Wall clock time and date at job start Tue Mar 31 2020 14:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 119.99535 * 2 1 4 4 N 1.46901 * 109.47182 * 124.62706 * 3 2 1 5 5 C 1.46897 * 110.99900 * 199.66682 * 4 3 2 6 6 C 1.50703 * 109.47537 * 66.04215 * 5 4 3 7 7 H 1.08002 * 119.99100 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00396 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99814 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00138 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47074 * 90.00332 * 10 8 6 12 12 H 1.48508 * 109.47137 * 209.99889 * 10 8 6 13 13 H 1.48501 * 109.47079 * 329.99703 * 10 8 6 14 14 C 1.46896 * 111.00153 * 75.71229 * 4 3 2 15 15 C 1.50707 * 109.47002 * 199.97866 * 14 4 3 16 16 O 1.21278 * 119.99857 * 355.78248 * 15 14 4 17 17 N 1.34776 * 119.99824 * 175.79250 * 15 14 4 18 18 C 1.46498 * 119.99822 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47295 * 179.97438 * 18 17 15 20 20 C 1.38213 * 119.96904 * 269.72349 * 19 18 17 21 21 C 1.38469 * 120.02113 * 179.76977 * 20 19 18 22 22 F 1.35100 * 120.01484 * 180.27044 * 21 20 19 23 23 C 1.38421 * 119.97441 * 0.52046 * 21 20 19 24 24 C 1.38415 * 119.95160 * 359.73572 * 23 21 20 25 25 F 1.35101 * 120.01596 * 179.97438 * 24 23 21 26 26 C 1.38203 * 119.97876 * 89.99394 * 19 18 17 27 27 H 1.07999 * 120.00527 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99852 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00527 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47688 * 4.62113 * 3 2 1 31 31 H 1.09006 * 109.46941 * 244.62109 * 3 2 1 32 32 H 1.09001 * 109.47252 * 186.04237 * 5 4 3 33 33 H 1.09002 * 109.47310 * 306.04165 * 5 4 3 34 34 H 0.97002 * 119.99648 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47494 * 79.97726 * 14 4 3 36 36 H 1.09001 * 109.47480 * 319.97374 * 14 4 3 37 37 H 0.96996 * 119.99949 * 359.97438 * 17 15 14 38 38 H 1.08998 * 109.47307 * 59.99042 * 18 17 15 39 39 H 1.09010 * 109.46873 * 299.99386 * 18 17 15 40 40 H 1.08000 * 119.98748 * 359.97438 * 20 19 18 41 41 H 1.08009 * 120.02340 * 179.70255 * 23 21 20 42 42 H 1.08001 * 119.98443 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 7 2.9897 1.3358 1.1397 5 6 3.3896 2.7135 1.4561 6 6 2.1913 3.4842 1.9472 7 1 1.2291 2.9989 2.0176 8 6 2.3237 4.8084 2.3076 9 7 3.4957 5.3991 2.2223 10 14 0.8385 5.7635 2.9170 11 1 0.7355 5.6301 4.3923 12 1 0.9908 7.1968 2.5591 13 1 -0.3913 5.2232 2.2839 14 6 4.1648 0.4917 0.8858 15 6 4.8287 0.1481 2.1944 16 8 4.4143 0.6270 3.2287 17 7 5.8830 -0.6912 2.2152 18 6 6.5287 -1.0248 3.4872 19 6 7.6716 -1.9746 3.2366 20 6 7.4533 -3.3391 3.2609 21 6 8.5017 -4.2127 3.0260 22 9 8.2870 -5.5464 3.0444 23 6 9.7708 -3.7191 2.7776 24 6 9.9892 -2.3524 2.7588 25 9 11.2275 -1.8692 2.5169 26 6 8.9382 -1.4806 2.9882 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3580 2.1320 0.0828 31 1 2.6265 1.3996 -0.9285 32 1 4.1558 2.7005 2.2312 33 1 3.7869 3.1913 0.5605 34 1 3.5887 6.3308 2.4755 35 1 4.8690 1.0303 0.2516 36 1 3.8526 -0.4248 0.3852 37 1 6.2143 -1.0744 1.3880 38 1 5.8033 -1.4965 4.1502 39 1 6.9076 -0.1145 3.9521 40 1 6.4640 -3.7241 3.4598 41 1 10.5901 -4.3999 2.5991 42 1 9.1083 -0.4142 2.9734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428862123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:25 Heat of formation + Delta-G solvation = -69.084893 kcal Electronic energy + Delta-G solvation = -26198.404206 eV Core-core repulsion = 22008.374689 eV Total energy + Delta-G solvation = -4190.029517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.40976 -49.38128 -39.89313 -38.95365 -36.68358 -34.73418 -33.10922 -32.25247 -31.67918 -30.78134 -28.51556 -26.91527 -25.97335 -23.85925 -23.29313 -22.21597 -21.02903 -20.11066 -19.15002 -18.27808 -17.63240 -16.84640 -16.75352 -16.46156 -16.37916 -16.12546 -15.74844 -15.69393 -15.14271 -14.82439 -14.70623 -14.54400 -13.91359 -13.80255 -13.61957 -13.32269 -13.18502 -12.54193 -12.37809 -12.35421 -12.23890 -12.06816 -11.78797 -11.70445 -11.34528 -11.09994 -10.75503 -10.59386 -10.25460 -9.91971 -9.64460 -9.29682 -9.20815 -9.07910 -8.94203 -8.87594 -8.35554 -7.26488 -5.95610 -3.94974 0.42931 0.51520 2.69783 2.78852 3.12696 3.34037 3.37535 3.43182 3.46185 3.52768 3.90800 4.03486 4.35668 4.47661 4.49057 4.67769 5.00086 5.11483 5.14881 5.29734 5.33889 5.38318 5.42155 5.51040 5.56521 5.58245 5.65486 5.69979 5.75378 5.93054 6.07635 6.25696 6.29379 6.50838 6.52731 7.01638 7.24559 7.29454 7.31007 7.66406 7.86162 8.15660 8.20716 8.54826 8.70244 9.11084 9.67664 11.15819 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002581 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.483947 B =10844.689773 C =12044.448951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C 0.083 3.917 4 N -0.515 5.515 5 C 0.194 3.806 6 C -0.500 4.500 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.037 3.963 15 C 0.512 3.488 16 O -0.494 6.494 17 N -0.742 5.742 18 C 0.161 3.839 19 C -0.042 4.042 20 C -0.146 4.146 21 C 0.129 3.871 22 F -0.130 7.130 23 C -0.189 4.189 24 C 0.130 3.870 25 F -0.129 7.129 26 C -0.145 4.145 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.043 0.957 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.397 0.603 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 -19.468 -2.637 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.152 4.152 3 C -0.044 4.044 4 N -0.240 5.240 5 C 0.070 3.930 6 C -0.538 4.538 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.095 4.095 15 C 0.297 3.703 16 O -0.365 6.365 17 N -0.399 5.399 18 C 0.038 3.962 19 C -0.043 4.043 20 C -0.165 4.165 21 C 0.109 3.891 22 F -0.109 7.109 23 C -0.209 4.209 24 C 0.111 3.889 25 F -0.108 7.108 26 C -0.164 4.164 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.836 -19.099 -1.410 22.004 hybrid contribution 0.276 0.411 -0.713 0.868 sum 11.112 -18.688 -2.123 21.846 Atomic orbital electron populations 1.23707 0.95981 1.01278 1.02644 1.22958 0.95954 0.98290 0.98011 1.21232 0.96103 0.95831 0.91274 1.61854 1.11755 1.14320 1.36038 1.19833 0.97425 0.80485 0.95291 1.21105 0.95341 0.94659 1.42721 0.91908 1.24956 0.95977 0.97713 0.95963 1.69961 1.22895 1.12079 1.49058 0.86519 0.82925 0.78806 0.79271 1.20651 1.21432 1.19896 1.21901 0.94772 0.99516 0.93287 1.20885 0.79143 0.77905 0.92319 1.90779 1.61746 1.49705 1.34276 1.46068 1.34222 1.50642 1.08935 1.20129 0.91472 0.97114 0.87515 1.19622 0.94356 0.93278 0.97010 1.21207 0.99608 0.92592 1.03112 1.17236 0.93314 0.77683 1.00821 1.91550 1.95392 1.30158 1.93765 1.21076 0.97741 0.95038 1.07069 1.17245 0.80345 0.91173 1.00170 1.91556 1.39295 1.88404 1.91529 1.21249 0.91517 1.01221 1.02458 0.88505 0.89281 0.88544 0.88562 0.95177 0.93871 0.99524 0.93067 0.92552 0.89478 0.76975 0.89996 0.89898 0.83547 0.83374 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.92 14.32 29.02 0.42 -2.51 16 2 C -0.13 -2.10 9.33 -36.02 -0.34 -2.44 16 3 C 0.08 1.56 5.24 -4.97 -0.03 1.53 16 4 N -0.52 -11.03 4.00 -238.96 -0.96 -11.99 16 5 C 0.19 5.12 4.33 -4.98 -0.02 5.10 16 6 C -0.50 -14.35 8.23 -34.44 -0.28 -14.63 16 7 H 0.06 1.80 7.31 -52.49 -0.38 1.41 16 8 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 10 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.04 0.62 5.30 -4.97 -0.03 0.59 16 15 C 0.51 8.74 7.57 -10.98 -0.08 8.66 16 16 O -0.49 -11.12 15.06 5.56 0.08 -11.04 16 17 N -0.74 -8.74 5.55 -61.47 -0.34 -9.08 16 18 C 0.16 1.70 5.80 -5.19 -0.03 1.67 16 19 C -0.04 -0.35 5.25 -104.64 -0.55 -0.90 16 20 C -0.15 -1.13 9.68 -39.51 -0.38 -1.51 16 21 C 0.13 1.04 7.30 -39.43 -0.29 0.75 16 22 F -0.13 -1.14 17.27 2.25 0.04 -1.11 16 23 C -0.19 -1.44 10.01 -39.45 -0.39 -1.84 16 24 C 0.13 1.09 7.30 -39.43 -0.29 0.80 16 25 F -0.13 -1.20 17.27 2.25 0.04 -1.16 16 26 C -0.15 -1.19 9.68 -39.51 -0.38 -1.57 16 27 H 0.10 1.47 7.84 -52.49 -0.41 1.06 16 28 H 0.09 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.10 1.33 7.28 -52.49 -0.38 0.95 16 30 H 0.10 2.03 6.23 -51.93 -0.32 1.71 16 31 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 32 H 0.04 1.27 6.60 -51.93 -0.34 0.92 16 33 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 36 H 0.09 1.15 6.81 -51.93 -0.35 0.80 16 37 H 0.40 3.51 8.46 -40.82 -0.35 3.16 16 38 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.08 0.96 8.09 -51.92 -0.42 0.54 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -33.87 369.41 -8.09 -41.96 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.46 Total: 1.00 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.77 Total: -4.81 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.56 Total: -47.59 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.87 -8.09 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428862123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.127 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds