Wall clock time and date at job start Tue Mar 31 2020 14:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99931 * 2 1 4 4 N 1.46905 * 109.46846 * 124.05299 * 3 2 1 5 5 C 1.46894 * 110.99878 * 199.46044 * 4 3 2 6 6 C 1.50706 * 109.46891 * 66.04998 * 5 4 3 7 7 H 1.07995 * 120.00146 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99613 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00292 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99469 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47023 * 89.99909 * 10 8 6 12 12 H 1.48499 * 109.46811 * 210.00214 * 10 8 6 13 13 H 1.48499 * 109.47295 * 329.99679 * 10 8 6 14 14 C 1.46896 * 110.99720 * 75.51168 * 4 3 2 15 15 C 1.52998 * 109.47060 * 191.10151 * 14 4 3 16 16 C 1.50702 * 109.47229 * 184.32922 * 15 14 4 17 17 O 1.21286 * 120.00124 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00273 * 180.02562 * 16 15 14 19 19 C 1.39912 * 120.00538 * 185.11865 * 18 16 15 20 20 C 1.38847 * 120.04795 * 144.71161 * 19 18 16 21 21 C 1.38346 * 119.95500 * 179.97438 * 20 19 18 22 22 F 1.35105 * 119.97706 * 179.97438 * 21 20 19 23 23 C 1.38474 * 120.04913 * 359.97438 * 21 20 19 24 24 C 1.38474 * 120.08511 * 0.02562 * 23 21 20 25 25 F 1.35099 * 119.97559 * 179.97438 * 24 23 21 26 26 C 1.38354 * 120.04726 * 0.02562 * 24 23 21 27 27 H 1.08004 * 119.99837 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00392 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00392 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46795 * 4.05603 * 3 2 1 31 31 H 1.08999 * 109.47184 * 244.05533 * 3 2 1 32 32 H 1.08996 * 109.47084 * 186.04864 * 5 4 3 33 33 H 1.09005 * 109.47571 * 306.04963 * 5 4 3 34 34 H 0.97002 * 119.99842 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47417 * 71.09883 * 14 4 3 36 36 H 1.09008 * 109.47186 * 311.10299 * 14 4 3 37 37 H 1.09008 * 109.47247 * 64.33270 * 15 14 4 38 38 H 1.08999 * 109.47551 * 304.32799 * 15 14 4 39 39 H 0.97004 * 119.99876 * 5.11468 * 18 16 15 40 40 H 1.07997 * 120.02200 * 359.70568 * 20 19 18 41 41 H 1.07998 * 119.96055 * 180.02562 * 23 21 20 42 42 H 1.07993 * 120.02236 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9799 1.3414 1.1475 5 6 3.3811 2.7201 1.4575 6 6 2.1807 3.4977 1.9327 7 1 1.2163 3.0160 1.9975 8 6 2.3139 4.8242 2.2847 9 7 3.4882 5.4109 2.2053 10 14 0.8261 5.7878 2.8743 11 1 0.7099 5.6651 4.3497 12 1 0.9855 7.2179 2.5075 13 1 -0.3997 5.2463 2.2345 14 6 4.1548 0.4922 0.9099 15 6 4.9408 0.3329 2.2128 16 6 6.2013 -0.4490 1.9467 17 8 6.4466 -0.8408 0.8254 18 7 7.0556 -0.7138 2.9549 19 6 8.2758 -1.3454 2.6904 20 6 9.4066 -1.0070 3.4215 21 6 10.6120 -1.6331 3.1588 22 9 11.7128 -1.3038 3.8695 23 6 10.6911 -2.5970 2.1678 24 6 9.5645 -2.9359 1.4375 25 9 9.6443 -3.8763 0.4708 26 6 8.3574 -2.3114 1.6964 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3573 2.1323 0.0727 31 1 2.6345 1.3950 -0.9241 32 1 4.1405 2.7105 2.2393 33 1 3.7874 3.1904 0.5620 34 1 3.5818 6.3440 2.4534 35 1 4.7913 0.9551 0.1558 36 1 3.8300 -0.4876 0.5594 37 1 4.3305 -0.1991 2.9427 38 1 5.1995 1.3170 2.6038 39 1 6.8246 -0.4665 3.8640 40 1 9.3463 -0.2525 4.1919 41 1 11.6327 -3.0851 1.9641 42 1 7.4790 -2.5758 1.1264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:22 Heat of formation + Delta-G solvation = -73.086373 kcal Electronic energy + Delta-G solvation = -26225.878916 eV Core-core repulsion = 22035.675882 eV Total energy + Delta-G solvation = -4190.203034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.30507 -49.22918 -40.75421 -38.57282 -37.15206 -34.91447 -33.36727 -32.70304 -31.00704 -30.63964 -29.55096 -27.21458 -25.17093 -23.81564 -23.27114 -22.63666 -20.90047 -20.08661 -19.10642 -18.77450 -17.73441 -16.96356 -16.76229 -16.48704 -16.26070 -16.16136 -15.85064 -15.55959 -15.34640 -15.14828 -14.70481 -14.52586 -14.30918 -13.86216 -13.57474 -13.22164 -12.93556 -12.69131 -12.41868 -12.23396 -12.21604 -12.17263 -11.81588 -11.57189 -11.02351 -10.88667 -10.76460 -10.64977 -10.59280 -10.22599 -9.95608 -9.83004 -9.28197 -9.05849 -8.92605 -8.66033 -8.49473 -7.33646 -6.09824 -4.11100 0.61080 0.68605 2.40228 2.61477 2.75209 3.12443 3.27470 3.34192 3.37493 3.64163 4.06087 4.36146 4.46876 4.54717 4.59237 4.73018 4.96046 5.06582 5.25327 5.31114 5.39608 5.50220 5.53095 5.61072 5.67693 5.70718 5.83860 5.92379 6.01411 6.05241 6.23237 6.27319 6.38171 6.53747 6.54045 7.03621 7.06938 7.14309 7.27209 7.28654 7.73419 7.91400 7.98538 8.10970 8.45932 8.97012 9.53560 11.00822 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.002615 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.001143 B =10703.553870 C =12325.998684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C 0.084 3.916 4 N -0.534 5.534 5 C 0.189 3.811 6 C -0.509 4.509 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.071 3.929 15 C -0.135 4.135 16 C 0.521 3.479 17 O -0.517 6.517 18 N -0.677 5.677 19 C 0.214 3.786 20 C -0.195 4.195 21 C 0.150 3.850 22 F -0.129 7.129 23 C -0.213 4.213 24 C 0.150 3.850 25 F -0.128 7.128 26 C -0.171 4.171 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.033 0.967 33 H -0.008 1.008 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.419 0.581 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -15.440 2.476 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.149 4.149 3 C -0.043 4.043 4 N -0.258 5.258 5 C 0.064 3.936 6 C -0.547 4.547 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.058 4.058 15 C -0.175 4.175 16 C 0.310 3.690 17 O -0.391 6.391 18 N -0.323 5.323 19 C 0.117 3.883 20 C -0.216 4.216 21 C 0.130 3.870 22 F -0.108 7.108 23 C -0.233 4.233 24 C 0.130 3.870 25 F -0.107 7.107 26 C -0.192 4.192 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.010 0.990 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.256 0.744 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.136 -15.672 2.071 18.779 hybrid contribution -0.042 0.995 0.163 1.009 sum 10.094 -14.678 2.234 17.953 Atomic orbital electron populations 1.23701 0.95965 1.01194 1.03066 1.22981 0.95852 0.98473 0.97626 1.21167 0.96064 0.95594 0.91509 1.62100 1.13508 1.13566 1.36659 1.19818 0.96753 0.81595 0.95446 1.21160 0.95314 0.94686 1.43556 0.91753 1.24983 0.96006 0.97698 0.95831 1.69948 1.22846 1.12263 1.48673 0.86519 0.82937 0.79018 0.79076 1.20625 1.21344 1.19833 1.21731 0.92015 0.98338 0.93746 1.21740 0.92146 1.01594 1.02019 1.21374 0.84962 0.78767 0.83906 1.90696 1.75050 1.50772 1.22561 1.43728 1.16539 1.59563 1.12427 1.17070 0.85627 0.90866 0.94717 1.20897 0.90441 1.04418 1.05865 1.16830 0.82783 0.95652 0.91754 1.91545 1.51364 1.91355 1.76500 1.20961 1.00046 1.02681 0.99661 1.17016 0.93480 0.88739 0.87801 1.91542 1.96878 1.61954 1.60281 1.21339 0.98816 0.97309 1.01734 0.89313 0.88599 0.88392 0.88892 0.95150 0.94877 0.99049 0.92881 0.94814 0.91404 0.87687 0.87142 0.74356 0.83457 0.83438 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 14.32 29.02 0.42 -2.54 16 2 C -0.13 -2.09 9.35 -36.02 -0.34 -2.42 16 3 C 0.08 1.59 5.26 -4.97 -0.03 1.56 16 4 N -0.53 -10.69 4.41 -237.51 -1.05 -11.74 16 5 C 0.19 4.57 4.59 -4.98 -0.02 4.54 16 6 C -0.51 -13.50 8.24 -34.43 -0.28 -13.78 16 7 H 0.06 1.71 7.31 -52.49 -0.38 1.32 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -25.54 13.29 55.43 0.74 -24.81 16 10 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.07 1.21 4.12 -3.83 -0.02 1.19 16 15 C -0.14 -1.89 5.76 -27.88 -0.16 -2.05 16 16 C 0.52 6.89 7.68 -10.99 -0.08 6.81 16 17 O -0.52 -8.40 13.36 5.55 0.07 -8.33 16 18 N -0.68 -6.82 5.33 -9.88 -0.05 -6.87 16 19 C 0.21 2.28 6.30 -83.72 -0.53 1.75 16 20 C -0.19 -1.80 9.94 -39.32 -0.39 -2.20 16 21 C 0.15 1.44 7.29 -39.45 -0.29 1.16 16 22 F -0.13 -1.27 17.27 2.25 0.04 -1.24 16 23 C -0.21 -2.03 10.00 -39.41 -0.39 -2.42 16 24 C 0.15 1.64 7.30 -39.45 -0.29 1.35 16 25 F -0.13 -1.47 17.27 2.25 0.04 -1.43 16 26 C -0.17 -2.01 8.68 -39.31 -0.34 -2.35 16 27 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.10 1.44 7.84 -52.49 -0.41 1.03 16 29 H 0.10 1.44 7.26 -52.49 -0.38 1.06 16 30 H 0.09 1.93 6.22 -51.93 -0.32 1.61 16 31 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 32 H 0.03 0.82 6.07 -51.93 -0.32 0.51 16 33 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.07 1.09 6.91 -51.92 -0.36 0.73 16 37 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.11 1.66 6.24 -51.93 -0.32 1.34 16 39 H 0.42 2.89 8.82 -40.82 -0.36 2.53 16 40 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.16 2.09 6.22 -52.49 -0.33 1.76 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -30.15 363.64 -7.85 -38.00 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.26 Total: 3.05 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.84 Total: -7.96 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.36 Total: -43.42 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.15 -7.85 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.085 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds