Wall clock time and date at job start Tue Mar 31 2020 14:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 H 1.09004 * 109.46887 * 54.99533 * 3 2 1 5 5 C 1.52995 * 109.47185 * 295.00165 * 3 2 1 6 6 C 1.52996 * 109.47511 * 174.99644 * 3 2 1 7 7 H 1.09002 * 109.46470 * 59.99704 * 6 3 2 8 8 C 1.53001 * 109.47094 * 300.00614 * 6 3 2 9 9 N 1.46496 * 109.47196 * 179.97438 * 6 3 2 10 10 C 1.34780 * 119.99972 * 204.99957 * 9 6 3 11 11 O 1.21590 * 119.99909 * 0.02562 * 10 9 6 12 12 N 1.34770 * 120.00287 * 179.97438 * 10 9 6 13 13 C 1.39276 * 120.00267 * 175.32494 * 12 10 9 14 14 C 1.39460 * 119.84027 * 34.43535 * 13 12 10 15 15 C 1.36372 * 120.18164 * 179.71705 * 14 13 12 16 16 C 1.40888 * 119.84856 * 0.57791 * 15 14 13 17 17 C 1.41151 * 120.15833 * 179.71921 * 16 15 14 18 18 H 1.07998 * 119.99592 * 148.71780 * 17 16 15 19 19 C 1.39880 * 120.00243 * 328.71853 * 17 16 15 20 20 N 1.30881 * 120.00459 * 167.72249 * 19 17 16 21 21 Si 1.86801 * 120.00032 * 347.72455 * 19 17 16 22 22 H 1.48495 * 109.47360 * 92.58690 * 21 19 17 23 23 H 1.48504 * 109.47221 * 212.59119 * 21 19 17 24 24 H 1.48506 * 109.47083 * 332.58665 * 21 19 17 25 25 C 1.40848 * 119.68042 * 359.69761 * 16 15 14 26 26 C 1.36473 * 119.81967 * 359.97438 * 25 16 15 27 27 Cl 1.73592 * 119.92556 * 179.97438 * 26 25 16 28 28 H 1.09004 * 109.46962 * 60.00401 * 1 2 3 29 29 H 1.09007 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47352 * 300.00178 * 1 2 3 31 31 H 1.08993 * 109.47352 * 239.99822 * 2 1 3 32 32 H 1.09004 * 109.46962 * 119.99599 * 2 1 3 33 33 H 1.08996 * 109.47391 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47091 * 299.99851 * 5 3 2 35 35 H 1.09003 * 109.47393 * 59.99708 * 5 3 2 36 36 H 1.09002 * 109.46719 * 299.98937 * 8 6 3 37 37 H 1.08992 * 109.47875 * 59.99307 * 8 6 3 38 38 H 1.09004 * 109.46925 * 180.02562 * 8 6 3 39 39 H 0.96995 * 120.00424 * 25.00471 * 9 6 3 40 40 H 0.97003 * 119.99843 * 355.32607 * 12 10 9 41 41 H 1.08005 * 119.91067 * 0.02562 * 14 13 12 42 42 H 1.08004 * 120.07683 * 180.26983 * 15 14 13 43 43 H 0.97002 * 120.00985 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.08778 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4444 0.1258 7 1 3.9994 0.9053 -0.7160 8 6 3.9695 0.7603 1.4331 9 7 4.0531 2.8256 0.1252 10 6 5.3119 3.0951 -0.2741 11 8 6.0420 2.1920 -0.6342 12 7 5.7610 4.3658 -0.2752 13 6 7.0899 4.6345 -0.5940 14 6 7.7474 3.8529 -1.5436 15 6 9.0468 4.1134 -1.8653 16 6 9.7293 5.1677 -1.2269 17 6 11.0761 5.4394 -1.5505 18 1 11.4506 6.4510 -1.4976 19 6 11.9256 4.3985 -1.9398 20 7 13.0925 4.6686 -2.4673 21 14 11.3945 2.6228 -1.7067 22 1 10.7314 2.1380 -2.9438 23 1 12.5859 1.7831 -1.4220 24 1 10.4442 2.5356 -0.5689 25 6 9.0612 5.9496 -0.2646 26 6 7.7587 5.6814 0.0423 27 17 6.9328 6.6429 1.2284 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.9982 3.1543 -1.3071 34 1 2.0699 1.5875 -2.1491 35 1 0.5489 2.1252 -1.3969 36 1 3.5349 1.2994 2.2749 37 1 3.6062 -0.2673 1.4332 38 1 5.0559 0.7621 1.5230 39 1 3.4706 3.5461 0.4122 40 1 5.1587 5.0933 -0.0539 41 1 7.2246 3.0421 -2.0292 42 1 9.5530 3.5098 -2.6041 43 1 13.6818 3.9468 -2.7369 44 1 9.5780 6.7597 0.2285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455703213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:08 Heat of formation + Delta-G solvation = -35.896605 kcal Electronic energy + Delta-G solvation = -25103.055574 eV Core-core repulsion = 21466.261889 eV Total energy + Delta-G solvation = -3636.793685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23977 -38.45511 -37.34708 -35.79189 -34.52359 -33.96168 -33.13930 -30.66178 -29.80751 -29.57868 -29.18134 -25.08105 -24.69616 -22.88511 -21.94390 -21.19177 -20.44219 -19.96047 -18.12060 -17.59299 -17.11301 -15.84803 -15.37679 -15.15501 -15.03161 -14.63058 -14.34590 -14.08631 -13.92081 -13.64014 -13.43832 -12.98451 -12.84077 -12.67130 -12.49593 -12.44040 -12.34436 -12.01849 -11.82475 -11.59040 -11.51623 -11.05053 -10.99974 -10.86100 -10.81218 -10.65141 -10.61108 -10.40987 -10.18434 -9.81966 -9.66393 -9.23646 -9.06739 -8.94591 -7.79202 -7.23808 -6.99587 -4.53706 2.26915 2.49282 2.84107 2.99703 3.12437 3.22730 3.34717 3.56689 3.97188 4.39969 4.41507 4.44948 4.58460 4.71308 4.99551 5.15908 5.21393 5.26907 5.30737 5.32869 5.46502 5.61824 5.68425 5.70849 5.72401 5.78137 5.87526 5.93652 6.07110 6.10331 6.23892 6.25450 6.46821 6.55473 6.62023 6.76192 6.91677 7.00758 7.20062 7.44978 7.50150 7.73603 7.86135 8.24368 8.31368 8.47347 8.68955 8.95772 10.01591 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.003277 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.248520 B = 8542.236432 C = 9729.712507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.098 4.098 4 H 0.073 0.927 5 C -0.148 4.148 6 C 0.166 3.834 7 H 0.087 0.913 8 C -0.167 4.167 9 N -0.744 5.744 10 C 0.699 3.301 11 O -0.578 6.578 12 N -0.667 5.667 13 C 0.024 3.976 14 C -0.053 4.053 15 C -0.225 4.225 16 C 0.093 3.907 17 C -0.435 4.435 18 H 0.094 0.906 19 C 0.082 3.918 20 N -0.806 5.806 21 Si 0.912 3.088 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.240 1.240 25 C -0.190 4.190 26 C -0.001 4.001 27 Cl -0.115 7.115 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.391 0.609 40 H 0.395 0.605 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.048 -5.486 4.907 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.092 0.908 5 C -0.205 4.205 6 C 0.060 3.940 7 H 0.106 0.894 8 C -0.225 4.225 9 N -0.400 5.400 10 C 0.400 3.600 11 O -0.455 6.455 12 N -0.313 5.313 13 C -0.070 4.070 14 C -0.073 4.073 15 C -0.245 4.245 16 C 0.089 3.911 17 C -0.463 4.463 18 H 0.112 0.888 19 C -0.137 4.137 20 N -0.430 5.430 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.219 1.219 24 H -0.163 1.163 25 C -0.210 4.210 26 C -0.030 4.030 27 Cl -0.086 7.086 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.225 0.775 40 H 0.229 0.771 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.177 -6.283 4.583 21.624 hybrid contribution -0.661 0.095 0.439 0.799 sum -20.839 -6.187 5.022 22.310 Atomic orbital electron populations 1.21814 0.95750 1.01563 1.01869 1.21611 0.95901 0.95639 1.02649 1.21449 0.94260 0.97122 0.98913 0.90832 1.21865 1.01006 1.00711 0.96928 1.20775 0.92581 0.81687 0.98908 0.89446 1.22272 1.02707 1.00306 0.97215 1.45172 1.13235 1.09274 1.72297 1.15950 0.81877 0.83287 0.78880 1.90901 1.55744 1.44938 1.53949 1.41991 1.10635 1.06224 1.72479 1.16551 0.84050 1.02433 1.03963 1.20491 0.94877 0.97641 0.94328 1.20846 0.94879 1.03808 1.04931 1.17661 0.93680 0.90544 0.89166 1.19441 0.92933 0.97174 1.36739 0.88786 1.26171 0.94338 1.02341 0.90834 1.69661 1.08748 1.36307 1.28287 0.86318 0.78056 0.80301 0.81484 1.19465 1.21880 1.16338 1.20549 0.92308 1.05617 1.02541 1.20307 0.93062 0.95784 0.93807 1.98264 1.79754 1.72052 1.58552 0.92483 0.92807 0.92830 0.91654 0.91276 0.92539 0.92505 0.92464 0.92772 0.91629 0.91785 0.77530 0.77107 0.85713 0.87420 0.90224 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.84 5.19 -26.73 -0.14 -0.98 16 3 C -0.10 -0.76 2.02 -90.62 -0.18 -0.95 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.15 -1.16 8.79 37.15 0.33 -0.84 16 6 C 0.17 1.78 2.16 -67.93 -0.15 1.64 16 7 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 8 C -0.17 -1.77 9.14 37.16 0.34 -1.43 16 9 N -0.74 -8.87 4.39 -58.68 -0.26 -9.13 16 10 C 0.70 11.80 8.37 -86.92 -0.73 11.07 16 11 O -0.58 -12.16 13.36 5.29 0.07 -12.09 16 12 N -0.67 -11.27 5.03 -14.07 -0.07 -11.34 16 13 C 0.02 0.51 6.32 -83.52 -0.53 -0.02 16 14 C -0.05 -1.22 8.62 -39.80 -0.34 -1.56 16 15 C -0.22 -5.47 6.94 -39.25 -0.27 -5.74 16 16 C 0.09 2.32 5.13 -106.80 -0.55 1.78 16 17 C -0.43 -11.47 9.59 -37.86 -0.36 -11.84 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.08 2.14 5.47 -17.34 -0.09 2.05 16 20 N -0.81 -21.21 13.93 55.54 0.77 -20.43 16 21 Si 0.91 21.22 24.40 -169.99 -4.15 17.07 16 22 H -0.27 -6.10 6.66 56.52 0.38 -5.72 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.24 -5.88 6.67 56.52 0.38 -5.51 16 25 C -0.19 -4.32 9.50 -39.23 -0.37 -4.69 16 26 C 0.00 -0.02 6.30 -39.72 -0.25 -0.27 16 27 Cl -0.11 -1.95 27.91 -51.86 -1.45 -3.39 16 28 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 33 H 0.06 0.46 7.44 -51.93 -0.39 0.08 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.39 3.58 8.40 -40.82 -0.34 3.24 16 40 H 0.39 5.49 8.06 -40.82 -0.33 5.16 16 41 H 0.13 2.85 6.14 -52.48 -0.32 2.53 16 42 H 0.11 2.62 4.41 -52.48 -0.23 2.39 16 43 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 44 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -28.77 361.71 -8.90 -37.66 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.32 Total: 8.53 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.94 Total: -12.33 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.45 Total: -40.91 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.07 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.45 Total: -3.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.77 -8.90 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455703213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.764 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds