Wall clock time and date at job start Tue Mar 31 2020 13:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46946 * 2 1 4 4 C 1.52996 * 109.46706 * 120.00017 * 2 1 3 5 5 C 1.50698 * 109.47134 * 239.99626 * 2 1 3 6 6 N 1.28880 * 121.20101 * 254.71853 * 5 2 1 7 7 C 1.33628 * 117.02963 * 179.80499 * 6 5 2 8 8 N 1.33871 * 127.41581 * 180.15786 * 7 6 5 9 9 C 1.33339 * 120.00466 * 180.29124 * 8 7 6 10 10 O 1.21922 * 119.99430 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00040 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99585 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46708 * 178.10952 * 12 11 9 14 14 C 1.50696 * 115.55166 * 65.14776 * 13 12 11 15 15 H 1.08006 * 119.99953 * 265.36477 * 14 13 12 16 16 C 1.37872 * 120.00491 * 85.35425 * 14 13 12 17 17 N 1.31519 * 119.99621 * 353.50275 * 16 14 13 18 18 Si 1.86804 * 120.00334 * 173.49898 * 16 14 13 19 19 H 1.48493 * 109.47031 * 90.00380 * 18 16 14 20 20 H 1.48497 * 109.46935 * 210.00280 * 18 16 14 21 21 H 1.48493 * 109.46734 * 330.00438 * 18 16 14 22 22 C 1.52995 * 117.49965 * 279.47234 * 13 12 11 23 23 C 1.52999 * 117.49632 * 210.81529 * 13 12 11 24 24 S 1.72304 * 105.17199 * 0.41633 * 7 6 5 25 25 N 1.33555 * 121.19291 * 75.00357 * 5 2 1 26 26 H 0.97002 * 127.19473 * 359.97438 * 25 5 2 27 27 H 1.09000 * 109.46899 * 60.00343 * 1 2 3 28 28 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47442 * 300.00557 * 1 2 3 30 30 H 1.09001 * 109.47312 * 60.00177 * 3 2 1 31 31 H 1.09000 * 109.46834 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47513 * 299.99794 * 3 2 1 33 33 H 1.08999 * 109.47581 * 59.99941 * 4 2 1 34 34 H 1.09000 * 109.47177 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47365 * 299.99709 * 4 2 1 36 36 H 0.96997 * 120.00133 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47681 * 298.10989 * 12 11 9 38 38 H 1.08999 * 109.47136 * 58.11711 * 12 11 9 39 39 H 0.97001 * 119.99809 * 185.06528 * 17 16 14 40 40 H 1.08998 * 117.50069 * 0.02562 * 22 13 12 41 41 H 1.08995 * 117.49926 * 145.02292 * 22 13 12 42 42 H 1.09004 * 117.49657 * 214.98426 * 23 13 12 43 43 H 1.08997 * 117.49966 * 359.96907 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0324 -0.7105 -1.2304 6 7 2.5289 -1.8977 -1.1599 7 6 2.9453 -2.4507 -2.3029 8 7 3.4869 -3.6635 -2.4697 9 6 3.8576 -4.0667 -3.6854 10 8 3.7029 -3.3308 -4.6452 11 7 4.4033 -5.2875 -3.8533 12 6 4.8102 -5.7306 -5.1891 13 6 5.4380 -7.1228 -5.0953 14 6 4.5096 -8.2265 -4.6587 15 1 4.4595 -8.5099 -3.6177 16 6 3.7238 -8.8744 -5.5880 17 7 3.6880 -8.4470 -6.8313 18 14 2.7100 -10.3594 -5.0814 19 1 1.3691 -9.9116 -4.6270 20 1 2.5597 -11.2750 -6.2408 21 1 3.3956 -11.0720 -3.9735 22 6 6.8987 -7.2103 -4.6487 23 6 6.5276 -7.4761 -6.1097 24 16 2.6420 -1.2639 -3.5147 25 7 1.9842 -0.1302 -2.4323 26 1 1.6448 0.7536 -2.6436 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 -1.7489 1.2493 34 1 3.1299 -0.7209 1.2495 35 1 1.6766 -0.2074 2.1392 36 1 4.5260 -5.8731 -3.0897 37 1 3.9373 -5.7689 -5.8408 38 1 5.5386 -5.0304 -5.5980 39 1 3.0805 -8.8559 -7.4674 40 1 7.4124 -6.2763 -4.4212 41 1 7.1882 -8.0664 -4.0394 42 1 6.5730 -8.5069 -6.4610 43 1 6.7967 -6.7170 -6.8441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432090480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:54 Heat of formation + Delta-G solvation = 57.476013 kcal Electronic energy + Delta-G solvation = -24739.913216 eV Core-core repulsion = 21141.504930 eV Total energy + Delta-G solvation = -3598.408287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10604 -39.42019 -36.91527 -36.51423 -34.28888 -33.17751 -32.24198 -31.89776 -27.91731 -27.69482 -26.69270 -25.58903 -24.82501 -22.02913 -21.14019 -20.97300 -19.59790 -19.30953 -18.72264 -17.37796 -17.25092 -16.06143 -15.95704 -15.54134 -15.11464 -14.87252 -14.56363 -14.45790 -14.14414 -13.98302 -13.23939 -12.86595 -12.69460 -12.64877 -12.51893 -12.18219 -12.03192 -11.75838 -11.55615 -11.50119 -11.43591 -11.43377 -10.95389 -10.93420 -10.87105 -10.46236 -10.21076 -9.93821 -9.77214 -9.52427 -8.92096 -8.88548 -8.44321 -8.39706 -8.13748 -7.62690 -6.01739 -4.09537 0.35492 0.49390 1.48134 2.31107 3.02300 3.32029 3.38747 3.42054 3.81594 3.94509 4.13385 4.18489 4.31755 4.41946 4.53081 4.76442 4.96324 5.11118 5.18298 5.26284 5.31250 5.38510 5.44258 5.49918 5.56804 5.72700 5.89833 6.04984 6.10096 6.35089 6.40663 6.52606 6.62388 6.76550 6.90269 7.00658 7.14477 7.34954 7.48332 7.53796 7.70754 7.88733 8.40631 8.43776 8.91345 9.19622 9.56964 11.06211 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.002738 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.449305 B =10223.221951 C =10692.032968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 C -0.147 4.147 4 C -0.131 4.131 5 C 0.405 3.595 6 N -0.527 5.527 7 C 0.390 3.610 8 N -0.558 5.558 9 C 0.656 3.344 10 O -0.608 6.608 11 N -0.674 5.674 12 C 0.174 3.826 13 C 0.027 3.973 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.073 3.927 17 N -0.876 5.876 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.209 4.209 23 C -0.146 4.146 24 S 0.272 5.728 25 N -0.711 5.711 26 H 0.443 0.557 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 22.495 13.355 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.189 4.189 5 C 0.120 3.880 6 N -0.259 5.259 7 C 0.007 3.993 8 N -0.311 5.311 9 C 0.352 3.648 10 O -0.492 6.492 11 N -0.322 5.322 12 C 0.051 3.949 13 C 0.026 3.974 14 C -0.537 4.537 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.512 5.512 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.247 4.247 23 C -0.184 4.184 24 S 0.405 5.595 25 N -0.437 5.437 26 H 0.287 0.713 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.440 21.786 12.088 25.502 hybrid contribution -0.959 -0.213 0.300 1.027 sum -6.399 21.573 12.388 25.687 Atomic orbital electron populations 1.21942 0.91583 1.03600 1.02974 1.19707 0.96776 0.94804 0.89828 1.21989 1.02212 0.93195 1.03069 1.21764 1.02089 1.01283 0.93748 1.23303 0.88137 0.87691 0.88893 1.67615 1.24736 1.08640 1.24945 1.25545 0.91065 0.93148 0.89518 1.68298 1.27241 1.10496 1.25030 1.16918 0.79929 0.84173 0.83790 1.90717 1.61208 1.54343 1.42887 1.44891 1.60927 1.13852 1.12532 1.21010 0.98901 0.94010 0.80985 1.19020 0.86486 0.92352 0.99533 1.20373 1.23246 1.16112 0.93924 0.92050 1.24987 0.96430 0.96901 0.94740 1.69983 1.36350 1.41598 1.03308 0.86614 0.80521 0.82932 0.78130 1.20653 1.21208 1.19743 1.23021 1.02130 1.00580 0.98929 1.22490 1.04849 1.00861 0.90249 1.86948 1.62398 1.05464 1.04693 1.48519 1.61187 1.23102 1.10882 0.71334 0.92266 0.91235 0.90435 0.90285 0.91487 0.92399 0.90545 0.91657 0.91747 0.75694 0.90882 0.94399 0.92919 0.91606 0.90253 0.89756 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.46 37.16 0.31 -0.36 16 2 C -0.01 -0.04 0.98 -155.66 -0.15 -0.19 16 3 C -0.15 -0.54 8.25 37.15 0.31 -0.23 16 4 C -0.13 -0.89 7.86 37.16 0.29 -0.60 16 5 C 0.41 4.01 6.18 -158.09 -0.98 3.03 16 6 N -0.53 -7.54 9.44 -12.99 -0.12 -7.66 16 7 C 0.39 6.83 8.37 -88.75 -0.74 6.09 16 8 N -0.56 -11.59 10.61 -17.83 -0.19 -11.78 16 9 C 0.66 14.89 8.46 -88.19 -0.75 14.15 16 10 O -0.61 -14.43 13.90 4.99 0.07 -14.36 16 11 N -0.67 -15.42 5.48 -65.54 -0.36 -15.78 16 12 C 0.17 4.27 5.50 -4.04 -0.02 4.25 16 13 C 0.03 0.67 1.38 -155.66 -0.21 0.45 16 14 C -0.50 -13.53 8.63 -34.44 -0.30 -13.83 16 15 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 16 C 0.07 2.02 5.39 -17.82 -0.10 1.93 16 17 N -0.88 -25.08 12.92 55.43 0.72 -24.37 16 18 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.21 -4.60 9.96 -26.70 -0.27 -4.87 16 23 C -0.15 -3.46 9.42 -26.70 -0.25 -3.72 16 24 S 0.27 3.87 20.96 -107.50 -2.25 1.62 16 25 N -0.71 -6.10 6.49 31.30 0.20 -5.90 16 26 H 0.44 2.04 8.04 -40.82 -0.33 1.71 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.13 7.23 -51.93 -0.38 -0.24 16 33 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.41 9.01 8.46 -40.82 -0.35 8.67 16 37 H 0.07 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -33.64 373.08 -10.69 -44.33 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.50 Total: 5.78 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -2.85 Total: 6.10 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: 0.25 Total: -65.48 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.07 Total: -14.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.25 Total: 1.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.64 -10.69 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432090480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.807 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds