Wall clock time and date at job start Tue Mar 31 2020 14:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47299 * 2 1 4 4 H 1.08993 * 109.47352 * 54.99981 * 3 2 1 5 5 N 1.46499 * 109.47020 * 294.99822 * 3 2 1 6 6 C 1.34776 * 120.00017 * 85.00034 * 5 3 2 7 7 O 1.21582 * 120.00006 * 0.02562 * 6 5 3 8 8 N 1.34783 * 120.00077 * 179.97438 * 6 5 3 9 9 C 1.39271 * 119.99537 * 175.75497 * 8 6 5 10 10 C 1.39457 * 119.84583 * 34.73422 * 9 8 6 11 11 C 1.36375 * 120.18102 * 179.71964 * 10 9 8 12 12 C 1.40888 * 119.85023 * 0.57312 * 11 10 9 13 13 C 1.41154 * 120.16164 * 179.72209 * 12 11 10 14 14 H 1.07999 * 119.99742 * 34.75754 * 13 12 11 15 15 C 1.39889 * 119.99958 * 214.75285 * 13 12 11 16 16 N 1.30877 * 119.99891 * 355.58803 * 15 13 12 17 17 Si 1.86806 * 119.99673 * 175.59254 * 15 13 12 18 18 H 1.48501 * 109.46978 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47062 * 120.00035 * 17 15 13 20 20 H 1.48497 * 109.46837 * 239.99897 * 17 15 13 21 21 C 1.40843 * 119.68251 * 359.69970 * 12 11 10 22 22 C 1.36477 * 119.81476 * 359.97438 * 21 12 11 23 23 Cl 1.73602 * 119.92531 * 179.97438 * 22 21 12 24 24 C 1.53004 * 109.47037 * 175.00313 * 3 2 1 25 25 C 1.53002 * 109.46932 * 179.97438 * 24 3 2 26 26 C 1.52995 * 109.47085 * 299.99590 * 24 3 2 27 27 H 1.09002 * 109.46609 * 300.00444 * 1 2 3 28 28 H 1.09000 * 109.46819 * 59.99950 * 1 2 3 29 29 H 1.08989 * 109.47390 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47133 * 239.99539 * 2 1 3 31 31 H 1.09005 * 109.47231 * 119.99863 * 2 1 3 32 32 H 0.97010 * 120.00182 * 264.99993 * 5 3 2 33 33 H 0.96995 * 119.99942 * 355.75363 * 8 6 5 34 34 H 1.08007 * 119.91056 * 359.97438 * 10 9 8 35 35 H 1.08004 * 120.07845 * 180.27446 * 11 10 9 36 36 H 0.97001 * 119.99792 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.09606 * 180.02562 * 21 12 11 38 38 H 1.09003 * 109.47325 * 59.99641 * 24 3 2 39 39 H 1.08993 * 109.47500 * 60.00285 * 25 24 3 40 40 H 1.09002 * 109.46668 * 179.97438 * 25 24 3 41 41 H 1.08998 * 109.47070 * 299.99364 * 25 24 3 42 42 H 1.09005 * 109.47005 * 60.00099 * 26 24 3 43 43 H 1.08998 * 109.47509 * 180.02562 * 26 24 3 44 44 H 1.09003 * 109.47536 * 300.00481 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3670 7 8 -0.3411 2.6326 -0.4319 8 7 0.0789 3.2673 -2.5185 9 6 -1.2092 3.7752 -2.6690 10 6 -1.8688 4.3300 -1.5727 11 6 -3.1280 4.8345 -1.7135 12 6 -3.7677 4.7833 -2.9678 13 6 -5.0732 5.2982 -3.1196 14 1 -5.3794 6.1679 -2.5573 15 6 -5.9703 4.6819 -3.9985 16 7 -5.5736 3.6818 -4.7436 17 14 -7.7343 5.2866 -4.1084 18 1 -7.9284 6.4202 -3.1690 19 1 -8.0175 5.7377 -5.4946 20 1 -8.6594 4.1822 -3.7485 21 6 -3.0981 4.2165 -4.0696 22 6 -1.8356 3.7216 -3.9152 23 17 -1.0079 3.0217 -5.2712 24 6 3.5649 1.4442 0.1256 25 6 4.0750 2.8867 0.1250 26 6 3.9697 0.7602 1.4330 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.2721 2.1230 -1.9979 33 1 0.7195 3.3476 -3.2424 34 1 -1.3796 4.3641 -0.6104 35 1 -3.6356 5.2678 -0.8644 36 1 -6.1957 3.2543 -5.3528 37 1 -3.5820 4.1742 -5.0342 38 1 3.9995 0.9051 -0.7162 39 1 3.6405 3.4261 0.9666 40 1 5.1613 2.8879 0.2150 41 1 3.7867 3.3736 -0.8066 42 1 3.6063 -0.2675 1.4330 43 1 5.0560 0.7618 1.5228 44 1 3.5351 1.2992 2.2748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455710039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:48 Heat of formation + Delta-G solvation = -34.911575 kcal Electronic energy + Delta-G solvation = -25407.094486 eV Core-core repulsion = 21770.343515 eV Total energy + Delta-G solvation = -3636.750970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.22649 -38.22902 -36.96067 -35.48137 -34.38796 -33.33510 -32.93210 -31.89948 -29.40091 -28.88339 -27.34662 -26.21626 -24.74571 -22.09001 -21.54299 -20.94044 -20.38522 -19.98255 -17.92117 -17.36248 -16.90594 -15.84128 -15.39877 -15.11978 -14.60276 -14.56647 -14.22601 -13.83424 -13.65352 -13.26218 -13.11191 -12.88557 -12.53432 -12.40753 -12.35559 -12.24869 -12.07681 -11.63670 -11.49989 -11.40722 -11.16957 -11.11722 -10.93871 -10.89040 -10.66694 -10.56990 -10.52231 -10.27820 -9.96977 -9.71965 -9.51475 -9.26948 -8.92480 -8.74085 -7.50576 -6.94044 -6.68106 -4.42503 2.49185 2.88272 3.02737 3.07375 3.10619 3.13843 3.25290 3.72101 3.94270 4.46238 4.60094 4.61972 4.70053 4.85861 5.20350 5.24886 5.34431 5.42772 5.48254 5.56068 5.63034 5.64915 5.78838 5.82962 5.97728 6.06938 6.16011 6.16679 6.23608 6.34964 6.54106 6.64758 6.74517 6.78603 6.90591 7.04826 7.14817 7.30413 7.39706 7.73657 7.75713 7.97102 8.15058 8.45454 8.47712 8.79571 8.83970 9.09949 10.22413 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.003046 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.333506 B = 9189.611358 C = 9617.166154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.169 3.831 4 H 0.088 0.912 5 N -0.745 5.745 6 C 0.699 3.301 7 O -0.572 6.572 8 N -0.668 5.668 9 C 0.036 3.964 10 C -0.076 4.076 11 C -0.200 4.200 12 C 0.106 3.894 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.069 3.931 16 N -0.806 5.806 17 Si 0.917 3.083 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.135 4.135 22 C -0.025 4.025 23 Cl -0.122 7.122 24 C -0.104 4.104 25 C -0.146 4.146 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.390 0.610 33 H 0.393 0.607 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.280 0.720 37 H 0.143 0.857 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.666 -4.510 4.865 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.064 3.936 4 H 0.106 0.894 5 N -0.401 5.401 6 C 0.400 3.600 7 O -0.449 6.449 8 N -0.314 5.314 9 C -0.058 4.058 10 C -0.096 4.096 11 C -0.220 4.220 12 C 0.102 3.898 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.147 4.147 16 N -0.433 5.433 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.156 4.156 22 C -0.054 4.054 23 Cl -0.094 7.094 24 C -0.123 4.123 25 C -0.203 4.203 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.227 0.773 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.930 -4.778 5.449 16.596 hybrid contribution -0.147 -0.035 -1.044 1.055 sum 14.783 -4.814 4.405 16.159 Atomic orbital electron populations 1.21782 0.94462 1.00110 1.03769 1.22046 0.97477 0.96272 1.01591 1.20873 0.92959 0.92913 0.86859 0.89421 1.45171 1.16180 1.61762 1.16948 1.15915 0.81998 0.78380 0.83745 1.90905 1.51148 1.64381 1.38482 1.42070 1.13232 1.59911 1.16212 1.16694 0.85989 1.09513 0.93638 1.20420 0.95402 0.97012 0.96778 1.20902 0.96190 1.07973 0.96954 1.17598 0.92509 0.90152 0.89498 1.19512 0.95832 1.12444 1.20907 0.90164 1.25912 1.01390 0.93959 0.93445 1.69751 1.36641 1.18160 1.18701 0.86114 0.81298 0.79575 0.78840 1.18510 1.19928 1.19925 1.21181 0.90290 1.02808 1.01299 1.20423 0.94394 1.04792 0.85744 1.98246 1.79670 1.84208 1.47232 1.21388 0.94652 0.97158 0.99068 1.21818 1.00430 0.95689 1.02398 1.21862 1.01145 1.00729 0.96665 0.92230 0.91819 0.94210 0.92365 0.91326 0.77664 0.77308 0.86199 0.87997 0.90929 0.83907 0.90915 0.92510 0.92794 0.92460 0.92030 0.92496 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.51 37.16 0.32 -1.81 16 2 C -0.14 -1.52 5.39 -26.73 -0.14 -1.67 16 3 C 0.17 1.89 1.84 -67.93 -0.12 1.76 16 4 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 5 N -0.74 -9.24 4.34 -58.68 -0.25 -9.49 16 6 C 0.70 11.95 6.96 -86.91 -0.61 11.35 16 7 O -0.57 -11.75 10.86 5.29 0.06 -11.70 16 8 N -0.67 -11.83 5.02 -14.07 -0.07 -11.91 16 9 C 0.04 0.79 6.32 -83.52 -0.53 0.26 16 10 C -0.08 -1.75 8.61 -39.80 -0.34 -2.09 16 11 C -0.20 -4.86 9.74 -39.25 -0.38 -5.25 16 12 C 0.11 2.74 5.55 -106.80 -0.59 2.15 16 13 C -0.46 -11.80 9.02 -37.86 -0.34 -12.14 16 14 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 15 C 0.07 1.70 5.42 -17.34 -0.09 1.61 16 16 N -0.81 -20.65 10.59 55.54 0.59 -20.06 16 17 Si 0.92 18.66 29.56 -169.99 -5.03 13.63 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 C -0.14 -3.42 8.38 -39.23 -0.33 -3.75 16 22 C -0.03 -0.57 6.30 -39.72 -0.25 -0.82 16 23 Cl -0.12 -2.35 27.92 -51.86 -1.45 -3.80 16 24 C -0.10 -0.85 2.55 -90.62 -0.23 -1.08 16 25 C -0.15 -1.20 9.04 37.16 0.34 -0.86 16 26 C -0.15 -1.05 8.85 37.16 0.33 -0.72 16 27 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 28 H 0.06 1.14 5.64 -51.93 -0.29 0.85 16 29 H 0.04 0.53 8.14 -51.94 -0.42 0.11 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.65 6.17 -51.93 -0.32 0.33 16 32 H 0.39 3.85 8.40 -40.82 -0.34 3.51 16 33 H 0.39 5.93 8.07 -40.82 -0.33 5.60 16 34 H 0.12 2.73 6.17 -52.48 -0.32 2.41 16 35 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.14 3.79 6.13 -52.49 -0.32 3.47 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.49 7.44 -51.93 -0.39 0.11 16 42 H 0.06 0.42 6.32 -51.93 -0.33 0.09 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -28.09 363.08 -10.04 -38.13 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.38 Total: 12.77 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.99 Total: -13.06 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.26 Total: -41.46 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.06 Total: -11.70 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.45 Total: -3.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.09 -10.04 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455710039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.221 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds