Wall clock time and date at job start Tue Mar 31 2020 14:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 C 1.53003 * 109.47513 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46555 * 54.99754 * 4 3 2 6 6 C 1.52996 * 109.47413 * 174.99708 * 4 3 2 7 7 N 1.46500 * 109.46991 * 295.00408 * 4 3 2 8 8 C 1.46506 * 119.99494 * 299.99166 * 7 4 3 9 9 C 1.34776 * 120.00430 * 119.99778 * 7 4 3 10 10 O 1.21583 * 119.99525 * 359.97438 * 9 7 4 11 11 N 1.34773 * 119.99939 * 179.97438 * 9 7 4 12 12 C 1.39280 * 119.99919 * 175.35366 * 11 9 7 13 13 C 1.39463 * 119.83584 * 34.43447 * 12 11 9 14 14 C 1.36380 * 120.18242 * 179.71693 * 13 12 11 15 15 C 1.40898 * 119.84151 * 0.57308 * 14 13 12 16 16 C 1.41153 * 120.15632 * 179.71818 * 15 14 13 17 17 H 1.07997 * 119.99464 * 148.74508 * 16 15 14 18 18 C 1.39885 * 120.00064 * 328.75358 * 16 15 14 19 19 N 1.30879 * 120.00243 * 167.75617 * 18 16 15 20 20 Si 1.86804 * 120.00005 * 347.74994 * 18 16 15 21 21 H 1.48496 * 109.47115 * 92.60480 * 20 18 16 22 22 H 1.48508 * 109.46867 * 212.60604 * 20 18 16 23 23 H 1.48495 * 109.47039 * 332.60200 * 20 18 16 24 24 C 1.40844 * 119.68267 * 359.70217 * 15 14 13 25 25 C 1.36467 * 119.82036 * 359.97438 * 24 15 14 26 26 Cl 1.73604 * 119.92640 * 180.02562 * 25 24 15 27 27 H 1.09004 * 109.47163 * 299.99589 * 1 2 3 28 28 H 1.08993 * 109.47283 * 60.00408 * 1 2 3 29 29 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47225 * 119.99834 * 2 1 3 31 31 H 1.08995 * 109.47469 * 239.99907 * 2 1 3 32 32 H 1.09002 * 109.47023 * 299.99958 * 3 2 1 33 33 H 1.09000 * 109.47570 * 60.00232 * 3 2 1 34 34 H 1.08998 * 109.47409 * 300.00073 * 6 4 3 35 35 H 1.09000 * 109.47223 * 60.00454 * 6 4 3 36 36 H 1.09005 * 109.47019 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46963 * 90.00588 * 8 7 4 38 38 H 1.08997 * 109.46671 * 209.99961 * 8 7 4 39 39 H 1.08991 * 109.47238 * 330.00212 * 8 7 4 40 40 H 0.96993 * 120.00554 * 355.35529 * 11 9 7 41 41 H 1.08007 * 119.91163 * 0.02562 * 13 12 11 42 42 H 1.07994 * 120.07883 * 180.26932 * 14 13 12 43 43 H 0.97001 * 120.00398 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.08226 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0799 2.8796 -0.1251 7 7 4.0578 0.8591 1.2527 8 6 3.7033 1.4739 2.5344 9 6 4.8327 -0.2433 1.2256 10 8 5.1265 -0.7537 0.1619 11 7 5.2818 -0.7798 2.3774 12 6 6.0010 -1.9724 2.3564 13 6 6.8556 -2.2485 1.2894 14 6 7.5675 -3.4114 1.2644 15 6 7.4291 -4.3410 2.3141 16 6 8.1583 -5.5494 2.2920 17 1 8.4702 -6.0088 3.2183 18 6 8.4770 -6.1517 1.0704 19 7 9.3468 -7.1288 1.0297 20 14 7.6612 -5.5615 -0.5030 21 1 8.5091 -4.5224 -1.1406 22 1 7.4964 -6.7062 -1.4346 23 1 6.3295 -4.9868 -0.1846 24 6 6.5600 -4.0584 3.3858 25 6 5.8590 -2.8876 3.4005 26 17 4.7875 -2.5363 4.7204 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.7170 3.3138 -1.0567 35 1 3.7162 3.4692 0.7164 36 1 5.1699 2.8797 -0.1242 37 1 2.7763 1.0353 2.9037 38 1 4.5014 1.2969 3.2553 39 1 3.5684 2.5468 2.3977 40 1 5.1043 -0.3355 3.2211 41 1 6.9577 -1.5372 0.4831 42 1 8.2321 -3.6216 0.4394 43 1 9.5676 -7.5468 0.1827 44 1 6.4493 -4.7661 4.1941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455699369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:47 Heat of formation + Delta-G solvation = -22.790662 kcal Electronic energy + Delta-G solvation = -25662.891596 eV Core-core repulsion = 22026.666228 eV Total energy + Delta-G solvation = -3636.225368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41914 -38.32219 -36.80959 -35.79488 -34.58213 -34.08509 -33.11812 -31.35513 -29.81223 -29.37032 -27.07793 -26.73654 -25.01561 -22.37878 -21.94229 -21.47564 -20.48053 -19.17260 -18.39693 -17.59156 -16.77411 -16.09771 -15.72856 -15.23210 -14.56989 -14.45970 -14.37013 -14.17842 -13.68820 -13.45539 -13.20894 -12.90517 -12.85908 -12.81565 -12.61605 -12.55808 -12.30659 -12.21545 -12.06595 -11.57344 -11.51121 -11.05250 -10.90049 -10.86302 -10.85910 -10.71045 -10.62127 -10.40996 -10.16245 -9.81858 -9.64162 -9.21693 -9.06640 -8.60204 -7.79250 -7.23673 -6.99754 -4.53885 2.26305 2.48959 2.78160 2.92692 3.12116 3.22591 3.34495 3.52888 3.97086 4.17470 4.39959 4.57164 4.86940 4.88061 4.95674 5.15160 5.18364 5.26758 5.34770 5.37917 5.42186 5.48694 5.59447 5.66138 5.74170 5.86951 5.91968 5.96735 6.06494 6.14782 6.22666 6.29984 6.43968 6.54749 6.59064 6.77955 6.91709 6.99140 7.20059 7.38838 7.50129 7.73485 7.85768 8.23356 8.24440 8.47072 8.68791 8.93054 10.01452 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003918 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.060223 B = 7143.935969 C = 7948.460330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.151 3.849 5 H 0.103 0.897 6 C -0.161 4.161 7 N -0.628 5.628 8 C 0.079 3.921 9 C 0.701 3.299 10 O -0.577 6.577 11 N -0.665 5.665 12 C 0.023 3.977 13 C -0.053 4.053 14 C -0.225 4.225 15 C 0.094 3.906 16 C -0.435 4.435 17 H 0.094 0.906 18 C 0.083 3.917 19 N -0.806 5.806 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.240 1.240 24 C -0.190 4.190 25 C -0.001 4.001 26 Cl -0.115 7.115 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.395 0.605 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 16.897 0.251 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.164 4.164 4 C 0.047 3.953 5 H 0.121 0.879 6 C -0.220 4.220 7 N -0.366 5.366 8 C -0.065 4.065 9 C 0.404 3.596 10 O -0.454 6.454 11 N -0.314 5.314 12 C -0.072 4.072 13 C -0.073 4.073 14 C -0.244 4.244 15 C 0.090 3.910 16 C -0.463 4.463 17 H 0.112 0.888 18 C -0.136 4.136 19 N -0.430 5.430 20 Si 0.738 3.262 21 H -0.195 1.195 22 H -0.219 1.219 23 H -0.163 1.163 24 C -0.210 4.210 25 C -0.029 4.029 26 Cl -0.087 7.087 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.176 16.339 -0.502 20.383 hybrid contribution -0.453 0.395 -0.006 0.601 sum -12.629 16.734 -0.508 20.971 Atomic orbital electron populations 1.21757 0.96128 1.01542 1.01253 1.21462 0.95239 0.96511 1.02805 1.21974 0.94812 0.97518 1.02126 1.20968 0.93185 0.94101 0.87064 0.87867 1.22155 1.01854 0.96057 1.01895 1.47033 1.53820 1.28932 1.06849 1.21647 1.00508 0.98925 0.85410 1.15867 0.78913 0.80283 0.84567 1.90884 1.62487 1.62851 1.29175 1.42151 1.56851 1.24478 1.07877 1.16578 1.03011 0.88110 0.99471 1.20492 0.92869 0.97623 0.96324 1.20843 1.05625 0.95732 1.02225 1.17656 0.89800 0.93024 0.90503 1.19451 1.27190 1.04529 0.95169 0.88776 1.26166 0.92560 0.93672 1.01226 1.69662 1.24233 1.19564 1.29551 0.86324 0.82788 0.77511 0.79573 1.19464 1.21872 1.16323 1.20543 1.01428 0.96151 1.02892 1.20301 0.97029 0.95891 0.89683 1.98264 1.66018 1.95171 1.49212 0.93082 0.93000 0.92855 0.91906 0.91844 0.91083 0.91892 0.91530 0.92514 0.92171 0.92803 0.91767 0.90873 0.76847 0.85734 0.87429 0.90219 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.15 0.37 -1.02 16 2 C -0.12 -1.38 5.82 -26.74 -0.16 -1.53 16 3 C -0.13 -1.17 4.64 -26.73 -0.12 -1.29 16 4 C 0.15 1.68 2.64 -67.93 -0.18 1.50 16 5 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 6 C -0.16 -1.40 9.17 37.16 0.34 -1.06 16 7 N -0.63 -7.96 2.21 -179.67 -0.40 -8.36 16 8 C 0.08 0.72 9.21 59.85 0.55 1.27 16 9 C 0.70 12.17 8.12 -86.92 -0.71 11.47 16 10 O -0.58 -12.21 13.02 5.29 0.07 -12.15 16 11 N -0.67 -11.56 4.90 -14.07 -0.07 -11.63 16 12 C 0.02 0.48 6.32 -83.52 -0.53 -0.05 16 13 C -0.05 -1.21 8.62 -39.79 -0.34 -1.56 16 14 C -0.22 -5.46 6.93 -39.25 -0.27 -5.73 16 15 C 0.09 2.34 5.13 -106.80 -0.55 1.79 16 16 C -0.44 -11.49 9.59 -37.86 -0.36 -11.86 16 17 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.08 2.16 5.47 -17.34 -0.09 2.06 16 19 N -0.81 -21.21 13.93 55.54 0.77 -20.44 16 20 Si 0.91 21.22 24.39 -169.99 -4.15 17.08 16 21 H -0.27 -6.10 6.67 56.52 0.38 -5.73 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.24 -5.88 6.67 56.52 0.38 -5.50 16 24 C -0.19 -4.32 9.50 -39.24 -0.37 -4.70 16 25 C 0.00 -0.01 6.30 -39.72 -0.25 -0.26 16 26 Cl -0.11 -1.96 27.91 -51.86 -1.45 -3.41 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.41 6.66 -51.93 -0.35 0.07 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.57 6.30 -51.93 -0.33 0.24 16 39 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 40 H 0.40 5.78 5.74 -40.82 -0.23 5.54 16 41 H 0.12 2.86 6.14 -52.48 -0.32 2.54 16 42 H 0.11 2.62 4.40 -52.49 -0.23 2.39 16 43 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -28.72 361.57 -8.80 -37.53 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.36 Total: 6.90 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.68 Total: -10.96 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.31 Total: -40.43 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.08 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -1.45 Total: -3.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.72 -8.80 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455699369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.736 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds