Wall clock time and date at job start Tue Mar 31 2020 13:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 C 1.53002 * 109.47040 * 300.00539 * 3 2 1 5 5 C 1.53003 * 109.46903 * 60.00112 * 3 2 1 6 6 C 1.52996 * 109.47039 * 65.00396 * 5 3 2 7 7 N 1.46497 * 109.47242 * 180.02562 * 3 2 1 8 8 C 1.34778 * 119.99998 * 180.02562 * 7 3 2 9 9 O 1.21582 * 120.00122 * 359.97438 * 8 7 3 10 10 N 1.34774 * 119.99826 * 180.27140 * 8 7 3 11 11 C 1.39282 * 119.99821 * 175.46702 * 10 8 7 12 12 C 1.39467 * 119.83300 * 34.74351 * 11 10 8 13 13 C 1.36381 * 120.17235 * 179.71441 * 12 11 10 14 14 C 1.40885 * 119.85079 * 0.55137 * 13 12 11 15 15 C 1.41151 * 120.15987 * 179.74118 * 14 13 12 16 16 H 1.08003 * 119.99631 * 34.75318 * 15 14 13 17 17 C 1.39891 * 120.00371 * 214.75435 * 15 14 13 18 18 N 1.30881 * 119.99830 * 355.59017 * 17 15 14 19 19 Si 1.86801 * 120.00243 * 175.59042 * 17 15 14 20 20 H 1.48500 * 109.47014 * 89.99936 * 19 17 15 21 21 H 1.48499 * 109.46820 * 209.99770 * 19 17 15 22 22 H 1.48498 * 109.47207 * 330.00038 * 19 17 15 23 23 C 1.40841 * 119.68353 * 359.72325 * 14 13 12 24 24 C 1.36479 * 119.81800 * 359.97438 * 23 14 13 25 25 Cl 1.73600 * 119.92406 * 179.97438 * 24 23 14 26 26 H 1.09005 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47152 * 299.99146 * 1 2 3 28 28 H 1.08997 * 109.47457 * 59.99953 * 1 2 3 29 29 H 1.09007 * 109.46835 * 240.00204 * 2 1 3 30 30 H 1.08997 * 109.46981 * 120.00280 * 2 1 3 31 31 H 1.09007 * 109.47033 * 299.99824 * 4 3 2 32 32 H 1.09001 * 109.47415 * 59.99865 * 4 3 2 33 33 H 1.08998 * 109.47110 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47067 * 185.00285 * 5 3 2 35 35 H 1.09000 * 109.47263 * 304.99981 * 5 3 2 36 36 H 1.09000 * 109.47432 * 59.99688 * 6 5 3 37 37 H 1.08994 * 109.47181 * 180.02562 * 6 5 3 38 38 H 1.09005 * 109.47100 * 299.99869 * 6 5 3 39 39 H 0.96994 * 119.99871 * 359.97438 * 7 3 2 40 40 H 0.97001 * 120.00483 * 355.47609 * 10 8 7 41 41 H 1.07997 * 119.91426 * 359.97005 * 12 11 10 42 42 H 1.08005 * 120.07354 * 180.24317 * 13 12 11 43 43 H 0.96993 * 120.00399 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.09218 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 2.1401 1.5187 2.4953 7 7 3.5050 1.4425 -0.0006 8 6 4.1788 2.6097 -0.0002 9 8 3.5709 3.6626 0.0002 10 7 5.5266 2.6097 -0.0063 11 6 6.2225 3.8124 -0.1012 12 6 5.7112 4.9596 0.5051 13 6 6.3899 6.1396 0.4214 14 6 7.6047 6.2010 -0.2894 15 6 8.3097 7.4202 -0.3848 16 1 8.3029 8.1139 0.4429 17 6 9.0171 7.7298 -1.5512 18 7 9.0971 6.8535 -2.5201 19 14 9.8474 9.3939 -1.7262 20 1 11.2349 9.3122 -1.2032 21 1 9.8805 9.7823 -3.1591 22 1 9.0869 10.4101 -0.9552 23 6 8.1125 5.0401 -0.9042 24 6 7.4256 3.8648 -0.8069 25 17 8.0486 2.4323 -1.5641 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 1.6499 -2.1393 32 1 0.4399 2.1638 -1.2492 33 1 1.8928 3.1915 -1.2490 34 1 1.8183 3.2140 1.2056 35 1 0.4437 2.0868 1.2952 36 1 3.2265 1.5956 2.4493 37 1 1.7765 2.0321 3.3853 38 1 1.8518 0.4684 2.5389 39 1 3.9899 0.6025 -0.0006 40 1 6.0119 1.7721 0.0553 41 1 4.7775 4.9125 1.0457 42 1 5.9944 7.0262 0.8949 43 1 9.5879 7.0679 -3.3287 44 1 9.0433 5.0796 -1.4504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455697321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:47 Heat of formation + Delta-G solvation = -43.190305 kcal Electronic energy + Delta-G solvation = -25585.089571 eV Core-core repulsion = 21947.979607 eV Total energy + Delta-G solvation = -3637.109963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71381 -39.88042 -38.35422 -37.20521 -35.99167 -34.85828 -33.63556 -32.14159 -31.27430 -30.75979 -29.75278 -26.96201 -25.42907 -24.26021 -23.60129 -22.75319 -21.57664 -20.10557 -19.52023 -19.07785 -18.14168 -17.21211 -16.56854 -16.53665 -16.04756 -15.92622 -15.78907 -15.38611 -14.73309 -14.62370 -14.36360 -14.29088 -14.05545 -13.73528 -13.50080 -13.36739 -13.16930 -12.90235 -12.82292 -12.79402 -12.65361 -12.56120 -12.23416 -12.10435 -12.00364 -11.94088 -11.69852 -11.56157 -11.39557 -11.37337 -11.14060 -10.75190 -10.54349 -9.96635 -9.36308 -8.74366 -8.51986 -6.36106 0.68457 0.99709 1.41239 1.41522 1.47992 1.55781 1.80450 2.23560 2.29133 2.76846 3.33197 3.56825 3.78233 3.96826 4.07744 4.36540 4.38468 4.51888 4.55747 4.65730 4.72108 4.74309 4.82599 4.93617 4.96251 4.98363 5.02820 5.11266 5.21767 5.24095 5.28343 5.31226 5.32910 5.33844 5.49874 5.50654 5.57581 5.72975 5.77332 5.91280 6.06939 6.20728 6.27591 6.55319 6.89958 6.92682 7.18538 7.73197 8.39931 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.003101 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.340661 B = 9028.223449 C = 9626.151100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.195 3.805 4 C -0.164 4.164 5 C -0.136 4.136 6 C -0.141 4.141 7 N -0.723 5.723 8 C 0.699 3.301 9 O -0.606 6.606 10 N -0.664 5.664 11 C 0.052 3.948 12 C -0.082 4.082 13 C -0.209 4.209 14 C 0.076 3.924 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.028 3.972 18 N -0.838 5.838 19 Si 0.989 3.011 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.260 1.260 23 C -0.152 4.152 24 C -0.033 4.033 25 Cl -0.089 7.089 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.407 0.593 40 H 0.408 0.592 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.286 0.714 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 -14.767 4.084 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.175 4.175 6 C -0.198 4.198 7 N -0.379 5.379 8 C 0.400 3.600 9 O -0.485 6.485 10 N -0.312 5.312 11 C -0.044 4.044 12 C -0.103 4.103 13 C -0.229 4.229 14 C 0.074 3.926 15 C -0.520 4.520 16 H 0.098 0.902 17 C -0.185 4.185 18 N -0.465 5.465 19 Si 0.810 3.190 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.184 1.184 23 C -0.173 4.173 24 C -0.062 4.062 25 Cl -0.060 7.060 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.242 0.758 40 H 0.244 0.756 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.869 -14.035 3.772 18.764 hybrid contribution 1.109 0.151 -0.426 1.198 sum -10.760 -13.885 3.345 17.882 Atomic orbital electron populations 1.21867 0.93717 1.02794 1.02522 1.21746 0.97640 0.92677 1.03502 1.20292 0.77079 0.97033 0.94709 1.22261 1.01915 1.00880 0.97104 1.21975 1.01116 1.00068 0.94318 1.21679 0.99995 1.01335 0.96814 1.45161 1.07086 1.06159 1.79533 1.16092 0.81241 0.84914 0.77740 1.90829 1.67817 1.31711 1.58182 1.41973 1.04635 1.07845 1.76771 1.16723 0.94273 0.87345 1.06023 1.20511 0.99143 0.91754 0.98876 1.21042 0.96301 0.97465 1.08128 1.17883 0.91069 0.92906 0.90791 1.19715 1.27824 1.02918 1.01558 0.90187 1.26760 0.94556 1.02626 0.94514 1.69817 1.34046 1.36370 1.06279 0.85090 0.78815 0.76840 0.78281 1.18490 1.19623 1.18395 1.21077 1.01509 0.89727 1.04954 1.20437 0.96890 0.88131 1.00714 1.98241 1.87288 1.39285 1.81227 0.91023 0.91948 0.92343 0.90690 0.89906 0.92897 0.90064 0.93907 0.93361 0.89604 0.94530 0.93156 0.90672 0.75759 0.75606 0.86003 0.87509 0.90360 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.21 71.98 0.66 -0.99 16 2 C -0.12 -1.53 4.86 30.59 0.15 -1.38 16 3 C 0.19 4.02 0.52 3.60 0.00 4.02 16 4 C -0.16 -3.96 8.05 71.98 0.58 -3.38 16 5 C -0.14 -3.06 4.46 30.59 0.14 -2.92 16 6 C -0.14 -2.79 9.45 71.98 0.68 -2.10 16 7 N -0.72 -16.95 4.18 -438.02 -1.83 -18.78 16 8 C 0.70 23.63 7.60 179.06 1.36 24.99 16 9 O -0.61 -25.24 9.99 -3.97 -0.04 -25.28 16 10 N -0.66 -23.12 5.02 -316.70 -1.59 -24.71 16 11 C 0.05 2.29 6.32 38.58 0.24 2.53 16 12 C -0.08 -3.89 8.61 22.13 0.19 -3.70 16 13 C -0.21 -10.55 9.74 22.48 0.22 -10.33 16 14 C 0.08 4.13 5.55 -21.28 -0.12 4.01 16 15 C -0.49 -26.22 9.02 23.39 0.21 -26.01 16 16 H 0.08 4.10 7.85 -2.91 -0.02 4.07 16 17 C 0.03 1.41 5.42 85.23 0.46 1.88 16 18 N -0.84 -44.03 10.59 21.82 0.23 -43.80 16 19 Si 0.99 38.64 29.56 68.60 2.03 40.67 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 C -0.15 -7.94 8.38 22.50 0.19 -7.75 16 24 C -0.03 -1.51 6.30 22.18 0.14 -1.37 16 25 Cl -0.09 -3.35 27.92 -2.72 -0.08 -3.43 16 26 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.68 6.32 -2.39 -0.02 0.67 16 28 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 31 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.08 1.59 6.43 -2.39 -0.02 1.57 16 33 H 0.04 1.41 6.16 -2.39 -0.01 1.39 16 34 H 0.05 1.50 6.32 -2.38 -0.02 1.48 16 35 H 0.09 1.57 6.17 -2.39 -0.01 1.56 16 36 H 0.04 0.85 7.29 -2.39 -0.02 0.83 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.09 6.57 -2.38 -0.02 1.08 16 39 H 0.41 6.99 8.49 -92.71 -0.79 6.20 16 40 H 0.41 11.67 8.07 -92.71 -0.75 10.92 16 41 H 0.12 5.69 6.18 -2.91 -0.02 5.67 16 42 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 43 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 44 H 0.13 6.99 6.13 -2.91 -0.02 6.97 16 Total: -1.00 -63.38 355.98 3.35 -60.03 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.48 Total: 37.81 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 5.11 Total: -22.52 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.19 Total: -87.29 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.04 Total: -25.28 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.08 Total: -3.43 kcal Total: -63.38 3.35 -60.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455697321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.841 kcal (2) G-P(sol) polarization free energy of solvation -63.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds