0235 1.9473 42 1 6.3180 1.0159 1.7440 43 1 5.9737 1.8790 -2.4206 44 1 3.5200 1.8748 -2.2176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424072086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:23 Heat of formation + Delta-G solvation = -41.222540 kcal Electronic energy + Delta-G solvation = -24849.040489 eV Core-core repulsion = 21212.015855 eV Total energy + Delta-G solvation = -3637.024634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57878 -39.40147 -37.05504 -36.00405 -35.05626 -32.83900 -32.35067 -31.46054 -31.11144 -30.10363 -27.01020 -25.76160 -23.72722 -23.29055 -22.47536 -21.05684 -20.41195 -19.84177 -17.88235 -17.06131 -16.64442 -16.12065 -15.76416 -15.48221 -15.36938 -15.07087 -14.46851 -14.22348 -14.15354 -13.91572 -13.86872 -13.54685 -13.14118 -12.78646 -12.63802 -12.33793 -12.03802 -11.93927 -11.80088 -11.54623 -11.50198 -11.24598 -11.18150 -10.92613 -10.90558 -10.66595 -10.55694 -10.11175 -9.81931 -9.46081 -9.38309 -9.16645 -9.01149 -8.92589 -8.36042 -8.21450 -5.95133 -3.97369 0.68259 0.87296 1.75261 2.74798 3.07945 3.32777 3.33383 3.40221 3.43414 4.20697 4.35664 4.47182 4.48766 4.82192 4.86310 4.87485 4.97020 5.03174 5.08261 5.24030 5.35147 5.40482 5.47174 5.51469 5.56437 5.72461 5.78955 5.81433 5.81940 5.93801 6.03112 6.10969 6.35312 6.38187 6.43093 6.48102 6.62999 7.06779 7.35009 7.56144 7.74542 7.78468 7.94655 8.11672 8.28941 8.46840 9.10707 9.65930 11.15738 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.002651 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.821865 B =10559.153759 C =11562.496553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.183 3.817 4 H 0.096 0.904 5 N -0.726 5.726 6 C 0.486 3.514 7 O -0.546 6.546 8 C 0.078 3.922 9 H 0.096 0.904 10 N -0.807 5.807 11 C -0.094 4.094 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.083 4.083 22 C -0.100 4.100 23 C -0.104 4.104 24 C -0.036 4.036 25 Cl -0.072 7.072 26 C -0.108 4.108 27 C -0.096 4.096 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.334 0.666 35 H 0.348 0.652 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.343 -4.344 -19.532 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.078 3.922 4 H 0.114 0.886 5 N -0.379 5.379 6 C 0.272 3.728 7 O -0.424 6.424 8 C -0.038 4.038 9 H 0.114 0.886 10 N -0.334 5.334 11 C -0.133 4.133 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.084 4.084 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.063 4.063 25 Cl -0.043 7.043 26 C -0.126 4.126 27 C -0.115 4.115 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.889 -4.086 -19.266 24.689 hybrid contribution 0.443 -1.030 0.076 1.124 sum 15.332 -5.116 -19.190 25.090 Atomic orbital electron populations 1.21813 0.94254 1.00838 1.03388 1.21940 0.97389 0.94869 1.02376 1.19873 0.88938 0.94374 0.88998 0.88600 1.46319 1.17565 1.58232 1.15796 1.22700 0.80760 0.77657 0.91695 1.90656 1.51003 1.59507 1.41186 1.21849 0.95658 0.95202 0.91111 0.88562 1.58992 1.07063 1.13222 1.54151 1.21648 0.99886 0.95146 0.96572 1.19016 0.97587 0.95846 0.88135 1.21272 1.45269 0.94040 0.95487 0.93010 1.24989 0.95776 0.95128 0.98428 1.69974 1.49130 1.15507 1.18545 0.86659 0.78509 0.81856 0.81336 1.20780 1.21260 1.19981 1.20109 0.95369 0.99062 0.93870 1.20991 0.92761 0.99170 0.98918 1.21081 0.95012 0.99797 0.96392 1.20976 0.84677 1.04988 0.95645 1.98379 1.10679 1.97009 1.98281 1.21040 0.93368 1.00309 0.97909 1.20977 0.93933 0.99172 0.97425 0.92340 0.93432 0.91805 0.91314 0.91500 0.76313 0.85460 0.83819 0.92847 0.92912 0.96928 0.94677 0.93091 0.84745 0.84585 0.84790 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.51 37.16 0.32 -1.48 16 2 C -0.13 -1.29 5.59 -26.73 -0.15 -1.44 16 3 C 0.18 1.85 2.46 -69.08 -0.17 1.68 16 4 H 0.10 1.07 7.44 -51.93 -0.39 0.69 16 5 N -0.73 -8.21 4.98 -54.93 -0.27 -8.49 16 6 C 0.49 6.92 5.64 -10.99 -0.06 6.86 16 7 O -0.55 -8.89 13.39 5.55 0.07 -8.82 16 8 C 0.08 1.23 3.15 -68.86 -0.22 1.02 16 9 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 10 N -0.81 -13.06 8.44 -5.65 -0.05 -13.11 16 11 C -0.09 -1.82 4.78 -26.73 -0.13 -1.95 16 12 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 13 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 14 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.08 -0.73 4.96 -104.62 -0.52 -1.25 16 22 C -0.10 -0.83 9.06 -39.59 -0.36 -1.19 16 23 C -0.10 -0.86 9.83 -39.55 -0.39 -1.25 16 24 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 25 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.10 16 26 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 27 C -0.10 -0.76 9.67 -39.59 -0.38 -1.14 16 28 H 0.06 0.75 7.85 -51.92 -0.41 0.35 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.95 5.64 -51.93 -0.29 0.65 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.40 3.98 6.85 -40.82 -0.28 3.70 16 34 H 0.33 4.69 9.06 -39.29 -0.36 4.34 16 35 H 0.35 5.70 8.58 -39.29 -0.34 5.37 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 0.99 6.90 -52.49 -0.36 0.63 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.83 8.04 -52.49 -0.42 0.41 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -31.33 376.40 -10.20 -41.53 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.59 Total: 9.31 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -3.24 Total: -14.56 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.42 Total: -47.55 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.33 -10.20 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424072086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.305 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds