Wall clock time and date at job start Tue Mar 31 2020 13:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 C 1.53002 * 109.47040 * 300.00539 * 3 2 1 5 5 C 1.53003 * 109.46903 * 60.00112 * 3 2 1 6 6 C 1.52996 * 109.47039 * 65.00396 * 5 3 2 7 7 N 1.46497 * 109.47242 * 180.02562 * 3 2 1 8 8 C 1.34778 * 119.99998 * 180.02562 * 7 3 2 9 9 O 1.21582 * 120.00122 * 359.97438 * 8 7 3 10 10 N 1.34774 * 119.99826 * 180.27140 * 8 7 3 11 11 C 1.39282 * 119.99821 * 175.46702 * 10 8 7 12 12 C 1.39467 * 119.83300 * 34.74351 * 11 10 8 13 13 C 1.36381 * 120.17235 * 179.71441 * 12 11 10 14 14 C 1.40885 * 119.85079 * 0.55137 * 13 12 11 15 15 C 1.41151 * 120.15987 * 179.74118 * 14 13 12 16 16 H 1.08003 * 119.99631 * 34.75318 * 15 14 13 17 17 C 1.39891 * 120.00371 * 214.75435 * 15 14 13 18 18 N 1.30881 * 119.99830 * 355.59017 * 17 15 14 19 19 Si 1.86801 * 120.00243 * 175.59042 * 17 15 14 20 20 H 1.48500 * 109.47014 * 89.99936 * 19 17 15 21 21 H 1.48499 * 109.46820 * 209.99770 * 19 17 15 22 22 H 1.48498 * 109.47207 * 330.00038 * 19 17 15 23 23 C 1.40841 * 119.68353 * 359.72325 * 14 13 12 24 24 C 1.36479 * 119.81800 * 359.97438 * 23 14 13 25 25 Cl 1.73600 * 119.92406 * 179.97438 * 24 23 14 26 26 H 1.09005 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47152 * 299.99146 * 1 2 3 28 28 H 1.08997 * 109.47457 * 59.99953 * 1 2 3 29 29 H 1.09007 * 109.46835 * 240.00204 * 2 1 3 30 30 H 1.08997 * 109.46981 * 120.00280 * 2 1 3 31 31 H 1.09007 * 109.47033 * 299.99824 * 4 3 2 32 32 H 1.09001 * 109.47415 * 59.99865 * 4 3 2 33 33 H 1.08998 * 109.47110 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47067 * 185.00285 * 5 3 2 35 35 H 1.09000 * 109.47263 * 304.99981 * 5 3 2 36 36 H 1.09000 * 109.47432 * 59.99688 * 6 5 3 37 37 H 1.08994 * 109.47181 * 180.02562 * 6 5 3 38 38 H 1.09005 * 109.47100 * 299.99869 * 6 5 3 39 39 H 0.96994 * 119.99871 * 359.97438 * 7 3 2 40 40 H 0.97001 * 120.00483 * 355.47609 * 10 8 7 41 41 H 1.07997 * 119.91426 * 359.97005 * 12 11 10 42 42 H 1.08005 * 120.07354 * 180.24317 * 13 12 11 43 43 H 0.96993 * 120.00399 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.09218 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 2.1401 1.5187 2.4953 7 7 3.5050 1.4425 -0.0006 8 6 4.1788 2.6097 -0.0002 9 8 3.5709 3.6626 0.0002 10 7 5.5266 2.6097 -0.0063 11 6 6.2225 3.8124 -0.1012 12 6 5.7112 4.9596 0.5051 13 6 6.3899 6.1396 0.4214 14 6 7.6047 6.2010 -0.2894 15 6 8.3097 7.4202 -0.3848 16 1 8.3029 8.1139 0.4429 17 6 9.0171 7.7298 -1.5512 18 7 9.0971 6.8535 -2.5201 19 14 9.8474 9.3939 -1.7262 20 1 11.2349 9.3122 -1.2032 21 1 9.8805 9.7823 -3.1591 22 1 9.0869 10.4101 -0.9552 23 6 8.1125 5.0401 -0.9042 24 6 7.4256 3.8648 -0.8069 25 17 8.0486 2.4323 -1.5641 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 1.6499 -2.1393 32 1 0.4399 2.1638 -1.2492 33 1 1.8928 3.1915 -1.2490 34 1 1.8183 3.2140 1.2056 35 1 0.4437 2.0868 1.2952 36 1 3.2265 1.5956 2.4493 37 1 1.7765 2.0321 3.3853 38 1 1.8518 0.4684 2.5389 39 1 3.9899 0.6025 -0.0006 40 1 6.0119 1.7721 0.0553 41 1 4.7775 4.9125 1.0457 42 1 5.9944 7.0262 0.8949 43 1 9.5879 7.0679 -3.3287 44 1 9.0433 5.0796 -1.4504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455697321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:47 Heat of formation + Delta-G solvation = -28.366138 kcal Electronic energy + Delta-G solvation = -25584.446747 eV Core-core repulsion = 21947.979607 eV Total energy + Delta-G solvation = -3636.467139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38979 -38.38258 -36.95662 -35.47902 -34.32657 -33.23171 -32.39031 -31.29700 -29.45043 -29.22112 -28.50928 -25.33970 -24.37459 -23.37134 -21.89941 -21.02344 -20.07197 -19.06315 -17.98328 -17.37157 -16.67550 -15.63168 -15.37439 -15.19955 -15.03277 -14.44218 -14.25553 -13.91031 -13.38883 -13.25779 -12.98732 -12.92274 -12.58312 -12.51192 -12.27808 -12.17667 -11.96024 -11.63472 -11.58564 -11.39037 -11.29172 -11.12927 -11.06893 -10.90783 -10.63541 -10.52471 -10.46407 -10.27711 -9.91306 -9.72897 -9.43447 -9.16410 -8.91303 -8.79465 -7.50267 -6.93839 -6.67788 -4.42294 2.49866 2.88585 3.02308 3.07606 3.09461 3.13881 3.25360 3.72704 3.94287 4.53626 4.61061 4.65261 4.75966 4.93107 5.20500 5.20717 5.34671 5.44850 5.48860 5.58750 5.69276 5.71542 5.80842 5.86634 5.97216 6.05285 6.12471 6.23078 6.26029 6.45669 6.49388 6.54652 6.75070 6.83514 6.90718 7.04977 7.15607 7.31957 7.39773 7.74696 7.75844 7.97264 8.15273 8.47474 8.47676 8.79863 8.84024 9.11686 10.22695 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.003101 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.340661 B = 9028.223449 C = 9626.151100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.198 3.802 4 C -0.166 4.166 5 C -0.138 4.138 6 C -0.146 4.146 7 N -0.743 5.743 8 C 0.702 3.298 9 O -0.573 6.573 10 N -0.668 5.668 11 C 0.036 3.964 12 C -0.076 4.076 13 C -0.200 4.200 14 C 0.106 3.894 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.069 3.931 18 N -0.806 5.806 19 Si 0.917 3.083 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.135 4.135 24 C -0.025 4.025 25 Cl -0.122 7.122 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.390 0.610 40 H 0.393 0.607 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.280 0.720 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -12.684 3.977 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.112 3.888 4 C -0.224 4.224 5 C -0.177 4.177 6 C -0.203 4.203 7 N -0.399 5.399 8 C 0.403 3.597 9 O -0.450 6.450 10 N -0.315 5.315 11 C -0.058 4.058 12 C -0.096 4.096 13 C -0.220 4.220 14 C 0.103 3.897 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.147 4.147 18 N -0.433 5.433 19 Si 0.742 3.258 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.156 4.156 24 C -0.054 4.054 25 Cl -0.094 7.094 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.223 0.777 40 H 0.227 0.773 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.886 -11.872 3.653 16.516 hybrid contribution 0.943 -0.318 -0.404 1.074 sum -9.943 -12.190 3.250 16.062 Atomic orbital electron populations 1.21854 0.94763 1.01696 1.02590 1.21779 0.96897 0.95402 1.02365 1.20074 0.78275 0.94855 0.95604 1.22306 1.00556 1.03278 0.96307 1.22026 0.99804 1.02338 0.93492 1.21713 1.01338 0.99846 0.97392 1.45267 1.06399 1.06970 1.81286 1.15920 0.81658 0.84109 0.78047 1.90828 1.67306 1.29942 1.56948 1.42095 1.04200 1.08588 1.76570 1.16700 0.94758 0.86282 1.08074 1.20420 0.99173 0.91489 0.98526 1.20903 0.96410 0.96642 1.08080 1.17588 0.90199 0.92238 0.89716 1.19473 1.26187 1.02464 1.00614 0.90222 1.25910 0.94430 0.98998 0.95351 1.69740 1.33283 1.34531 1.05728 0.86161 0.79769 0.81674 0.78210 1.19455 1.20247 1.18648 1.21183 1.01521 0.88749 1.04141 1.20421 0.96714 0.87391 1.00843 1.98245 1.87637 1.41631 1.81849 0.92669 0.92039 0.92068 0.91584 0.91271 0.93051 0.92114 0.89825 0.89360 0.91528 0.92736 0.93217 0.93239 0.77698 0.77326 0.86194 0.88004 0.90872 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.21 37.16 0.34 -0.76 16 2 C -0.13 -1.05 4.86 -26.73 -0.13 -1.18 16 3 C 0.20 2.24 0.52 -131.82 -0.07 2.17 16 4 C -0.17 -2.09 8.05 37.16 0.30 -1.79 16 5 C -0.14 -1.64 4.46 -26.73 -0.12 -1.76 16 6 C -0.15 -1.58 9.45 37.16 0.35 -1.23 16 7 N -0.74 -9.35 4.18 -52.42 -0.22 -9.57 16 8 C 0.70 12.04 7.60 -86.92 -0.66 11.38 16 9 O -0.57 -11.71 9.99 5.29 0.05 -11.66 16 10 N -0.67 -11.89 5.02 -14.07 -0.07 -11.96 16 11 C 0.04 0.79 6.32 -83.52 -0.53 0.26 16 12 C -0.08 -1.75 8.61 -39.79 -0.34 -2.09 16 13 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 14 C 0.11 2.75 5.55 -106.81 -0.59 2.16 16 15 C -0.46 -11.82 9.02 -37.86 -0.34 -12.16 16 16 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 17 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 18 N -0.81 -20.68 10.59 55.54 0.59 -20.09 16 19 Si 0.92 18.66 29.56 -169.99 -5.03 13.64 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.14 -3.43 8.38 -39.23 -0.33 -3.76 16 24 C -0.03 -0.58 6.30 -39.72 -0.25 -0.83 16 25 Cl -0.12 -2.36 27.92 -51.86 -1.45 -3.80 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 28 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 33 H 0.08 1.36 6.16 -51.93 -0.32 1.04 16 34 H 0.09 1.35 6.32 -51.93 -0.33 1.02 16 35 H 0.07 0.68 6.17 -51.93 -0.32 0.36 16 36 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 39 H 0.39 3.91 8.49 -40.82 -0.35 3.56 16 40 H 0.39 5.96 8.07 -40.82 -0.33 5.63 16 41 H 0.12 2.73 6.18 -52.49 -0.32 2.40 16 42 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.14 3.80 6.13 -52.49 -0.32 3.47 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -28.06 355.98 -9.61 -37.67 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.01 Total: 13.65 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.85 Total: -13.24 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.30 Total: -41.62 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.05 Total: -11.66 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.45 Total: -3.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.06 -9.61 -37.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455697321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.305 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds