Wall clock time and date at job start Tue Mar 31 2020 14:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 C 1.53003 * 109.47513 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46555 * 54.99754 * 4 3 2 6 6 C 1.52996 * 109.47413 * 174.99708 * 4 3 2 7 7 N 1.46500 * 109.46991 * 295.00408 * 4 3 2 8 8 C 1.46506 * 119.99494 * 299.99166 * 7 4 3 9 9 C 1.34776 * 120.00430 * 119.99778 * 7 4 3 10 10 O 1.21583 * 119.99525 * 359.97438 * 9 7 4 11 11 N 1.34773 * 119.99939 * 179.97438 * 9 7 4 12 12 C 1.39280 * 119.99919 * 175.35366 * 11 9 7 13 13 C 1.39463 * 119.83584 * 34.43447 * 12 11 9 14 14 C 1.36380 * 120.18242 * 179.71693 * 13 12 11 15 15 C 1.40898 * 119.84151 * 0.57308 * 14 13 12 16 16 C 1.41153 * 120.15632 * 179.71818 * 15 14 13 17 17 H 1.07997 * 119.99464 * 148.74508 * 16 15 14 18 18 C 1.39885 * 120.00064 * 328.75358 * 16 15 14 19 19 N 1.30879 * 120.00243 * 167.75617 * 18 16 15 20 20 Si 1.86804 * 120.00005 * 347.74994 * 18 16 15 21 21 H 1.48496 * 109.47115 * 92.60480 * 20 18 16 22 22 H 1.48508 * 109.46867 * 212.60604 * 20 18 16 23 23 H 1.48495 * 109.47039 * 332.60200 * 20 18 16 24 24 C 1.40844 * 119.68267 * 359.70217 * 15 14 13 25 25 C 1.36467 * 119.82036 * 359.97438 * 24 15 14 26 26 Cl 1.73604 * 119.92640 * 180.02562 * 25 24 15 27 27 H 1.09004 * 109.47163 * 299.99589 * 1 2 3 28 28 H 1.08993 * 109.47283 * 60.00408 * 1 2 3 29 29 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47225 * 119.99834 * 2 1 3 31 31 H 1.08995 * 109.47469 * 239.99907 * 2 1 3 32 32 H 1.09002 * 109.47023 * 299.99958 * 3 2 1 33 33 H 1.09000 * 109.47570 * 60.00232 * 3 2 1 34 34 H 1.08998 * 109.47409 * 300.00073 * 6 4 3 35 35 H 1.09000 * 109.47223 * 60.00454 * 6 4 3 36 36 H 1.09005 * 109.47019 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46963 * 90.00588 * 8 7 4 38 38 H 1.08997 * 109.46671 * 209.99961 * 8 7 4 39 39 H 1.08991 * 109.47238 * 330.00212 * 8 7 4 40 40 H 0.96993 * 120.00554 * 355.35529 * 11 9 7 41 41 H 1.08007 * 119.91163 * 0.02562 * 13 12 11 42 42 H 1.07994 * 120.07883 * 180.26932 * 14 13 12 43 43 H 0.97001 * 120.00398 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.08226 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0799 2.8796 -0.1251 7 7 4.0578 0.8591 1.2527 8 6 3.7033 1.4739 2.5344 9 6 4.8327 -0.2433 1.2256 10 8 5.1265 -0.7537 0.1619 11 7 5.2818 -0.7798 2.3774 12 6 6.0010 -1.9724 2.3564 13 6 6.8556 -2.2485 1.2894 14 6 7.5675 -3.4114 1.2644 15 6 7.4291 -4.3410 2.3141 16 6 8.1583 -5.5494 2.2920 17 1 8.4702 -6.0088 3.2183 18 6 8.4770 -6.1517 1.0704 19 7 9.3468 -7.1288 1.0297 20 14 7.6612 -5.5615 -0.5030 21 1 8.5091 -4.5224 -1.1406 22 1 7.4964 -6.7062 -1.4346 23 1 6.3295 -4.9868 -0.1846 24 6 6.5600 -4.0584 3.3858 25 6 5.8590 -2.8876 3.4005 26 17 4.7875 -2.5363 4.7204 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.7170 3.3138 -1.0567 35 1 3.7162 3.4692 0.7164 36 1 5.1699 2.8797 -0.1242 37 1 2.7763 1.0353 2.9037 38 1 4.5014 1.2969 3.2553 39 1 3.5684 2.5468 2.3977 40 1 5.1043 -0.3355 3.2211 41 1 6.9577 -1.5372 0.4831 42 1 8.2321 -3.6216 0.4394 43 1 9.5676 -7.5468 0.1827 44 1 6.4493 -4.7661 4.1941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455699369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:47 Heat of formation + Delta-G solvation = -37.709454 kcal Electronic energy + Delta-G solvation = -25663.538524 eV Core-core repulsion = 22026.666228 eV Total energy + Delta-G solvation = -3636.872296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77633 -39.90357 -38.03550 -37.40680 -36.17149 -35.32746 -34.67294 -32.40355 -31.63504 -31.00732 -27.94897 -27.52400 -26.73273 -23.79887 -23.63317 -22.60547 -21.83395 -20.39080 -19.73485 -19.44198 -18.27219 -17.46396 -16.93583 -16.75927 -16.15636 -15.99081 -15.57648 -15.39205 -14.86210 -14.74090 -14.69163 -14.39851 -14.32417 -14.11314 -13.91355 -13.59338 -13.39186 -13.24520 -13.02205 -12.89124 -12.78222 -12.63040 -12.37596 -12.33256 -12.15994 -11.81027 -11.72581 -11.70689 -11.64893 -11.54839 -11.25326 -11.03620 -10.77374 -9.69174 -9.57422 -8.97448 -8.93324 -6.51240 0.46228 0.63716 1.21288 1.23798 1.35036 1.44856 1.62904 2.05862 2.10486 2.54122 2.96215 3.34539 3.73905 4.06149 4.08141 4.11136 4.21375 4.33679 4.38879 4.41950 4.59942 4.64101 4.71443 4.75171 4.77152 4.78108 4.87200 4.89189 4.91906 5.02699 5.05020 5.12845 5.22937 5.29095 5.33336 5.35229 5.39395 5.46060 5.66994 5.72692 5.80034 5.95515 6.04136 6.26184 6.56290 6.73220 6.92307 7.55649 8.13381 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003918 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.060223 B = 7143.935969 C = 7948.460330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.116 4.116 4 C 0.144 3.856 5 H 0.068 0.932 6 C -0.153 4.153 7 N -0.617 5.617 8 C 0.069 3.931 9 C 0.696 3.304 10 O -0.620 6.620 11 N -0.661 5.661 12 C 0.047 3.953 13 C -0.067 4.067 14 C -0.231 4.231 15 C 0.078 3.922 16 C -0.467 4.467 17 H 0.071 0.929 18 C 0.056 3.944 19 N -0.842 5.842 20 Si 0.956 3.044 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.190 4.190 25 C -0.006 4.006 26 Cl -0.072 7.072 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.411 0.589 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.296 0.704 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 20.349 0.903 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.154 4.154 4 C 0.041 3.959 5 H 0.087 0.913 6 C -0.211 4.211 7 N -0.354 5.354 8 C -0.073 4.073 9 C 0.398 3.602 10 O -0.501 6.501 11 N -0.311 5.311 12 C -0.049 4.049 13 C -0.087 4.087 14 C -0.251 4.251 15 C 0.075 3.925 16 C -0.496 4.496 17 H 0.089 0.911 18 C -0.159 4.159 19 N -0.469 5.469 20 Si 0.781 3.219 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.211 4.211 25 C -0.035 4.035 26 Cl -0.043 7.043 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.250 0.750 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.881 19.851 0.180 24.810 hybrid contribution 0.162 -0.410 -0.078 0.448 sum -14.719 19.442 0.101 24.385 Atomic orbital electron populations 1.21718 0.94372 1.01499 1.02596 1.21436 0.96780 0.97521 1.00323 1.21929 0.92955 0.96337 1.04161 1.21146 0.94610 0.94953 0.85206 0.91336 1.22093 1.00807 0.94293 1.03885 1.47122 1.52016 1.27202 1.09022 1.21972 1.01123 1.00680 0.83535 1.16090 0.79297 0.81214 0.83617 1.90861 1.64124 1.64454 1.30629 1.42044 1.56553 1.23471 1.08982 1.16688 1.01134 0.88922 0.98136 1.20573 0.93575 0.97314 0.97232 1.20889 1.05890 0.96222 1.02062 1.17739 0.90464 0.92708 0.91622 1.19409 1.29719 1.05830 0.94689 0.91134 1.26599 0.92804 0.93720 1.02809 1.69672 1.25692 1.20933 1.30557 0.85644 0.80870 0.77593 0.77747 1.18813 1.20199 1.18581 1.20684 1.00940 0.97067 1.02397 1.20266 0.97253 0.95052 0.90952 1.98273 1.64303 1.94859 1.46885 0.91689 0.91623 0.93700 0.94461 0.94353 0.89039 0.89670 0.89784 0.90168 0.93773 0.91645 0.91290 0.87723 0.74962 0.85870 0.87962 0.89380 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.12 -2.59 5.82 30.59 0.18 -2.41 16 3 C -0.12 -1.77 4.64 30.59 0.14 -1.63 16 4 C 0.14 2.91 2.64 44.99 0.12 3.03 16 5 H 0.07 1.89 6.90 -2.39 -0.02 1.88 16 6 C -0.15 -2.15 9.17 71.98 0.66 -1.49 16 7 N -0.62 -14.25 2.21 -840.63 -1.86 -16.11 16 8 C 0.07 0.98 9.21 127.77 1.18 2.16 16 9 C 0.70 23.42 8.12 179.06 1.45 24.87 16 10 O -0.62 -26.52 13.02 -3.98 -0.05 -26.58 16 11 N -0.66 -21.81 4.90 -316.70 -1.55 -23.37 16 12 C 0.05 1.93 6.32 38.58 0.24 2.18 16 13 C -0.07 -3.08 8.62 22.13 0.19 -2.88 16 14 C -0.23 -11.47 6.93 22.49 0.16 -11.32 16 15 C 0.08 3.99 5.13 -21.27 -0.11 3.88 16 16 C -0.47 -25.81 9.59 23.38 0.22 -25.59 16 17 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 18 C 0.06 3.03 5.47 85.23 0.47 3.49 16 19 N -0.84 -45.92 13.93 21.82 0.30 -45.61 16 20 Si 0.96 44.96 24.39 68.60 1.67 46.63 16 21 H -0.26 -11.91 6.67 99.48 0.66 -11.25 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.26 -13.07 6.67 99.48 0.66 -12.40 16 24 C -0.19 -8.69 9.50 22.49 0.21 -8.48 16 25 C -0.01 -0.25 6.30 22.18 0.14 -0.11 16 26 Cl -0.07 -2.26 27.91 -2.72 -0.08 -2.34 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.96 7.75 -2.39 -0.02 0.94 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 0.98 7.51 -2.39 -0.02 0.96 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.77 6.66 -2.39 -0.02 0.75 16 36 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.94 6.30 -2.39 -0.02 0.92 16 39 H 0.10 0.88 6.43 -2.39 -0.02 0.87 16 40 H 0.41 10.83 5.74 -92.71 -0.53 10.30 16 41 H 0.12 5.75 6.14 -2.91 -0.02 5.73 16 42 H 0.10 5.12 4.40 -2.91 -0.01 5.10 16 43 H 0.30 14.54 8.30 -92.71 -0.77 13.77 16 44 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -65.48 361.57 4.81 -60.67 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.40 Total: 22.62 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 5.97 Total: -15.92 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -3.11 Total: -85.09 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -65.48 4.81 -60.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455699369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.961 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds