Wall clock time and date at job start Tue Mar 31 2020 14:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99931 * 2 1 4 4 N 1.46905 * 109.46846 * 124.05299 * 3 2 1 5 5 C 1.46894 * 110.99878 * 199.46044 * 4 3 2 6 6 C 1.50706 * 109.46891 * 66.04998 * 5 4 3 7 7 H 1.07995 * 120.00146 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99613 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00292 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99469 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47023 * 89.99909 * 10 8 6 12 12 H 1.48499 * 109.46811 * 210.00214 * 10 8 6 13 13 H 1.48499 * 109.47295 * 329.99679 * 10 8 6 14 14 C 1.46896 * 110.99720 * 75.51168 * 4 3 2 15 15 C 1.52998 * 109.47060 * 191.10151 * 14 4 3 16 16 C 1.50702 * 109.47229 * 184.32922 * 15 14 4 17 17 O 1.21286 * 120.00124 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00273 * 180.02562 * 16 15 14 19 19 C 1.39912 * 120.00538 * 185.11865 * 18 16 15 20 20 C 1.38847 * 120.04795 * 144.71161 * 19 18 16 21 21 C 1.38346 * 119.95500 * 179.97438 * 20 19 18 22 22 F 1.35105 * 119.97706 * 179.97438 * 21 20 19 23 23 C 1.38474 * 120.04913 * 359.97438 * 21 20 19 24 24 C 1.38474 * 120.08511 * 0.02562 * 23 21 20 25 25 F 1.35099 * 119.97559 * 179.97438 * 24 23 21 26 26 C 1.38354 * 120.04726 * 0.02562 * 24 23 21 27 27 H 1.08004 * 119.99837 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00392 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00392 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46795 * 4.05603 * 3 2 1 31 31 H 1.08999 * 109.47184 * 244.05533 * 3 2 1 32 32 H 1.08996 * 109.47084 * 186.04864 * 5 4 3 33 33 H 1.09005 * 109.47571 * 306.04963 * 5 4 3 34 34 H 0.97002 * 119.99842 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47417 * 71.09883 * 14 4 3 36 36 H 1.09008 * 109.47186 * 311.10299 * 14 4 3 37 37 H 1.09008 * 109.47247 * 64.33270 * 15 14 4 38 38 H 1.08999 * 109.47551 * 304.32799 * 15 14 4 39 39 H 0.97004 * 119.99876 * 5.11468 * 18 16 15 40 40 H 1.07997 * 120.02200 * 359.70568 * 20 19 18 41 41 H 1.07998 * 119.96055 * 180.02562 * 23 21 20 42 42 H 1.07993 * 120.02236 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9799 1.3414 1.1475 5 6 3.3811 2.7201 1.4575 6 6 2.1807 3.4977 1.9327 7 1 1.2163 3.0160 1.9975 8 6 2.3139 4.8242 2.2847 9 7 3.4882 5.4109 2.2053 10 14 0.8261 5.7878 2.8743 11 1 0.7099 5.6651 4.3497 12 1 0.9855 7.2179 2.5075 13 1 -0.3997 5.2463 2.2345 14 6 4.1548 0.4922 0.9099 15 6 4.9408 0.3329 2.2128 16 6 6.2013 -0.4490 1.9467 17 8 6.4466 -0.8408 0.8254 18 7 7.0556 -0.7138 2.9549 19 6 8.2758 -1.3454 2.6904 20 6 9.4066 -1.0070 3.4215 21 6 10.6120 -1.6331 3.1588 22 9 11.7128 -1.3038 3.8695 23 6 10.6911 -2.5970 2.1678 24 6 9.5645 -2.9359 1.4375 25 9 9.6443 -3.8763 0.4708 26 6 8.3574 -2.3114 1.6964 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3573 2.1323 0.0727 31 1 2.6345 1.3950 -0.9241 32 1 4.1405 2.7105 2.2393 33 1 3.7874 3.1904 0.5620 34 1 3.5818 6.3440 2.4534 35 1 4.7913 0.9551 0.1558 36 1 3.8300 -0.4876 0.5594 37 1 4.3305 -0.1991 2.9427 38 1 5.1995 1.3170 2.6038 39 1 6.8246 -0.4665 3.8640 40 1 9.3463 -0.2525 4.1919 41 1 11.6327 -3.0851 1.9641 42 1 7.4790 -2.5758 1.1264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428853325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:22 Heat of formation + Delta-G solvation = -91.033823 kcal Electronic energy + Delta-G solvation = -26226.657176 eV Core-core repulsion = 22035.675882 eV Total energy + Delta-G solvation = -4190.981294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.10076 -50.07040 -41.73929 -39.57662 -38.64157 -35.86667 -34.95571 -34.40719 -32.28008 -31.45307 -30.60500 -29.03469 -26.52769 -25.32038 -24.18227 -23.78902 -22.19041 -21.36422 -20.43564 -19.66682 -18.76033 -18.51629 -17.80737 -17.55410 -17.12328 -17.08435 -16.89435 -16.68996 -16.41650 -16.38340 -16.19627 -15.75233 -15.42943 -15.31975 -14.87434 -14.36660 -14.24866 -13.99948 -13.94016 -13.36459 -13.29536 -13.16871 -13.09423 -12.96953 -12.77715 -12.55293 -12.39082 -12.12110 -11.95047 -11.50296 -11.49173 -11.21722 -11.02978 -10.56216 -10.22426 -9.87871 -9.50498 -9.03041 -8.17726 -6.26111 -0.20432 -0.13692 1.36905 1.44019 1.44222 1.47673 1.55240 1.73459 2.30100 2.42708 2.81434 3.15389 3.24170 3.34020 3.69675 3.78866 3.80349 3.90455 3.99608 4.11697 4.13781 4.28448 4.42649 4.56338 4.66551 4.70113 4.76604 4.86088 4.90947 4.96868 4.98676 5.01728 5.08157 5.18322 5.28164 5.29027 5.68591 5.70144 5.78872 6.02501 6.08011 6.21415 6.33073 6.61127 6.89589 6.94860 7.43105 8.92983 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.002615 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.001143 B =10703.553870 C =12325.998684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.084 3.916 4 N -0.531 5.531 5 C 0.203 3.797 6 C -0.519 4.519 7 H 0.062 0.938 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.073 3.927 15 C -0.126 4.126 16 C 0.527 3.473 17 O -0.551 6.551 18 N -0.659 5.659 19 C 0.201 3.799 20 C -0.181 4.181 21 C 0.147 3.853 22 F -0.128 7.128 23 C -0.202 4.202 24 C 0.138 3.862 25 F -0.135 7.135 26 C -0.183 4.183 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.026 0.974 33 H -0.046 1.046 34 H 0.263 0.737 35 H 0.010 0.990 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.436 0.564 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -16.393 3.931 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C -0.044 4.044 4 N -0.255 5.255 5 C 0.077 3.923 6 C -0.557 4.557 7 H 0.080 0.920 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.056 4.056 15 C -0.166 4.166 16 C 0.316 3.684 17 O -0.428 6.428 18 N -0.306 5.306 19 C 0.105 3.895 20 C -0.202 4.202 21 C 0.127 3.873 22 F -0.106 7.106 23 C -0.223 4.223 24 C 0.118 3.882 25 F -0.113 7.113 26 C -0.204 4.204 27 H 0.138 0.862 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.044 0.956 33 H -0.028 1.028 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.720 -16.647 3.562 19.603 hybrid contribution 0.125 1.247 -0.317 1.292 sum 9.845 -15.400 3.244 18.564 Atomic orbital electron populations 1.23921 0.95488 1.02339 1.00377 1.22842 0.96271 0.97293 1.00018 1.21143 0.95568 0.96826 0.90853 1.62099 1.14623 1.11322 1.37468 1.19509 0.95771 0.83617 0.93436 1.21437 0.95792 0.95258 1.43238 0.91965 1.25811 0.98743 0.98749 0.95968 1.70068 1.24874 1.12615 1.49710 0.85485 0.79566 0.77341 0.78862 1.19666 1.21231 1.19119 1.21756 0.90914 0.97919 0.94998 1.21591 0.92684 1.01571 1.00736 1.21109 0.84965 0.78394 0.83893 1.90695 1.75753 1.52287 1.24019 1.43447 1.15912 1.58662 1.12609 1.17104 0.86083 0.91153 0.95147 1.21072 0.89597 1.04087 1.05463 1.16868 0.82912 0.95714 0.91802 1.91555 1.51300 1.91335 1.76449 1.21136 1.00275 1.02103 0.98740 1.17076 0.93763 0.89065 0.88257 1.91523 1.96912 1.62238 1.60645 1.21301 0.98693 0.98209 1.02186 0.86223 0.89314 0.86653 0.91372 0.95766 0.95620 1.02795 0.92785 0.97124 0.89911 0.85288 0.88227 0.72385 0.81138 0.81471 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.99 14.32 67.79 0.97 -4.02 16 2 C -0.15 -4.48 9.35 25.65 0.24 -4.24 16 3 C 0.08 3.22 5.26 85.56 0.45 3.67 16 4 N -0.53 -21.62 4.41 -905.34 -3.99 -25.62 16 5 C 0.20 10.15 4.59 85.56 0.39 10.55 16 6 C -0.52 -27.98 8.24 25.60 0.21 -27.77 16 7 H 0.06 3.32 7.31 -2.91 -0.02 3.30 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -53.94 13.29 21.45 0.28 -53.65 16 10 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 C 0.07 2.52 4.12 86.30 0.36 2.87 16 15 C -0.13 -3.48 5.76 29.85 0.17 -3.31 16 16 C 0.53 13.76 7.68 87.66 0.67 14.43 16 17 O -0.55 -18.17 13.36 -3.05 -0.04 -18.21 16 18 N -0.66 -12.47 5.33 -303.55 -1.62 -14.09 16 19 C 0.20 4.06 6.30 38.14 0.24 4.30 16 20 C -0.18 -2.97 9.94 22.44 0.22 -2.75 16 21 C 0.15 2.53 7.29 22.35 0.16 2.69 16 22 F -0.13 -2.23 17.27 44.97 0.78 -1.45 16 23 C -0.20 -3.52 10.00 22.38 0.22 -3.29 16 24 C 0.14 2.95 7.30 22.35 0.16 3.11 16 25 F -0.13 -3.07 17.27 44.97 0.78 -2.30 16 26 C -0.18 -4.26 8.68 22.44 0.19 -4.07 16 27 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.09 2.54 7.84 -2.91 -0.02 2.52 16 29 H 0.12 3.15 7.26 -2.91 -0.02 3.13 16 30 H 0.07 2.92 6.22 -2.39 -0.01 2.91 16 31 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 32 H 0.03 1.32 6.07 -2.39 -0.01 1.31 16 33 H -0.05 -2.59 8.12 -2.38 -0.02 -2.60 16 34 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.01 0.41 7.95 -2.39 -0.02 0.39 16 36 H 0.08 2.62 6.91 -2.38 -0.02 2.60 16 37 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 38 H 0.10 3.01 6.24 -2.39 -0.01 3.00 16 39 H 0.44 5.13 8.82 -92.71 -0.82 4.32 16 40 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.14 3.84 6.22 -2.91 -0.02 3.82 16 Total: -1.00 -65.95 363.64 3.59 -62.36 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.24 Total: 15.21 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.13 Total: -7.05 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -5.33 Total: -93.36 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.04 Total: -18.21 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 1.55 Total: -3.75 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -65.95 3.59 -62.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.670 kcal (2) G-P(sol) polarization free energy of solvation -65.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds